Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|046280
Gene name
Locationscaffold_2:1920520..1922380
Strand+
Gene length (bp)1860
Transcript length (bp)1536
Coding sequence length (bp)1536
Protein length (aa) 512

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17389 Bac_rhamnosid6H Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 1.4E-12 244 464

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|046280
MLTSFIAVVLIAADAFGLAPHGPWDQFNFAPENRISRPTQIHSIQGNVQNADALISSGTANFNGNSSFVTLDFGL
EVGGRVFFDVVHSTGDARLSLSFTESAEFISPLNSDDSCHSVFTMDGDGVQSLPVPLSTGKFMQTISQQRGGFRF
MTIVSHSDGQIGIAGVGVENTFMPHWDDLRAYTGYFFTKDPNFHDPDFLTKLWYAGAYTVQTNTIDANQARQQPC
PSPKGWDNNASGGPVEGPILVDGAKRDRNIWPGDMGISSHTELVALNDILPSKNALLVMFSTQDPATGSLQYSGP
PINAKGSDTYIAWSLIGTHNVWLYTGDIDFVHDVWSNFTKALAFLESQVDETGLMDVPQAFSNDWGRDGGQGHNI
AANVLLYRSLVTGSELARQIGDARLSKAYAANATTLKRDINDLLWDSTAEMFRDNDSSDLLPQDGNAMAVLFNVT
QNQEQVKAISKGLTQFWTDIGPLSPELNDTIIPFVGGFEVQAHFIAGEGERALDLLHQGKS*
Coding >AgabiH97|046280
ATGCTCACGTCTTTCATAGCAGTTGTACTCATTGCGGCCGACGCATTTGGTTTAGCTCCTCATGGACCATGGGAT
CAATTCAACTTCGCACCTGAGAATAGGATCAGCCGTCCAACTCAAATCCATTCTATTCAGGGCAATGTACAGAAT
GCAGATGCTCTGATCAGTTCAGGAACAGCAAATTTCAATGGAAACAGCAGTTTCGTTACCTTGGATTTCGGCCTA
GAGGTTGGCGGCCGTGTTTTCTTTGACGTCGTCCATTCAACCGGGGACGCTCGCCTTTCTCTTTCCTTTACAGAA
TCGGCTGAATTCATCAGTCCTCTCAACTCAGATGATTCGTGTCATTCCGTCTTTACAATGGACGGCGATGGTGTC
CAATCTCTCCCGGTGCCCCTTAGCACAGGGAAATTTATGCAGACTATAAGCCAACAGCGTGGCGGGTTCCGTTTC
ATGACCATCGTAAGCCACTCCGATGGCCAGATTGGCATCGCTGGAGTAGGCGTCGAAAATACATTCATGCCACAT
TGGGACGACTTGCGAGCGTATACTGGGTACTTCTTCACTAAAGATCCCAATTTCCATGATCCGGATTTTCTAACC
AAATTGTGGTACGCTGGAGCATATACAGTCCAGACCAACACCATCGATGCGAACCAAGCTCGGCAGCAGCCTTGT
CCAAGCCCGAAGGGGTGGGACAACAACGCAAGCGGTGGACCAGTTGAAGGACCAATTCTGGTGGATGGTGCAAAG
CGTGATCGAAATATATGGCCTGGTGATATGGGCATATCCAGCCACACGGAGCTTGTGGCTCTGAATGACATCCTT
CCAAGCAAGAACGCGCTTCTCGTCATGTTTTCTACACAGGATCCGGCAACAGGGTCATTACAATATTCTGGTCCA
CCTATCAATGCAAAAGGTAGTGACACATATATTGCTTGGTCCTTGATTGGAACACATAATGTCTGGTTGTACACC
GGAGACATTGACTTCGTCCATGACGTCTGGAGTAATTTTACGAAGGCGCTTGCATTCCTGGAAAGTCAAGTTGAT
