© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|047370 |
| Gene name | |
| Location | scaffold_2:2195689..2197265 |
| Strand | + |
| Gene length (bp) | 1576 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 40.81 | 18.65 | 62.97 |
| Initials | Initials knots | 58.78 | 33.26 | 84.30 |
| Pileal_Stipeal_center | Stage I stipe center | 11.77 | 5.57 | 17.97 |
| Pileal_Stipeal_shell | Stage I stipe shell | 6.90 | 2.98 | 10.81 |
| DIF_stipe_center | Stage II stipe center | 13.48 | 6.57 | 20.39 |
| DIF_stipe_shell | Stage II stipe shell | 20.46 | 10.53 | 30.40 |
| DIF_stipe_skin | Stage II stipe skin | 10.97 | 5.22 | 16.72 |
| DIF_cap_skin | Stage II cap skin | 6.05 | 2.57 | 9.53 |
| DIF_cap_tissue | Stage II cap tissue | 5.89 | 2.50 | 9.27 |
| DIF_gill_tissue | Stage II gill tissue | 9.96 | 4.61 | 15.31 |
| YFB_stipe_center | Young fruiting body stipe center | 16.15 | 7.57 | 24.73 |
| YFB_stipe_shell | Young fruiting body stipe shell | 28.66 | 15.42 | 41.89 |
| YFB_stipe_skin | Young fruiting body stipe skin | 16.00 | 8.01 | 24.00 |
| YFB_cap_skin | Young fruiting body cap skin | 5.61 | 2.39 | 8.83 |
| YFB_cap_tissue | Young fruiting body cap tissue | 5.53 | 2.36 | 8.70 |
| YFB_gill_tissue | Young fruiting body gill tissue | 8.54 | 3.92 | 13.17 |
| YFB_veil | Young fruiting body veil | 8.97 | 3.94 | 14.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.006032 | yes |
| Casing | YFB_stipe_shell | 0.385626 | no |
| Casing | YFB_stipe_skin | 0.005302 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.359938 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.001140 | yes |
| Casing | DIF_stipe_shell | 0.043772 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.229251 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.002084 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.224034 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.150574 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.140144 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.805181 | no |
| DIF_gill_tissue | YFB_veil | 0.876218 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.102187 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.988778 | no |
| YFB_stipe_center | YFB_cap_skin | 0.002084 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.002951 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.090658 | no |
| YFB_stipe_center | YFB_veil | 0.139707 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.080883 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_veil | 0.001625 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.002084 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.003365 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.082277 | no |
| YFB_stipe_skin | YFB_veil | 0.130530 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.986057 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.343969 | no |
| YFB_cap_skin | YFB_veil | 0.283263 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.330737 | no |
| YFB_cap_tissue | YFB_veil | 0.270661 | no |
| YFB_gill_tissue | YFB_veil | 0.947324 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.014081 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.771151 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.482694 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.004548 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.483189 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.042260 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.040279 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.491747 | no |
