Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|046840
Gene name
Location	scaffold_2:2059852..2061185
Strand	+
Gene length (bp)	1333
Transcript length (bp)	1224
Coding sequence length (bp)	1224
Protein length (aa)	408

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07859	Abhydrolase_3	alpha/beta hydrolase fold	4.9E-19	139	356
PF10340	Say1_Mug180	Steryl acetyl hydrolase	4.1E-08	136	264

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|P18773|EST_ACILW	Esterase OS=Acinetobacter lwoffii GN=est PE=3 SV=2	137	403	1.0E-09

GO

GO Term	Description	Terminal node
GO:0016787	hydrolase activity	Yes
GO:0003824	catalytic activity	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	13	35	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	14.86	7.51	22.20
Initials	Initials knots	31.00	17.36	44.64
Pileal_Stipeal_center	Stage I stipe center	25.36	13.86	36.87
Pileal_Stipeal_shell	Stage I stipe shell	84.17	50.42	117.91
DIF_stipe_center	Stage II stipe center	17.33	9.03	25.63
DIF_stipe_shell	Stage II stipe shell	15.94	8.23	23.66
DIF_stipe_skin	Stage II stipe skin	26.05	13.89	38.21
DIF_cap_skin	Stage II cap skin	90.98	54.63	127.33
DIF_cap_tissue	Stage II cap tissue	69.21	41.14	97.27
DIF_gill_tissue	Stage II gill tissue	55.94	32.89	78.99
YFB_stipe_center	Young fruiting body stipe center	18.22	9.56	26.88
YFB_stipe_shell	Young fruiting body stipe shell	15.84	8.17	23.51
YFB_stipe_skin	Young fruiting body stipe skin	24.61	13.42	35.81
YFB_cap_skin	Young fruiting body cap skin	81.78	48.59	114.98
YFB_cap_tissue	Young fruiting body cap tissue	46.26	27.02	65.50
YFB_gill_tissue	Young fruiting body gill tissue	84.57	50.17	118.97
YFB_veil	Young fruiting body veil	70.91	39.49	102.32

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.000613	yes
Casing	YFB_stipe_center	0.658595	no
Casing	YFB_stipe_shell	0.916850	no
Casing	YFB_stipe_skin	0.126023	no
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.015529	yes
Casing	Pileal_Stipeal_center	0.099273	no
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.759663	no
Casing	DIF_stipe_shell	0.908752	no
Casing	DIF_stipe_skin	0.081058	no
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.000613	yes
DIF_gill_tissue	YFB_stipe_shell	0.000613	yes
DIF_gill_tissue	YFB_stipe_skin	0.003365	yes
DIF_gill_tissue	YFB_cap_skin	0.204470	no
DIF_gill_tissue	YFB_cap_tissue	0.627172	no
DIF_gill_tissue	YFB_gill_tissue	0.155976	no
DIF_gill_tissue	YFB_veil	0.516364	no
YFB_stipe_center	YFB_stipe_shell	0.791551	no
YFB_stipe_center	YFB_stipe_skin	0.439228	no
YFB_stipe_center	YFB_cap_skin	0.000613	yes
YFB_stipe_center	YFB_cap_tissue	0.000613	yes
YFB_stipe_center	YFB_gill_tissue	0.000613	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.210655	no
YFB_stipe_shell	YFB_cap_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_tissue	0.000613	yes
YFB_stipe_shell	YFB_gill_tissue	0.000613	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.000613	yes