GAAACTGGATTGATGGATGTCCCACAAGCGTTTTCCAATGACTGGGGGAGAGACGGAGGACAAGGACATAATATT
GCGGCAAACGTTTTGCTTTATAGGTCTCTCGTAACAGGTTCGGAGTTAGCCCGCCAAATAGGAGATGCCCGTTTG
TCGAAAGCATATGCGGCAAATGCAACGACATTGAAAAGAGATATTAATGATCTGCTTTGGGACAGCACGGCTGAG
ATGTTTCGTGACAACGACTCGTCGGATCTCCTTCCACAAGATGGAAATGCTATGGCAGTCCTGTTTAACGTTACA
CAAAACCAAGAGCAGGTAAAGGCAATTAGCAAAGGCTTGACTCAATTCTGGACAGATATCGGTCCACTGAGTCCC
GAGCTCAATGATACGATTATCCCGTTCGTTGGGGGTTTCGAGGTACAAGCGCATTTTATTGCAGGTGAAGGTGAA
AGGGCTCTTGATTTACTACACCAAGGTAAATCCTAA
Transcript >AgabiH97|046280
ATGCTCACGTCTTTCATAGCAGTTGTACTCATTGCGGCCGACGCATTTGGTTTAGCTCCTCATGGACCATGGGAT
CAATTCAACTTCGCACCTGAGAATAGGATCAGCCGTCCAACTCAAATCCATTCTATTCAGGGCAATGTACAGAAT
GCAGATGCTCTGATCAGTTCAGGAACAGCAAATTTCAATGGAAACAGCAGTTTCGTTACCTTGGATTTCGGCCTA
GAGGTTGGCGGCCGTGTTTTCTTTGACGTCGTCCATTCAACCGGGGACGCTCGCCTTTCTCTTTCCTTTACAGAA
TCGGCTGAATTCATCAGTCCTCTCAACTCAGATGATTCGTGTCATTCCGTCTTTACAATGGACGGCGATGGTGTC
CAATCTCTCCCGGTGCCCCTTAGCACAGGGAAATTTATGCAGACTATAAGCCAACAGCGTGGCGGGTTCCGTTTC
ATGACCATCGTAAGCCACTCCGATGGCCAGATTGGCATCGCTGGAGTAGGCGTCGAAAATACATTCATGCCACAT
TGGGACGACTTGCGAGCGTATACTGGGTACTTCTTCACTAAAGATCCCAATTTCCATGATCCGGATTTTCTAACC
AAATTGTGGTACGCTGGAGCATATACAGTCCAGACCAACACCATCGATGCGAACCAAGCTCGGCAGCAGCCTTGT
CCAAGCCCGAAGGGGTGGGACAACAACGCAAGCGGTGGACCAGTTGAAGGACCAATTCTGGTGGATGGTGCAAAG
CGTGATCGAAATATATGGCCTGGTGATATGGGCATATCCAGCCACACGGAGCTTGTGGCTCTGAATGACATCCTT
CCAAGCAAGAACGCGCTTCTCGTCATGTTTTCTACACAGGATCCGGCAACAGGGTCATTACAATATTCTGGTCCA
CCTATCAATGCAAAAGGTAGTGACACATATATTGCTTGGTCCTTGATTGGAACACATAATGTCTGGTTGTACACC
GGAGACATTGACTTCGTCCATGACGTCTGGAGTAATTTTACGAAGGCGCTTGCATTCCTGGAAAGTCAAGTTGAT
GAAACTGGATTGATGGATGTCCCACAAGCGTTTTCCAATGACTGGGGGAGAGACGGAGGACAAGGACATAATATT
GCGGCAAACGTTTTGCTTTATAGGTCTCTCGTAACAGGTTCGGAGTTAGCCCGCCAAATAGGAGATGCCCGTTTG
TCGAAAGCATATGCGGCAAATGCAACGACATTGAAAAGAGATATTAATGATCTGCTTTGGGACAGCACGGCTGAG
ATGTTTCGTGACAACGACTCGTCGGATCTCCTTCCACAAGATGGAAATGCTATGGCAGTCCTGTTTAACGTTACA
CAAAACCAAGAGCAGGTAAAGGCAATTAGCAAAGGCTTGACTCAATTCTGGACAGATATCGGTCCACTGAGTCCC
GAGCTCAATGATACGATTATCCCGTTCGTTGGGGGTTTCGAGGTACAAGCGCATTTTATTGCAGGTGAAGGTGAA
