Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|047000
Gene name
Locationscaffold_2:2104708..2105722
Strand+
Gene length (bp)1014
Transcript length (bp)762
Coding sequence length (bp)762
Protein length (aa) 254

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 2.1E-16 165 226

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bos1 PE=3 SV=1 2 252 2.0E-42
sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BOS1 PE=3 SV=1 1 252 3.0E-26
sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BOS1 PE=3 SV=1 1 252 2.0E-19
sp|O35166|GOSR2_MOUSE Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=1 SV=2 1 252 3.0E-18
sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2 1 252 9.0E-16
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bos1 PE=3 SV=1 2 252 2.0E-42
sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BOS1 PE=3 SV=1 1 252 3.0E-26
sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BOS1 PE=3 SV=1 1 252 2.0E-19
sp|O35166|GOSR2_MOUSE Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=1 SV=2 1 252 3.0E-18
sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2 1 252 9.0E-16
sp|O14653|GOSR2_HUMAN Golgi SNAP receptor complex member 2 OS=Homo sapiens GN=GOSR2 PE=1 SV=2 171 252 7.0E-14
sp|Q75CY3|BOS1_ASHGO Protein transport protein BOS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BOS1 PE=3 SV=2 1 253 4.0E-13
sp|P25385|BOS1_YEAST Protein transport protein BOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BOS1 PE=1 SV=1 1 234 4.0E-13
sp|Q6FKA1|BOS1_CANGA Protein transport protein BOS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BOS1 PE=3 SV=1 1 252 7.0E-13
sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila melanogaster GN=Membrin PE=2 SV=1 151 252 2.0E-12
sp|A8XP14|GOSR2_CAEBR Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis briggsae GN=gosr-2.1 PE=3 SV=1 1 249 8.0E-10
sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1 158 247 2.0E-08
sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1 171 247 4.0E-07
sp|Q6CRX0|BOS1_KLULA Protein transport protein BOS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=BOS1 PE=3 SV=1 1 230 8.0E-07
sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis elegans GN=gosr-2.1 PE=3 SV=1 1 249 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