YFB_stipe_skin	YFB_cap_tissue	0.029408	yes
YFB_stipe_skin	YFB_gill_tissue	0.000613	yes
YFB_stipe_skin	YFB_veil	0.000613	yes
YFB_cap_skin	YFB_cap_tissue	0.034142	yes
YFB_cap_skin	YFB_gill_tissue	0.952205	no
YFB_cap_skin	YFB_veil	0.748603	no
YFB_cap_tissue	YFB_gill_tissue	0.025205	yes
YFB_cap_tissue	YFB_veil	0.164242	no
YFB_gill_tissue	YFB_veil	0.664989	no
Initials	DIF_gill_tissue	0.037818	yes
Initials	YFB_stipe_center	0.093666	no
Initials	YFB_stipe_shell	0.031088	yes
Initials	YFB_stipe_skin	0.584875	no
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.208336	no
Initials	YFB_gill_tissue	0.000613	yes
Initials	YFB_veil	0.002084	yes
Initials	Pileal_Stipeal_center	0.647578	no
Initials	Pileal_Stipeal_shell	0.000613	yes
Initials	DIF_stipe_center	0.062420	no
Initials	DIF_stipe_shell	0.034142	yes
Initials	DIF_stipe_skin	0.707979	no
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.004160	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.002951	yes
Pileal_Stipeal_center	YFB_stipe_center	0.375914	no
Pileal_Stipeal_center	YFB_stipe_shell	0.172692	no
Pileal_Stipeal_center	YFB_stipe_skin	0.961538	no
Pileal_Stipeal_center	YFB_cap_skin	0.000613	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.042041	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_veil	0.000613	yes
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_center	0.287794	no
Pileal_Stipeal_center	DIF_stipe_shell	0.177942	no
Pileal_Stipeal_center	DIF_stipe_skin	0.966171	no
Pileal_Stipeal_center	DIF_cap_skin	0.000613	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	DIF_gill_tissue	0.156648	no
Pileal_Stipeal_shell	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.000613	yes
Pileal_Stipeal_shell	YFB_cap_skin	0.959371	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.026461	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.992912	no
Pileal_Stipeal_shell	YFB_veil	0.681292	no
Pileal_Stipeal_shell	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.000613	yes
Pileal_Stipeal_shell	DIF_cap_skin	0.875116	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.610673	no
DIF_stipe_center	DIF_gill_tissue	0.000613	yes
DIF_stipe_center	YFB_stipe_center	0.935922	no
DIF_stipe_center	YFB_stipe_shell	0.878758	no
DIF_stipe_center	YFB_stipe_skin	0.340893	no
DIF_stipe_center	YFB_cap_skin	0.000613	yes
DIF_stipe_center	YFB_cap_tissue	0.000613	yes
DIF_stipe_center	YFB_gill_tissue	0.000613	yes
DIF_stipe_center	YFB_veil	0.000613	yes
DIF_stipe_center	DIF_stipe_shell	0.890203	no
DIF_stipe_center	DIF_stipe_skin	0.238427	no
DIF_stipe_center	DIF_cap_skin	0.000613	yes
DIF_stipe_center	DIF_cap_tissue	0.000613	yes
DIF_stipe_shell	DIF_gill_tissue	0.000613	yes
DIF_stipe_shell	YFB_stipe_center	0.805243	no
DIF_stipe_shell	YFB_stipe_shell	0.991714	no
DIF_stipe_shell	YFB_stipe_skin	0.221032	no
DIF_stipe_shell	YFB_cap_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_tissue	0.000613	yes
