Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|046080
Gene name
Locationscaffold_2:1865564..1867464
Strand+
Gene length (bp)1900
Transcript length (bp)1455
Coding sequence length (bp)1455
Protein length (aa) 485

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00288 GHMP_kinases_N GHMP kinases N terminal domain 4.9E-14 141 221
PF08544 GHMP_kinases_C GHMP kinases C terminal 4.4E-08 372 433

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9UT88|ERG8_SCHPO Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1 3 459 1.0E-62
sp|P24521|ERG8_YEAST Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG8 PE=1 SV=2 8 430 2.0E-51

GO

GO Term Description Terminal node
GO:0005524 ATP binding Yes
GO:0035639 purine ribonucleoside triphosphate binding No
GO:1901265 nucleoside phosphate binding No
GO:0097367 carbohydrate derivative binding No
GO:0036094 small molecule binding No
GO:0032553 ribonucleotide binding No
GO:0032559 adenyl ribonucleotide binding No
GO:0030554 adenyl nucleotide binding No
GO:0043168 anion binding No
GO:0017076 purine nucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No
GO:0000166 nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 250.91 132.72 369.10
Initials Initials knots 352.29 186.26 518.31
Pileal_Stipeal_center Stage I stipe center 1836.13 492.20 3180.06
Pileal_Stipeal_shell Stage I stipe shell 721.06 328.73 1113.39
DIF_stipe_center Stage II stipe center 4463.54 0.00 8938.46
DIF_stipe_shell Stage II stipe shell 2994.97 43.00 5946.94
DIF_stipe_skin Stage II stipe skin 2044.20 557.78 3530.62
DIF_cap_skin Stage II cap skin 516.69 260.78 772.59
DIF_cap_tissue Stage II cap tissue 775.00 310.31 1239.68
DIF_gill_tissue Stage II gill tissue 958.38 362.26 1554.50
YFB_stipe_center Young fruiting body stipe center 5967.64 0.00 12446.50
YFB_stipe_shell Young fruiting body stipe shell 7151.17 0.00 17015.90
YFB_stipe_skin Young fruiting body stipe skin 5618.73 0.00 11640.00
YFB_cap_skin Young fruiting body cap skin 441.07 224.36 657.79
YFB_cap_tissue Young fruiting body cap tissue 573.26 240.20 906.32
YFB_gill_tissue Young fruiting body gill tissue 1193.81 455.81 1931.82
YFB_veil Young fruiting body veil 1265.67 369.78 2161.56