AGGGCTCTTGATTTACTACACCAAGGTAAATCCTAA
Gene >AgabiH97|046280
ATGCTCACGTCTTTCATAGCAGTTGTACTCATTGCGGCCGACGCATTTGGTTTAGCTCCTCATGGACCATGGGAT
CAATTCAACTTCGCACCTGAGAATAGGATCAGCCGTCCAACTCAAATCCATTCTATTCAGGGCAATGTACAGAAT
GCAGATGCTCTGATCAGTTCAGGAACAGCAAATTTCAATGGAAACAGCAGTTTCGTTACCTTGGATTTCGGCCTA
GAGGTAAGTGTAGTACAAAAAAAAAAAAAGAAGCTTGGATGCCTAACGGAAATTGAATTAGGTTGGCGGCCGTGT
TTTCTTTGACGTCGTCCATTCAACCGGGGACGCTCGCCTTTCTCTTTCCTTTACAGAATCGGCTGAATTCATCAG
TCCTCTCAACTCAGATGATTCGTGTCATTCCGTCTTTACAATGGACGGCGATGGTGTCCAATCTCTCCCGGTGCC
CCTTAGCACAGGGAAATTTATGCAGACTATAAGCCAACAGCGTGGCGGGTTCCGTTTCATGACCATCGTAAGCCA
CTCCGATGGCCAGATTGGCATCGCTGGAGTAGGCGTCGAAAATACATTCATGCCACATTGGGACGACTTGCGAGC
GTATACTGGGTACTTCTTCACTAAAGATCCCAATTTCCATGATCCGGATTTTCTAACCAAATTGTGGTACGCTGG
AGCATATACAGTCCAGACCAACACCATCGATGCGAACCAAGCTCGGCAGCAGCCTTGTCCAAGCCCGAAGGGTAG
TTATCGGTTTGAAAGATTATAGATACCATTGCTGAAACTTTTTTGCAAAGGGTGGGACAACAACGCAAGCGGTGG
ACCAGTTGAAGGACCAATTCTGGTGGATGGTGCAAAGCGTGATCGGTAAGAATTTTCGAGTGTTCGTATGTCTTT
GGATACTGATGGTCTTATCGAACAGAAATATATGGCCTGGTTCGTCAAATCAGACCTACGCCAAATCAGATCTTT
AACATGGTTCTCCAGGTGATATGGGCATATCCAGCCACACGGAGCTTGTGGCTCTGAATGACATCCTTCCAAGCA
AGAACGCGCTTCTCGTCATGTTTTCTACACAGGATCCGGCAACAGGGTCATTACAATATTCTGGTCCACCTATCA
ATGCAAAAGGTAGTGACACATATATTGCTTGGTCCTTGATTGGAACACATAATGTCTGGTTGTACACCGGAGACA
TTGACTTCGTCCATGACGTCTGGAGTAATTTTACGAAGGCGCTTGCATTCCTGGAAAGTCAAGTTGATGAAACTG
GATTGATGGATGTCCCACAAGCGTTTTCCAATGACTGGGGGAGAGACGGAGGACAAGGACATAATATTGCGGCAA
ACGTTTTGCTTTATAGGGTATGCACCGTCTTCACTAAGTTCTGTTTCCCATCTGTGTCTGACAACTCGAGGCAGT
CTCTCGTAACAGGTTCGGAGTTAGCCCGCCAAATAGGAGATGCCCGTTTGTCGAAAGCATATGCGGCAAATGCAA
CGACATTGAAAAGAGATATTAATGATCTGCTTTGGGACAGCACGGCTGAGATGTTTCGTGACAACGACTCGTCGG
ATCTCCTTCCACAAGATGGAAATGCTATGGCAGTCCTGTTTAACGTTACACAAAACCAAGAGCAGGTAAAGGCAA
TTAGCAAAGGCTTGACTCAATTCTGGACAGATATCGGTCCACTGAGTCCCGAGCTCAATGATACGATTATCCCGT
TCGTTGGGGGTTTCGAGGTGAGGATTGACTCCCTAGTTGGTGAAAATTAACGCGGTTCCTCTTCAGGTACAAGCG
CATTTTATTGCAGGTGAAGGTGAAAGGGCTCTTGATTTACTACACCAAGGTAAATCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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