© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|047070 |
| Gene name | |
| Location | scaffold_2:2123212..2124021 |
| Strand | + |
| Gene length (bp) | 809 |
| Transcript length (bp) | 513 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05856 | ARPC4 | ARP2/3 complex 20 kDa subunit (ARPC4) | 1.8E-79 | 1 | 166 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59999|ARPC4_MOUSE | Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|P59998|ARPC4_HUMAN | Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|Q148J6|ARPC4_BOVIN | Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|P58798|ARPC4_CAEEL | Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1 | 1 | 169 | 5.0E-90 |
| sp|Q92352|ARPC4_SCHPO | Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1 | 1 | 167 | 1.0E-83 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59999|ARPC4_MOUSE | Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|P59998|ARPC4_HUMAN | Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|Q148J6|ARPC4_BOVIN | Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3 | 1 | 165 | 4.0E-91 |
| sp|P58798|ARPC4_CAEEL | Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1 | 1 | 169 | 5.0E-90 |
| sp|Q92352|ARPC4_SCHPO | Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1 | 1 | 167 | 1.0E-83 |
| sp|O96625|ARPC4_DICDI | Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1 | 1 | 165 | 1.0E-80 |
| sp|P33204|ARPC4_YEAST | Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1 SV=2 | 1 | 165 | 2.0E-79 |
| sp|F4JUL9|ARPC4_ARATH | Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1 | 1 | 165 | 2.0E-69 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | Yes |
| GO:0030041 | actin filament polymerization | Yes |
| GO:0015629 | actin cytoskeleton | Yes |
| GO:0005885 | Arp2/3 protein complex | Yes |
| GO:0097435 | supramolecular fiber organization | No |
| GO:0007015 | actin filament organization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0005575 | cellular_component | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0008154 | actin polymerization or depolymerization | No |
| GO:0005856 | cytoskeleton | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0051258 | protein polymerization | No |
| GO:0043226 | organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0032991 | protein-containing complex | No |
| GO:0045010 | actin nucleation | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|047070 MSNVLRPYLAAVRSTLTAALTLEDFSSQVVERHNKPEVETRASKEVLLNPLVISRNENERVLIEPSVNSIRLSIK IKQADEIERILCHKFTRFMMQRAENFVVLRRKPVPGYDISFLITNTHTETMLKHKIVDFIIQFMEEVDKEISEMK LSLNARARIVAESYLTAVNA* |
| Coding | >AgabiH97|047070 ATGTCAAACGTCTTGCGCCCATATCTCGCAGCAGTCCGGTCCACGCTGACCGCAGCATTGACCCTTGAGGACTTT TCGTCCCAGGTAGTTGAACGCCACAACAAACCAGAAGTAGAAACGAGAGCCTCAAAAGAAGTGCTCTTAAACCCC TTGGTCATCTCTCGTAACGAGAACGAAAGAGTTCTGATCGAGCCGTCCGTGAATTCCATTAGGCTGAGCATTAAG ATCAAGCAAGCGGACGAAATCGAACGTATTCTTTGTCACAAATTCACCAGATTTATGATGCAGCGAGCCGAGAAC TTCGTTGTTCTAAGACGGAAGCCGGTCCCAGGCTATGATATATCTTTTTTGATCACAAACACCCATACAGAGACT ATGCTAAAGCACAAGATCGTCGATTTCATTATCCAATTCATGGAAGAGGTCGATAAAGAAATTAGTGAGATGAAA CTTAGTCTGAACGCTCGAGCACGTATAGTTGCGGAGTCTTATCTGACTGCGGTCAATGCATAG |
| Transcript | >AgabiH97|047070 ATGTCAAACGTCTTGCGCCCATATCTCGCAGCAGTCCGGTCCACGCTGACCGCAGCATTGACCCTTGAGGACTTT TCGTCCCAGGTAGTTGAACGCCACAACAAACCAGAAGTAGAAACGAGAGCCTCAAAAGAAGTGCTCTTAAACCCC TTGGTCATCTCTCGTAACGAGAACGAAAGAGTTCTGATCGAGCCGTCCGTGAATTCCATTAGGCTGAGCATTAAG ATCAAGCAAGCGGACGAAATCGAACGTATTCTTTGTCACAAATTCACCAGATTTATGATGCAGCGAGCCGAGAAC TTCGTTGTTCTAAGACGGAAGCCGGTCCCAGGCTATGATATATCTTTTTTGATCACAAACACCCATACAGAGACT ATGCTAAAGCACAAGATCGTCGATTTCATTATCCAATTCATGGAAGAGGTCGATAAAGAAATTAGTGAGATGAAA CTTAGTCTGAACGCTCGAGCACGTATAGTTGCGGAGTCTTATCTGACTGCGGTCAATGCATAG |
| Gene | >AgabiH97|047070 ATGGTAAGTCCATCGATTATGCCATACTTCCGGTTGACAAAGCGCCGTAGTCAAACGTCTTGCGCCCATATCTCG CAGCAGTCCGGTCCACGCTGACCGCAGCATTGACCCTTGAGGACTTTTCGTCCCAGGTGCGCAGATCGCTCGAGT TCACGAATCGGTCTCATCGTTCACCAGGTAGTTGAACGCCACAACAAACCAGAAGTAGAAACGAGGTGCGTCTCA TTCTTTCGATCTCTTATTCGGCTAATGTCTGGCCAGAGCCTCAAAAGAAGTGCTCTTAAACCCCTTGGTCATCTC TCGTAACGAGAACGAAAGAGTTCTGATCGAGCCGTCCGTGAATTCCATTAGGCTGAGCATTAAGATCAAGCAAGC GGACGAAATCGAACGTATTCTTTGTCACAAATTCACCAGATTTATGATGCAGCGAGCCGAGAACTTCGTTGTTCT AAGACGGAAGCCGGTCCCAGTCCGTCTTCATCCCTCCCCCCTTGGAAAATAACTCAATCCATAGTCCAGGGCTAT GATATATCTTTTTTGATCACAAACACCCATACAGAGACTATGCTAAAGCACAAGATCGTCGATTTCATTATCCAG TACGTGTCGTATTTCCAGTATATGCTTTGTTTCTCAATGTGGTCGCAACTTAGATTCATGGAAGAGGTCGATAAA GAAATTAGTGAGATGAAACTTAGTCTGAACGCTCGAGCACGTATAGTTGCGGAGTCTTATCTGACTGCGGTGTGT CATTTCATTCCTTCCAGCCTTGTTATGCCTCTCATTCTCGACTACAGGTCAATGCATAG |