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.096131 no
Casing YFB_cap_tissue 0.014668 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.389694 no
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.000613 yes
Casing DIF_cap_skin 0.023676 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.004548 yes
DIF_gill_tissue YFB_stipe_shell 0.030372 yes
DIF_gill_tissue YFB_stipe_skin 0.006032 yes
DIF_gill_tissue YFB_cap_skin 0.045911 yes
DIF_gill_tissue YFB_cap_tissue 0.245434 no
DIF_gill_tissue YFB_gill_tissue 0.737599 no
DIF_gill_tissue YFB_veil 0.655821 no
YFB_stipe_center YFB_stipe_shell 0.908612 no
YFB_stipe_center YFB_stipe_skin 0.966069 no
YFB_stipe_center YFB_cap_skin 0.000613 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.011968 yes
YFB_stipe_center YFB_veil 0.013485 yes
YFB_stipe_shell YFB_stipe_skin 0.871542 no
YFB_stipe_shell YFB_cap_skin 0.002525 yes
YFB_stipe_shell YFB_cap_tissue 0.006032 yes
YFB_stipe_shell YFB_gill_tissue 0.052135 no
YFB_stipe_shell YFB_veil 0.058926 no
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.021322 yes
YFB_stipe_skin YFB_veil 0.026461 yes
YFB_cap_skin YFB_cap_tissue 0.581973 no
YFB_cap_skin YFB_gill_tissue 0.007092 yes
YFB_cap_skin YFB_veil 0.008121 yes
YFB_cap_tissue YFB_gill_tissue 0.062420 no
YFB_cap_tissue YFB_veil 0.055182 no
YFB_gill_tissue YFB_veil 0.944974 no
Initials DIF_gill_tissue 0.007782 yes
Initials YFB_stipe_center 0.000613 yes
Initials YFB_stipe_shell 0.001140 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.626833 no
Initials YFB_cap_tissue 0.198538 no
Initials YFB_gill_tissue 0.001140 yes
Initials YFB_veil 0.001140 yes
Initials Pileal_Stipeal_center 0.000613 yes
Initials Pileal_Stipeal_shell 0.035993 yes
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.001140 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.301454 no
Initials DIF_cap_tissue 0.027943 yes
Pileal_Stipeal_center DIF_gill_tissue 0.193249 no
Pileal_Stipeal_center YFB_stipe_center 0.070137 no
Pileal_Stipeal_center YFB_stipe_shell 0.134864 no
Pileal_Stipeal_center YFB_stipe_skin 0.088950 no
Pileal_Stipeal_center YFB_cap_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_tissue 0.008457 yes
Pileal_Stipeal_center YFB_gill_tissue 0.457696 no
Pileal_Stipeal_center YFB_veil 0.552969 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.033906 yes
Pileal_Stipeal_center DIF_stipe_center 0.133289 no
Pileal_Stipeal_center DIF_stipe_shell 0.521395 no
Pileal_Stipeal_center DIF_stipe_skin 0.907684 no
Pileal_Stipeal_center DIF_cap_skin 0.002951 yes
Pileal_Stipeal_center DIF_cap_tissue 0.054982 no
Pileal_Stipeal_shell DIF_gill_tissue 0.605284 no
Pileal_Stipeal_shell YFB_stipe_center 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.016104 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.001625 yes
Pileal_Stipeal_shell YFB_cap_skin 0.203039 no
Pileal_Stipeal_shell YFB_cap_tissue 0.675667 no
Pileal_Stipeal_shell YFB_gill_tissue 0.260285 no
Pileal_Stipeal_shell YFB_veil 0.214014 no
Pileal_Stipeal_shell DIF_stipe_center 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_shell 0.021583 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.019715 yes
Pileal_Stipeal_shell DIF_cap_skin 0.445853 no
Pileal_Stipeal_shell DIF_cap_tissue 0.922099 no
DIF_stipe_center DIF_gill_tissue 0.004160 yes
DIF_stipe_center YFB_stipe_center 0.783132 no
DIF_stipe_center YFB_stipe_shell 0.677135 no
DIF_stipe_center YFB_stipe_skin 0.839569 no
DIF_stipe_center YFB_cap_skin 0.000613 yes
DIF_stipe_center YFB_cap_tissue 0.000613 yes
DIF_stipe_center YFB_gill_tissue 0.014668 yes
DIF_stipe_center YFB_veil 0.019169 yes
DIF_stipe_center DIF_stipe_shell 0.671723 no
DIF_stipe_center DIF_stipe_skin 0.201152 no
DIF_stipe_center DIF_cap_skin 0.000613 yes
DIF_stipe_center DIF_cap_tissue 0.001625 yes
DIF_stipe_shell DIF_gill_tissue 0.063183 no
DIF_stipe_shell YFB_stipe_center 0.424353 no
DIF_stipe_shell YFB_stipe_shell 0.394341 no
DIF_stipe_shell YFB_stipe_skin 0.486949 no
DIF_stipe_shell YFB_cap_skin 0.002525 yes
DIF_stipe_shell YFB_cap_tissue 0.010412 yes
DIF_stipe_shell YFB_gill_tissue 0.144709 no
DIF_stipe_shell YFB_veil 0.178830 no
DIF_stipe_shell DIF_stipe_skin 0.642259 no
DIF_stipe_shell DIF_cap_skin 0.004928 yes
DIF_stipe_shell DIF_cap_tissue 0.029648 yes
DIF_stipe_skin DIF_gill_tissue 0.115346 no
DIF_stipe_skin YFB_stipe_center 0.105067 no
DIF_stipe_skin YFB_stipe_shell 0.167754 no
DIF_stipe_skin YFB_stipe_skin 0.131549 no
DIF_stipe_skin YFB_cap_skin 0.000613 yes
DIF_stipe_skin YFB_cap_tissue 0.003365 yes
DIF_stipe_skin YFB_gill_tissue 0.307289 no
DIF_stipe_skin YFB_veil 0.404663 no
DIF_stipe_skin DIF_cap_skin 0.001625 yes
DIF_stipe_skin DIF_cap_tissue 0.031323 yes
DIF_cap_skin DIF_gill_tissue 0.123805 no
DIF_cap_skin YFB_stipe_center 0.000613 yes
DIF_cap_skin YFB_stipe_shell 0.005671 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.766027 no
DIF_cap_skin YFB_cap_tissue 0.866443 no
DIF_cap_skin YFB_gill_tissue 0.025711 yes
DIF_cap_skin YFB_veil 0.025963 yes
DIF_cap_skin DIF_cap_tissue 0.335141 no
DIF_cap_tissue DIF_gill_tissue 0.733736 no
DIF_cap_tissue YFB_stipe_center 0.001140 yes
DIF_cap_tissue YFB_stipe_shell 0.017507 yes
DIF_cap_tissue YFB_stipe_skin 0.001625 yes
DIF_cap_tissue YFB_cap_skin 0.140276 no
DIF_cap_tissue YFB_cap_tissue 0.551286 no
DIF_cap_tissue YFB_gill_tissue 0.376539 no
DIF_cap_tissue YFB_veil 0.310199 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|046080