DIF_stipe_shell	YFB_gill_tissue	0.000613	yes
DIF_stipe_shell	YFB_veil	0.000613	yes
DIF_stipe_shell	DIF_stipe_skin	0.147547	no
DIF_stipe_shell	DIF_cap_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_tissue	0.000613	yes
DIF_stipe_skin	DIF_gill_tissue	0.003765	yes
DIF_stipe_skin	YFB_stipe_center	0.320070	no
DIF_stipe_skin	YFB_stipe_shell	0.139707	no
DIF_stipe_skin	YFB_stipe_skin	0.922644	no
DIF_stipe_skin	YFB_cap_skin	0.000613	yes
DIF_stipe_skin	YFB_cap_tissue	0.046536	yes
DIF_stipe_skin	YFB_gill_tissue	0.000613	yes
DIF_stipe_skin	YFB_veil	0.000613	yes
DIF_stipe_skin	DIF_cap_skin	0.000613	yes
DIF_stipe_skin	DIF_cap_tissue	0.000613	yes
DIF_cap_skin	DIF_gill_tissue	0.073760	no
DIF_cap_skin	YFB_stipe_center	0.000613	yes
DIF_cap_skin	YFB_stipe_shell	0.000613	yes
DIF_cap_skin	YFB_stipe_skin	0.000613	yes
DIF_cap_skin	YFB_cap_skin	0.818757	no
DIF_cap_skin	YFB_cap_tissue	0.010093	yes
DIF_cap_skin	YFB_gill_tissue	0.884832	no
DIF_cap_skin	YFB_veil	0.490558	no
DIF_cap_skin	DIF_cap_tissue	0.415808	no
DIF_cap_tissue	DIF_gill_tissue	0.555323	no
DIF_cap_tissue	YFB_stipe_center	0.000613	yes
DIF_cap_tissue	YFB_stipe_shell	0.000613	yes
DIF_cap_tissue	YFB_stipe_skin	0.000613	yes
DIF_cap_tissue	YFB_cap_skin	0.682348	no
DIF_cap_tissue	YFB_cap_tissue	0.172433	no
DIF_cap_tissue	YFB_gill_tissue	0.593139	no
DIF_cap_tissue	YFB_veil	0.965907	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|046840 MTHAYSKQPWRALFLAYQLSALFVRFPLWLLLALPRSLRPRQSWDVRRTVLVYALRHLFHVQGQTGRLRPLPDHR AIPPGNGVNGVWVPPLSEELVVGKLRKWAEHVNAVSIPIPGYWMHKKGTSIDVASTPLPGEKVILTLHGGGYTQL SAHPNDVSAAIPRGLLKHVKSVNRLLSLEYRLSSAEPFSVAHPFPTALLDALAGYVYLVNVVGFSPSNIIIEGDS AGANLAQSLTRYLTEYKGTPGLPMPPGSLVLLSPWADLGRSHDNLPAGSASTCIASDYIPNPSTPHFRYAVRAMV GPHGLEEAEINPYISPASLNPTLTVHFKDFPRTFIVAGGAEVLLDQIRSLRDKMVRDVGEGNGTIDEAGKVRYLE VPDGIHDYLIFSWHEPERTHTLKAIAEWIDLA*
Coding	>AgabiH97|046840 ATGACCCACGCCTACAGCAAGCAGCCGTGGAGGGCCCTCTTTCTCGCCTACCAACTCTCCGCCCTTTTCGTCCGC TTTCCGCTTTGGCTGCTCCTTGCCCTTCCAAGGTCCCTCCGCCCTAGGCAGTCCTGGGACGTGCGCCGCACCGTG TTGGTTTATGCGTTGCGCCACCTCTTTCATGTTCAGGGACAGACGGGCCGACTGCGCCCCCTCCCAGACCACAGG GCCATACCTCCAGGAAACGGCGTCAATGGAGTTTGGGTCCCACCCCTTTCCGAGGAACTCGTAGTTGGAAAGCTT CGCAAGTGGGCAGAGCACGTCAATGCCGTCTCTATACCTATCCCAGGCTACTGGATGCATAAAAAAGGCACTTCC ATTGACGTTGCCTCTACCCCCCTTCCAGGAGAGAAAGTTATCCTTACTTTGCATGGCGGCGGCTATACCCAGTTA TCCGCTCATCCAAATGATGTTTCCGCTGCCATCCCACGCGGTCTCTTGAAGCACGTGAAATCTGTCAACCGTTTA CTATCCCTTGAATATCGTCTTTCCTCTGCCGAGCCGTTCAGTGTTGCCCACCCTTTCCCTACCGCTTTACTCGAT GCTCTAGCGGGCTACGTTTACCTTGTCAACGTCGTTGGATTCTCTCCTTCCAATATTATCATCGAGGGTGACTCT GCAGGCGCCAACCTGGCACAATCGCTCACTCGTTATCTCACGGAATACAAGGGAACGCCAGGCCTACCCATGCCA CCTGGCTCCTTGGTGCTACTCTCTCCTTGGGCCGATCTGGGAAGGAGCCACGATAACCTCCCAGCTGGCTCTGCT TCTACTTGCATTGCATCTGACTATATCCCAAATCCCTCTACACCGCACTTCAGATATGCCGTGCGCGCCATGGTC GGGCCCCACGGACTCGAGGAGGCTGAGATTAATCCATACATCTCTCCCGCCTCCTTGAATCCCACTCTTACCGTT CACTTCAAGGATTTCCCGAGGACTTTCATAGTTGCCGGCGGCGCAGAAGTGCTTCTCGATCAAATACGCTCCTTA CGCGACAAGATGGTCAGGGATGTAGGAGAAGGGAATGGCACAATCGACGAAGCAGGCAAGGTTCGCTATTTGGAG GTACCGGATGGTATTCACGATTACCTCATATTCTCTTGGCATGAGCCGGAAAGGACACATACTTTGAAAGCAATT GCGGAGTGGATCGACCTTGCTTAG