| Pileal_Stipeal_center | YFB_veil | 0.587128 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.177565 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.811072 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.120521 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.916129 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.073043 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.062995 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.441072 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.021583 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.019987 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.731058 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.713166 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.712595 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.631374 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.072330 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.003765 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.269575 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.847978 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.805790 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.499611 | no |
| DIF_stipe_center | YFB_stipe_center | 0.733236 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.014956 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.741401 | no |
| DIF_stipe_center | YFB_cap_skin | 0.013186 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.012577 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.251000 | no |
| DIF_stipe_center | YFB_veil | 0.332715 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.269850 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.681912 | no |
| DIF_stipe_center | DIF_cap_skin | 0.025711 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.021846 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.042260 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.628194 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.380153 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.593554 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.011968 | yes |
| DIF_stipe_shell | YFB_veil | 0.020523 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.077161 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.000613 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.883944 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.357374 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.002951 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.357803 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.076984 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.072685 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.623559 | no |
| DIF_stipe_skin | YFB_veil | 0.718530 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.118854 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.106507 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.233318 | no |
| DIF_cap_skin | YFB_stipe_center | 0.004928 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.004548 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.917993 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.905081 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.474688 | no |
| DIF_cap_skin | YFB_veil | 0.398297 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.972299 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.201511 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.006032 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.005671 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.950110 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.936701 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.426345 | no |
| DIF_cap_tissue | YFB_veil | 0.355963 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|047370 MYPAKTSLMQVLTLIVSLCLVLLGTVSAARVHIDTKVKGPHKKTSNCFPALDFDMPSTVPADSQLPSWWCDASTE YAFLGFSYEVTACQSRSQLISEFKDIRNHFNSRYVRLYGACDRKNFYDDIVEAAWESGLGVHALVWFGFDGDDIW IRRRDTLLAALHANPKAKWVTRVLQFGSEPLFDNVLPHQQLTEQVVAAQRNLSSLHIPVTVSELAFGYQERGGAQ DLLDAIDSINIHMLPFFSQQASTAKNAWPLVLNDLQFFIDNGNGKKMYFDENGWPSVTSEGVQPNSPDAVADIPN ERDYYTLLDEHCSDLKEVVGGGVGCESLIDALSRQS* |
