Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|047160
Gene name
Location	scaffold_2:2145467..2147187
Strand	-
Gene length (bp)	1720
Transcript length (bp)	1482
Coding sequence length (bp)	1482
Protein length (aa)	494

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03909	BSD	BSD domain	1.7E-08	349	384

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|A2BIJ3\|BSDC1_DANRE	BSD domain-containing protein 1 OS=Danio rerio GN=bsdc1 PE=1 SV=1	277	390	2.0E-07
sp\|Q6NTW1\|BSC1B_XENLA	BSD domain-containing protein 1-B OS=Xenopus laevis GN=bsdc1-b PE=2 SV=1	277	395	8.0E-07
sp\|Q3SX22\|BSDC1_BOVIN	BSD domain-containing protein 1 OS=Bos taurus GN=BSDC1 PE=2 SV=1	277	390	1.0E-06
sp\|Q5BJ78\|BSDC1_XENTR	BSD domain-containing protein 1 OS=Xenopus tropicalis GN=bsdc1 PE=2 SV=1	277	390	1.0E-06
sp\|Q9NW68\|BSDC1_HUMAN	BSD domain-containing protein 1 OS=Homo sapiens GN=BSDC1 PE=1 SV=1	277	390	1.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|A2BIJ3\|BSDC1_DANRE	BSD domain-containing protein 1 OS=Danio rerio GN=bsdc1 PE=1 SV=1	277	390	2.0E-07
sp\|Q6NTW1\|BSC1B_XENLA	BSD domain-containing protein 1-B OS=Xenopus laevis GN=bsdc1-b PE=2 SV=1	277	395	8.0E-07
sp\|Q3SX22\|BSDC1_BOVIN	BSD domain-containing protein 1 OS=Bos taurus GN=BSDC1 PE=2 SV=1	277	390	1.0E-06
sp\|Q5BJ78\|BSDC1_XENTR	BSD domain-containing protein 1 OS=Xenopus tropicalis GN=bsdc1 PE=2 SV=1	277	390	1.0E-06
sp\|Q9NW68\|BSDC1_HUMAN	BSD domain-containing protein 1 OS=Homo sapiens GN=BSDC1 PE=1 SV=1	277	390	1.0E-06
sp\|Q80Y55\|BSDC1_MOUSE	BSD domain-containing protein 1 OS=Mus musculus GN=Bsdc1 PE=1 SV=1	277	390	2.0E-06
sp\|Q6INU2\|BSC1A_XENLA	BSD domain-containing protein 1-A OS=Xenopus laevis GN=bsdc1-a PE=2 SV=1	277	390	3.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|047160 MNFLDTYDISASSAGSSTPPPNQSQQTLNEEVNQVIGQLGRFWGGFRKQSQTVLETARRDIGDVVTQAQKELTKL ANTAAEEPNTERETRRSSSREYEEEATPMSASVSTIQGTSSTDSSTESSGHANVQPQPGSNTQTLFSRLQSALPP NVLSTVQNHIPESIKNASENVDLTQIRMNLLSEVQRIQGVTRAQAEEYAHKSEALLREAVKEAQEVFKDAVKVIP PEGSSASSASATSGLIWDGTDMWTLPGVAETNSDAADADASSGKGKGKSVDSGAAAVATRAEALLRRLKHDPAIV RVDPGVDGTTKDKYTAWIKNEVVSKGGIAGEEWRTVISKSLDDSIDGQALTSLKDVLVPSELAEQEFWQRFFFRV HQIKEEEEKRKALLQANTESEDEFDWDDEDSEHEDENKGEVTKEATPAQDKSMATINNPGLAPPSSTTSTRESSL DSFDVVSSANASVSGDRRTQHVKAAEKDDDEDEDEDEDDSDWE*