Transcript	>AgabiH97|046840 ATGACCCACGCCTACAGCAAGCAGCCGTGGAGGGCCCTCTTTCTCGCCTACCAACTCTCCGCCCTTTTCGTCCGC TTTCCGCTTTGGCTGCTCCTTGCCCTTCCAAGGTCCCTCCGCCCTAGGCAGTCCTGGGACGTGCGCCGCACCGTG TTGGTTTATGCGTTGCGCCACCTCTTTCATGTTCAGGGACAGACGGGCCGACTGCGCCCCCTCCCAGACCACAGG GCCATACCTCCAGGAAACGGCGTCAATGGAGTTTGGGTCCCACCCCTTTCCGAGGAACTCGTAGTTGGAAAGCTT CGCAAGTGGGCAGAGCACGTCAATGCCGTCTCTATACCTATCCCAGGCTACTGGATGCATAAAAAAGGCACTTCC ATTGACGTTGCCTCTACCCCCCTTCCAGGAGAGAAAGTTATCCTTACTTTGCATGGCGGCGGCTATACCCAGTTA TCCGCTCATCCAAATGATGTTTCCGCTGCCATCCCACGCGGTCTCTTGAAGCACGTGAAATCTGTCAACCGTTTA CTATCCCTTGAATATCGTCTTTCCTCTGCCGAGCCGTTCAGTGTTGCCCACCCTTTCCCTACCGCTTTACTCGAT GCTCTAGCGGGCTACGTTTACCTTGTCAACGTCGTTGGATTCTCTCCTTCCAATATTATCATCGAGGGTGACTCT GCAGGCGCCAACCTGGCACAATCGCTCACTCGTTATCTCACGGAATACAAGGGAACGCCAGGCCTACCCATGCCA CCTGGCTCCTTGGTGCTACTCTCTCCTTGGGCCGATCTGGGAAGGAGCCACGATAACCTCCCAGCTGGCTCTGCT TCTACTTGCATTGCATCTGACTATATCCCAAATCCCTCTACACCGCACTTCAGATATGCCGTGCGCGCCATGGTC GGGCCCCACGGACTCGAGGAGGCTGAGATTAATCCATACATCTCTCCCGCCTCCTTGAATCCCACTCTTACCGTT CACTTCAAGGATTTCCCGAGGACTTTCATAGTTGCCGGCGGCGCAGAAGTGCTTCTCGATCAAATACGCTCCTTA CGCGACAAGATGGTCAGGGATGTAGGAGAAGGGAATGGCACAATCGACGAAGCAGGCAAGGTTCGCTATTTGGAG GTACCGGATGGTATTCACGATTACCTCATATTCTCTTGGCATGAGCCGGAAAGGACACATACTTTGAAAGCAATT GCGGAGTGGATCGACCTTGCTTAG
Gene	>AgabiH97|046840 ATGACCCACGCCTACAGCAAGCAGCCGTGGAGGGCCCTCTTTCTCGCCTACCAACTCTCCGCCCTTTTCGTCCGC TTTCCGCTTTGGCTGCTCCTTGCCCTTCCAAGGTCTTTTTTTCTCCTTTTCGCTCAACTCTCTGCCCACTCACTC ATTTTCCAGGTCCCTCCGCCCTAGGCAGTCCTGGGACGTGCGCCGCACCGTGTTGGTTTATGCGTTGCGCCACCT CTTTCATGTTCAGGGACAGTGAGCCAGCAGCACTTAGGACCCAAGTCATACCATCCCCCTGACTCTTACTCACAG GACGGGCCGACTGCGCCCCCTCCCAGACCACAGGGCCATACCTCCAGGAAACGGCGTCAATGGAGTTTGGGTCCC ACCCCTTTCCGAGGAACTCGTAGTTGGAAAGCTTCGCAAGTGGGCAGAGCACGTCAATGCCGTCTCTATACCTAT CCCAGGCTACTGGATGCATAAAAAAGGCACTTCCATTGACGTTGCCTCTACCCCCCTTCCAGGAGAGAAAGTTAT CCTTACTTTGCATGGCGGCGGCTATACCCAGTTATCCGCTCATCCAAATGATGTTTCCGCTGCCATCCCACGCGG TCTCTTGAAGCACGTGAAATCTGTCAACCGTTTACTATCCCTTGAATATCGTCTTTCCTCTGCCGAGCCGTTCAG TGTTGCCCACCCTTTCCCTACCGCTTTACTCGATGCTCTAGCGGGCTACGTTTACCTTGTCAACGTCGTTGGATT CTCTCCTTCCAATATTATCATCGAGGGTGACTCTGCAGGCGCCAACCTGGCACAATCGCTCACTCGTTATCTCAC GGAATACAAGGGAACGCCAGGCCTACCCATGCCACCTGGCTCCTTGGTGCTACTCTCTCCTTGGGCCGATCTGGG AAGGAGCCACGATAACCTCCCAGCTGGCTCTGCTTCTACTTGCATTGCATCTGACTATATCCCAAATCCCTCTAC ACCGCACTTCAGATATGCCGTGCGCGCCATGGTCGGGCCCCACGGACTCGAGGAGGCTGAGATTAATCCATACAT CTCTCCCGCCTCCTTGAATCCCACTCTTACCGTTCACTTCAAGGATTTCCCGAGGACTTTCATAGTTGCCGGCGG CGCAGAAGTGCTTCTCGATCAAATACGCTCCTTACGCGACAAGATGGTCAGGGATGTAGGAGAAGGGAATGGCAC AATCGACGAAGCAGGCAAGGTTCGCTATTTGGAGGTACCGGATGGTATTCACGATTACCTCATATTCTCTTGGCA TGAGCCGGAAAGGACACATACTTTGAAAGCAATTGCGGAGTGGATCGACCTTGCTTAG