MPLSTVVSSPGKVLLTGGYLVLDPAYSGTVISASSRFYTIVQDDTTVGSGNIRVRSPQFNDATWNFVVDIDSESI
LDPGSNNATKNKFVQLALEKTIRLAVELKEKTIIQERATLASLSISRTLESLKMIKPFNKSGITLSDVHKTGLGS
SAALITSLVSALLVHFSVLPKSAFSEDAENNHDAKMDVLGKALAHNLAQYVHCLAQGKVGSGFDVSAAVFGTHLY
TRFDPAVLQLLMDDSTHQTLEPVISPSNPSWNHSIKPFKLPPLTRLMLADVDAGSDTPSLVGKVLKWRKENSVES
DTLWREIDQLNQSFAQTLLHISTLHDQDTVNYGTALKYISSLQPVQWAANPWQPEEEIPIVEAFYEAHRISQDIR
EKMRKMGVLAGVPIEPPEQTKLLNACVTQAGVIGGGVPGAGGYDAIWLLVCDPIDCSPDQRPTERVEYVWSNYKD
LDVSPLSTSESTISGSRLEQLEGVPGLKEAVSIE*
Coding >AgabiH97|046080
ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC
TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT
AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT
CTCGACCCTGGATCCAACAACGCCACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCT
GTTGAGCTGAAGGAAAAAACCATCATTCAAGAGCGCGCGACACTTGCGTCGCTAAGCATCTCAAGGACGCTCGAG
TCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCGGCTTGGGGTCT
TCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAATCGGCTTTTTCG
GAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATCTTGCTCAATAC
GTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGACACATCTTTAC
ACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGCATCAAACGCTTGAGCCGGTTATATCT
CCGTCCAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGAT
GTAGACGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTCC
GACACATTATGGAGAGAGATTGACCAATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCAT
GACCAAGATACAGTTAACTATGGTACAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAATGGGCTGCAAAC
CCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTATGAAGCCCACCGCATATCACAGGATATACGA
GAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGCTTCTCAATGCA
TGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGCTGGAGGCTATGATGCAATCTGGCTACTAGTC
TGTGATCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGAT
TTGGACGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCG
GGACTGAAAGAAGCGGTCTCAATCGAGTGA
Transcript >AgabiH97|046080
ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC
TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT
AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT
CTCGACCCTGGATCCAACAACGCCACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCT
GTTGAGCTGAAGGAAAAAACCATCATTCAAGAGCGCGCGACACTTGCGTCGCTAAGCATCTCAAGGACGCTCGAG
TCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCGGCTTGGGGTCT
TCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAATCGGCTTTTTCG
GAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATCTTGCTCAATAC
GTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGACACATCTTTAC
ACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGCATCAAACGCTTGAGCCGGTTATATCT
CCGTCCAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGAT
GTAGACGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTCC
GACACATTATGGAGAGAGATTGACCAATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCAT
GACCAAGATACAGTTAACTATGGTACAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAATGGGCTGCAAAC
CCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTATGAAGCCCACCGCATATCACAGGATATACGA
GAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGCTTCTCAATGCA
TGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGCTGGAGGCTATGATGCAATCTGGCTACTAGTC
TGTGATCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGAT
TTGGACGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCG
GGACTGAAAGAAGCGGTCTCAATCGAGTGA
Gene >AgabiH97|046080
ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC
TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT
AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT
CTCGACCCTGGATCCAACAAGTGCGTAACGTTATGATAGATCCGTGGGATGCATCTGGAAGGTTTCTGCAGCGCC
ACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCTGTTGAGCTGAAGGAAAAAACCATC
ATTCAAGAGGTGCTCTCACATGGAATCGATATTGCTATCGTCGGGGACAATGATTTCTATTCCCAGCGCGCGACA
GTAAACAATTCATTCACCATTGTTACATTGCCATCTTTCTGATCGGGGCCTAGCTTGCGTCGCTAAGCATCTCAA
GGACGCTCGAGTCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCG
GCTTGGGGTCTTCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAAT
CGGCTTTTTCGGAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATC
TTGCTCAATACGTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGA
CACATCTTTACACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGGTGTGTTTCATCTAAT
TATGAAATGAGATGTTTTTACAATTCTCGATCCGCTTTACCAGCATCAAACGCTTGAGCCGGTTATATCTCCGTC
CAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGATGTAGA
CGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTGTGAGGC
TTTGGTAGTCACTTTCTTTCTCGAATCTGCACTGACAGTGTTTGCTAGCCGACACATTATGGAGAGAGATTGACC
AATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCATGACCAAGATACAGTTAACTATGGTA
CAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAAGTGAGTATCTTTTGAGTTCATCCTGGATTACCTCTGA
TAAGATTTTACGTGCACAGTGGGCTGCAAACCCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTA
TGAAGCCCACCGCATATCACAGGCATGCTCATAATTTCCTCTTATCTCTTCAAGCCCCAATTAAGATTGTTGCTC
AGGATATACGAGAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGC
TTCTCAATGCATGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGGTGTGCCCTTTTATTATTATC
ACTACCTTCCCAGATTCCTAAATGGTCACCATTATCAGCTGGAGGCTATGATGCAATCTGGCTACTAGTCTGTGA
TCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGATTTGGA
CGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCGGGACT
GAAAGAAGCGGTCTCAATCGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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