Coding	>AgabiH97\|047160 ATGAACTTCCTTGATACCTACGACATCTCCGCGAGTTCAGCGGGTTCTTCGACCCCTCCGCCTAATCAATCCCAA CAAACACTAAACGAAGAAGTCAACCAGGTCATTGGACAATTGGGGCGCTTTTGGGGTGGTTTCAGAAAGCAGAGC CAAACTGTCCTTGAAACAGCCCGAAGAGACATCGGGGATGTTGTTACTCAGGCTCAGAAAGAACTCACGAAGCTA GCAAACACTGCTGCGGAGGAACCGAATACTGAACGAGAAACTCGGAGATCAAGTTCTAGAGAATACGAGGAAGAA GCTACACCAATGTCGGCTTCCGTGTCGACCATTCAGGGAACAAGCTCAACTGATTCCTCTACTGAGTCCTCAGGT CATGCCAATGTCCAACCCCAACCTGGCTCGAACACTCAAACTCTTTTCTCTCGACTGCAATCCGCTCTTCCACCA AATGTCTTATCGACGGTACAGAACCATATTCCCGAATCAATTAAAAACGCATCTGAGAACGTCGACCTTACGCAA ATTCGGATGAACCTATTGTCTGAGGTTCAAAGAATCCAGGGTGTAACAAGGGCACAAGCAGAGGAATATGCGCAC AAGAGCGAAGCATTGTTGCGAGAAGCCGTCAAAGAAGCGCAGGAGGTGTTTAAAGATGCTGTCAAGGTTATTCCC CCTGAGGGTTCCAGCGCATCATCAGCCTCCGCGACATCTGGTCTCATCTGGGATGGTACGGACATGTGGACGTTG CCAGGAGTCGCTGAAACGAACTCTGATGCTGCGGATGCGGATGCAAGTTCCGGGAAAGGTAAAGGGAAGAGCGTG GATTCTGGAGCAGCTGCTGTGGCTACGAGGGCGGAAGCTTTGCTCAGAAGGTTAAAACACGATCCTGCTATTGTT CGGGTGGATCCCGGAGTAGATGGGACTACGAAAGACAAGTATACAGCGTGGATAAAGAATGAGGTTGTATCAAAA GGAGGTATTGCAGGCGAAGAATGGCGAACGGTAATTTCCAAGAGCTTGGACGACAGCATCGATGGTCAAGCTCTA ACGAGTTTGAAGGACGTGCTCGTTCCATCCGAGTTGGCTGAACAAGAATTTTGGCAACGTTTCTTCTTCCGCGTT CATCAGATCAAGGAGGAGGAAGAAAAACGCAAAGCTCTATTACAAGCTAATACCGAGAGTGAGGACGAATTTGAT TGGGACGACGAAGATTCTGAGCATGAAGACGAAAACAAAGGGGAAGTAACAAAAGAGGCAACACCTGCTCAAGAC AAGTCGATGGCAACAATCAATAACCCAGGTCTCGCACCTCCCTCTTCAACGACATCAACGAGAGAAAGCAGCCTT GACAGCTTCGATGTCGTTTCTTCGGCAAATGCCAGTGTTTCTGGAGACAGACGTACTCAACATGTCAAAGCTGCC GAAAAAGACGATGATGAAGATGAAGATGAAGATGAAGATGACAGCGACTGGGAGTAG
Transcript	>AgabiH97\|047160 ATGAACTTCCTTGATACCTACGACATCTCCGCGAGTTCAGCGGGTTCTTCGACCCCTCCGCCTAATCAATCCCAA CAAACACTAAACGAAGAAGTCAACCAGGTCATTGGACAATTGGGGCGCTTTTGGGGTGGTTTCAGAAAGCAGAGC CAAACTGTCCTTGAAACAGCCCGAAGAGACATCGGGGATGTTGTTACTCAGGCTCAGAAAGAACTCACGAAGCTA GCAAACACTGCTGCGGAGGAACCGAATACTGAACGAGAAACTCGGAGATCAAGTTCTAGAGAATACGAGGAAGAA GCTACACCAATGTCGGCTTCCGTGTCGACCATTCAGGGAACAAGCTCAACTGATTCCTCTACTGAGTCCTCAGGT CATGCCAATGTCCAACCCCAACCTGGCTCGAACACTCAAACTCTTTTCTCTCGACTGCAATCCGCTCTTCCACCA AATGTCTTATCGACGGTACAGAACCATATTCCCGAATCAATTAAAAACGCATCTGAGAACGTCGACCTTACGCAA ATTCGGATGAACCTATTGTCTGAGGTTCAAAGAATCCAGGGTGTAACAAGGGCACAAGCAGAGGAATATGCGCAC AAGAGCGAAGCATTGTTGCGAGAAGCCGTCAAAGAAGCGCAGGAGGTGTTTAAAGATGCTGTCAAGGTTATTCCC CCTGAGGGTTCCAGCGCATCATCAGCCTCCGCGACATCTGGTCTCATCTGGGATGGTACGGACATGTGGACGTTG CCAGGAGTCGCTGAAACGAACTCTGATGCTGCGGATGCGGATGCAAGTTCCGGGAAAGGTAAAGGGAAGAGCGTG GATTCTGGAGCAGCTGCTGTGGCTACGAGGGCGGAAGCTTTGCTCAGAAGGTTAAAACACGATCCTGCTATTGTT CGGGTGGATCCCGGAGTAGATGGGACTACGAAAGACAAGTATACAGCGTGGATAAAGAATGAGGTTGTATCAAAA