| Coding | >AgabiH97|047370 ATGTATCCGGCGAAAACTAGTCTGATGCAAGTCCTTACCCTCATCGTCTCTCTATGCCTGGTTCTACTGGGCACG GTTTCAGCTGCCCGAGTGCATATTGATACCAAAGTCAAGGGGCCTCACAAGAAGACGAGCAATTGCTTTCCTGCC CTCGATTTTGACATGCCTTCCACGGTACCGGCTGACTCACAGTTACCCTCCTGGTGGTGCGACGCAAGTACTGAA TACGCTTTCCTGGGCTTCAGCTACGAAGTCACAGCTTGTCAAAGCAGGTCGCAACTCATATCTGAATTCAAGGAC ATCCGAAACCATTTCAACTCGCGCTACGTTCGACTTTACGGCGCTTGCGACCGCAAAAACTTCTATGATGACATC GTCGAGGCTGCTTGGGAGAGTGGTCTGGGAGTCCATGCGCTCGTCTGGTTTGGCTTTGACGGTGATGACATCTGG ATTAGGCGACGCGACACGCTATTAGCAGCCCTACATGCAAACCCGAAAGCCAAATGGGTAACCCGAGTGTTGCAA TTCGGATCGGAACCGCTTTTCGATAATGTCTTGCCTCATCAACAACTCACCGAGCAAGTGGTAGCTGCGCAAAGG AATTTGTCTAGTCTGCATATTCCTGTAACTGTCTCTGAACTCGCGTTCGGCTACCAGGAACGTGGTGGAGCCCAG GACTTACTCGACGCCATTGATTCAATTAATATCCATATGCTACCTTTCTTCTCCCAGCAGGCATCAACTGCGAAA AATGCCTGGCCTCTAGTCTTAAACGACTTGCAATTTTTCATTGATAACGGCAACGGAAAGAAAATGTACTTTGAC GAGAATGGATGGCCATCTGTCACCTCCGAAGGCGTGCAACCAAACAGTCCCGATGCTGTCGCCGATATACCAAAT GAACGCGATTACTATACACTACTGGACGAACATTGTAGCGATCTCAAAGAAGTAGTTGGCGGCGGTGTCGGATGT GAATCGTTAATTGACGCGCTCTCACGACAGAGCTAA |
| Transcript | >AgabiH97|047370 ATGTATCCGGCGAAAACTAGTCTGATGCAAGTCCTTACCCTCATCGTCTCTCTATGCCTGGTTCTACTGGGCACG GTTTCAGCTGCCCGAGTGCATATTGATACCAAAGTCAAGGGGCCTCACAAGAAGACGAGCAATTGCTTTCCTGCC CTCGATTTTGACATGCCTTCCACGGTACCGGCTGACTCACAGTTACCCTCCTGGTGGTGCGACGCAAGTACTGAA TACGCTTTCCTGGGCTTCAGCTACGAAGTCACAGCTTGTCAAAGCAGGTCGCAACTCATATCTGAATTCAAGGAC ATCCGAAACCATTTCAACTCGCGCTACGTTCGACTTTACGGCGCTTGCGACCGCAAAAACTTCTATGATGACATC GTCGAGGCTGCTTGGGAGAGTGGTCTGGGAGTCCATGCGCTCGTCTGGTTTGGCTTTGACGGTGATGACATCTGG ATTAGGCGACGCGACACGCTATTAGCAGCCCTACATGCAAACCCGAAAGCCAAATGGGTAACCCGAGTGTTGCAA TTCGGATCGGAACCGCTTTTCGATAATGTCTTGCCTCATCAACAACTCACCGAGCAAGTGGTAGCTGCGCAAAGG AATTTGTCTAGTCTGCATATTCCTGTAACTGTCTCTGAACTCGCGTTCGGCTACCAGGAACGTGGTGGAGCCCAG GACTTACTCGACGCCATTGATTCAATTAATATCCATATGCTACCTTTCTTCTCCCAGCAGGCATCAACTGCGAAA AATGCCTGGCCTCTAGTCTTAAACGACTTGCAATTTTTCATTGATAACGGCAACGGAAAGAAAATGTACTTTGAC GAGAATGGATGGCCATCTGTCACCTCCGAAGGCGTGCAACCAAACAGTCCCGATGCTGTCGCCGATATACCAAAT GAACGCGATTACTATACACTACTGGACGAACATTGTAGCGATCTCAAAGAAGTAGTTGGCGGCGGTGTCGGATGT GAATCGTTAATTGACGCGCTCTCACGACAGAGCTAA |
| Gene | >AgabiH97|047370 ATGTATCCGGCGAAAACTAGTCTGATGCAAGTCCTTACCCTCATCGTCTCTCTATGCCTGGTTCTACTGGGCACG GTTTCAGCTGCCCGAGTGCATATTGATACCAAAGTCAAGGGGCCTCACAAGAAGACGAGCAATTGCTTTCCTGCC CTCGATTTTGACATGCCTTCCACGGTACCGGCTGACTCACAGTTACCCTCCTGGTGGTGCGACGCAAGTACTGAA TACGCTTTCCTGGGCTTCAGCTACGAAGTCACAGCTTGTAGGTGATTTTCTTTGCTTTTACCATGTGTCTCATAG GTCGCCTTCGACCCGAAGGTCAAAGCAGGTCGCAACTCATATCTGAATTCAAGGACATCCGAAACCATTTCAACT CGCGCTACGTTCGACTTTACGGCGCTTGCGACCGCAAAAACTTCTAGTATGTTCCTTGCAATTGTATCGGCATTT GTATTGACATAATGCTTATAGTGATGACATCGTCGAGGCTGCTTGGGAGAGTGGTCTGGGAGTCCATGCGCTCGT CTGGGTAAGCTTAAATTTCGAAGACCACCCTTAGCTTAAAAGCTGAACGAGCCCCATTTGGCATCTTCGCTAAGT TTGGCTTTGACGGTGATGACATCTGGATTAGGCGACGCGACACGCTATTAGCAGCCCTACATGCAAACCCGAAAG CCAAATGGGTAACCCGAGTGTTGCAATTCGGATCGGAACCGCTTTTCGATAATGTCTTGCCTCATCAACAACTCA CCGAGCAAGTGGTAGCTGCGCAAAGGAATTTGTCTAGTCTGCATATTCCTGTAACTGTCTCTGAACTCGCGTTCG GGTATATCTATCCTATTGTTCTTGTTCGTCTGTTCTGATTTGTTCGTACAGCTACCAGGAACGTGGTGGAGCCCA GGACTTACTCGACGCCATTGATTCAATTAATATCCATATGCTACCTTTCTTCTCCCAGCAGGCATCAACTGGTAG GGCAATCAGCTAAGTCAGTGCCTCGGTAACAAATGCCTGACACAATCCATTTTAGCGAAAAATGCCTGGCCTCTA GTCTTAAACGACTTGCAATTTTTCATTGATAACGGCAACGGAAAGAAAATGTACTTTGACGAGGCGAGACCCAGA TCACTATTACATAGTCTTCACATCTCACGAAGAATATAGAATGGATGGCCATCTGTCACCTCCGAAGGCGTGCAA CCAAACAGTCCCGATGCTGTCGCCGATATACCAAATGAACGCGTAAGCGTCGCTTCATTACTAGCATCATCCTGA TCTGAAACTCAGACGTTCTGATAGGATTACTATACACTACTGGACGAACATTGTAGCGATCTCAAAGAAGTAGTT GGCGGCGGTGTCGGATGGTTTGCTCACATCTATAGTGACGATCAAGAGCCGGGTTATGGGATATACAACACTAGA GGGGAACTGAAATTTTCCTTCAACCCTCGCACTTCATGCTAACAAGTGAATCGTTAATGTATGCTCCACAGTCAA GATTCAAATTATCGCAAACCCTTTCGCTGACCTCCTCGTCATCTCTAATAGTGACGCGCTCTCACGACAGAGCTA A |