Domain # Start End Length
1 233 252 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|047000
MNSLYTSGVRQTTSLQADLERLRNGDVSASLLGQISASLAAMSRTIDDYDAMAKREIIKAKQEKAQMRVQKFRLD
YSEFRIQFEKLKADVLEQQSTSQRAELISSSATSNTTTPTSDTRRRFQTTPGPSTLHPGLRPSNTSDTISESPFR
SSSPYGNYGQESRALDEHTFIHNTDSKLDEFLAQGREVLDNLVDQRKMLKGTRKRLLDAANTLGLSRQVIGWIER
RSTQDTYIFGGGAVFTFFCFYLIWHYFG*
Coding >AgabiH97|047000
ATGAACTCTCTATACACATCTGGTGTACGACAAACAACATCTCTTCAAGCCGACCTCGAGCGTCTACGGAATGGG
GACGTTTCCGCCTCACTCCTTGGACAGATATCGGCTTCTCTAGCGGCTATGAGTCGGACTATAGACGACTATGAT
GCAATGGCCAAACGAGAGATTATTAAAGCCAAACAGGAAAAGGCGCAAATGCGTGTGCAGAAATTTCGGTTGGAT
TATTCAGAGTTTCGGATTCAGTTTGAGAAACTCAAGGCGGATGTATTGGAACAGCAATCAACTTCTCAACGGGCG
GAACTCATCTCAAGTTCGGCGACTTCAAATACTACTACTCCTACATCCGACACACGACGACGTTTCCAAACGACA
CCAGGACCTTCAACACTTCATCCCGGTCTCCGACCTTCCAACACCTCCGATACCATTTCAGAATCCCCCTTCCGT
TCTTCATCACCTTATGGCAATTATGGTCAAGAGTCCCGCGCCTTGGACGAACATACTTTCATCCACAATACAGAT
AGCAAACTAGATGAGTTCTTAGCGCAGGGAAGGGAAGTGTTGGATAATTTGGTGGATCAGAGGAAGATGTTGAAG
GGGACTCGTAAACGACTGTTGGATGCTGCGAACACTCTTGGGTTGAGTCGACAAGTAATTGGATGGATTGAAAGA
CGAAGTACGCAAGACACGTATATCTTCGGAGGAGGAGCCGTTTTCACATTCTTCTGTTTCTATCTCATATGGCAC
TATTTCGGTTAA
Transcript >AgabiH97|047000
ATGAACTCTCTATACACATCTGGTGTACGACAAACAACATCTCTTCAAGCCGACCTCGAGCGTCTACGGAATGGG
GACGTTTCCGCCTCACTCCTTGGACAGATATCGGCTTCTCTAGCGGCTATGAGTCGGACTATAGACGACTATGAT
GCAATGGCCAAACGAGAGATTATTAAAGCCAAACAGGAAAAGGCGCAAATGCGTGTGCAGAAATTTCGGTTGGAT
TATTCAGAGTTTCGGATTCAGTTTGAGAAACTCAAGGCGGATGTATTGGAACAGCAATCAACTTCTCAACGGGCG
GAACTCATCTCAAGTTCGGCGACTTCAAATACTACTACTCCTACATCCGACACACGACGACGTTTCCAAACGACA
CCAGGACCTTCAACACTTCATCCCGGTCTCCGACCTTCCAACACCTCCGATACCATTTCAGAATCCCCCTTCCGT
TCTTCATCACCTTATGGCAATTATGGTCAAGAGTCCCGCGCCTTGGACGAACATACTTTCATCCACAATACAGAT
AGCAAACTAGATGAGTTCTTAGCGCAGGGAAGGGAAGTGTTGGATAATTTGGTGGATCAGAGGAAGATGTTGAAG
GGGACTCGTAAACGACTGTTGGATGCTGCGAACACTCTTGGGTTGAGTCGACAAGTAATTGGATGGATTGAAAGA
CGAAGTACGCAAGACACGTATATCTTCGGAGGAGGAGCCGTTTTCACATTCTTCTGTTTCTATCTCATATGGCAC
TATTTCGGTTAA
Gene >AgabiH97|047000
ATGAACTCTCTATACACATCTGGTGTACGACAAACAACATCTCTTCAAGCCGACCTCGAGCGTCTACGGAATGGG
GACGTTTCCGCCTCACTCCTTGGTGCGTAGCCCATTTCATACCCATGCATCGTATAGCAGCGGTGGTCATATTTA
TTTTGTTTTGTTTTGTTTTTGTTAGGACAGATATCGGCTTCTCTAGCGGCTATGAGTCGGACTATAGACGACTAT
GATGCAATGGCCAAACGAGAGATTATTAAAGCCAAACAGGAAAAGGCGCAAATGTGCGCAGTAACTCCAATTCTT
TGCAGTTAAGAGAAAAGATTAAAATGGAAAGCGTATAGGCGTGTGCAGAAATTTCGGTTGGATTATTCAGAGTTT
CGGATTCAGTTTGAGAAACTCAAGGCGGATGTATTGGAACAGGTGAGTTCTTTTTGTGTTGCACGAGTAGCTTTA
TGGAAACCTATGCGTCTGCATAAAAGCAATCAACTTCTCAACGGGCGGAACTCATCTCAAGTTCGGCGACTTCAA
ATACTACTACTCCTACATCCGACACACGACGACGTTTCCAAACGACACCAGGACCTTCAACACTTCATCCCGGTC
TCCGACCTTCCAACACCTCCGATACCATTTCAGAATCCCCCTTCCGTTCTTCATCACCTTATGGCAATTATGGTC
AAGAGTCCCGCGCCTTGGACGAACATACTTTCATCCACAATACAGATAGCAAACTAGATGAGTTCTTAGCGCAGG
GAAGGGAAGTGTTGGATAATTTGGTGGATCAGAGGAAGATGTTGAAGGGGACTCGTAAACGACTGTTGGATGCTG
CGAACACTCTTGGGTTGAGTCGACAAGTAATTGGATGGATTGAAAGACGAAGGTGCATTTTCCATTATCACTTTT
CCCTAAAGCACGCCCTAAAAACTGTTGTTCAGTACGCAAGACACGTATATCTTCGGAGGAGGAGCCGTTTTCACA
TTCTTCTGTTTCTATCTCATATGGCACTATTTCGGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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