GGAGGTATTGCAGGCGAAGAATGGCGAACGGTAATTTCCAAGAGCTTGGACGACAGCATCGATGGTCAAGCTCTA ACGAGTTTGAAGGACGTGCTCGTTCCATCCGAGTTGGCTGAACAAGAATTTTGGCAACGTTTCTTCTTCCGCGTT CATCAGATCAAGGAGGAGGAAGAAAAACGCAAAGCTCTATTACAAGCTAATACCGAGAGTGAGGACGAATTTGAT TGGGACGACGAAGATTCTGAGCATGAAGACGAAAACAAAGGGGAAGTAACAAAAGAGGCAACACCTGCTCAAGAC AAGTCGATGGCAACAATCAATAACCCAGGTCTCGCACCTCCCTCTTCAACGACATCAACGAGAGAAAGCAGCCTT GACAGCTTCGATGTCGTTTCTTCGGCAAATGCCAGTGTTTCTGGAGACAGACGTACTCAACATGTCAAAGCTGCC GAAAAAGACGATGATGAAGATGAAGATGAAGATGAAGATGACAGCGACTGGGAGTAG
Gene	>AgabiH97\|047160 ATGAACTTCCTTGATACCTACGACATCTCCGCGAGTTCAGCGGGTTCTTCGACCCCTCCGCCTAATCAATCCCAA CAAACACTAAACGAAGAAGTCAACCAGGTCATTGGACAATTGGGGCGCTTTTGGGGTGGTTTCAGAAAGCAGGCG AGTTTCTCATTGTCCACTAGGCCACTGTTTGTAGAGGTTATTCGAATACTCATCTGTCATTCAGAGCCAAACTGT CCTTGAAACAGCCCGAAGAGACATCGGGGATGTTGTTACTCAGGCTCAGAAAGAACTCACGAAGCTAGCAAACAC TGCTGCGGAGGAACCGAATACTGAACGAGAAACTCGGAGATCAAGTTCTAGAGAATACGAGGAAGAAGCTACACC AATGTCGGCTTCCGTGTCGACCATTCAGGGAACAAGCTCAACTGATTCCTCTACTGAGTCCTCAGGTCATGCCAA TGTCCAACCCCAACCTGGCTCGAACACTCAAACTCTTTTCTCTCGACTGCAATCCGCTCTTCCACCAAATGTCTT ATCGACGGTACAGAACCATATTCCCGAATCAATTAAAAACGCATCTGAGAACGTCGACCTTACGCAAATTCGGAT GAACCTATTGTCTGAGGTTCAAAGAATCCAGGGTGTAACAAGGGCACAAGCAGAGGAATATGCGCACAAGAGCGA AGCATTGTTGCGAGAAGCCGTCAAAGAAGCGCAGGAGGTGTTTAAAGATGCTGTCAAGGTTATTCCCCCTGAGGG TTCCAGCGCATCATCAGCCTCCGCGACATCTGGTCTCATCTGGGATGGTACGGACATGTGGACGTTGCCAGGAGT CGCTGAAACGAACTCTGATGCTGCGGATGCGGATGCAAGTTCCGGGAAAGGTAAAGGGAAGAGCGTGGATTCTGG AGCAGCTGCTGTGGCTACGAGGGCGGAAGCTTTGCTCAGAAGGTTAAAACACGATCCTGCTATTGTTCGGGTGGA TCCCGGAGTAGATGGGACTACGAAAGACAAGTATACAGCGTGGATAAAGAATGAGGTTGTATCAAAAGGAGGTAT TGCAGGCGAAGAATGGCGAACGGTAATTTCCAAGAGCTTGGACGACAGCATCGATGGTCAAGCTCTAACGAGTTT GAAGGACGTGCTCGGTAAGTATTACTTCAAAAGTACGTCGTCCGATGTGTACGGGGAGCTCATGAAACTTTGTAT TAGTTCCATCCGAGTTGGCTGAACAAGAATTTTGGCAACGTTTCTTCTTCCGCGTTCATCAGATCAAGGAGGAGG AAGAAAAACGCAAAGCTCTATTACAAGGTCCGAGCTACCATCTTTATCCGGTTTTATGACCACTTATAATGTATA ACTAGCTAATACCGAGAGTGAGGACGAATTTGATTGGGACGACGAAGATTCTGAGCATGAAGACGAAAACAAAGG GGAAGTAACAAAAGAGGCAACACCTGCTCAAGACAAGGTACGCTGTATTCTTTCTCTTGATGTTGACAAAGCTGA CTGCTCTTCTTAAAAGTCGATGGCAACAATCAATAACCCAGGTCTCGCACCTCCCTCTTCAACGACATCAACGAG AGAAAGCAGCCTTGACAGCTTCGATGTCGTTTCTTCGGCAAATGCCAGTGTTTCTGGAGACAGACGTACTCAACA TGTCAAAGCTGCCGAAAAAGACGATGATGAAGATGAAGATGAAGATGAAGATGACAGCGACTGGGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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