© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|046080 |
| Gene name | |
| Location | scaffold_2:1865564..1867464 |
| Strand | + |
| Gene length (bp) | 1900 |
| Transcript length (bp) | 1455 |
| Coding sequence length (bp) | 1455 |
| Protein length (aa) | 485 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00288 | GHMP_kinases_N | GHMP kinases N terminal domain | 4.9E-14 | 141 | 221 |
| PF08544 | GHMP_kinases_C | GHMP kinases C terminal | 4.4E-08 | 372 | 433 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT88|ERG8_SCHPO | Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1 | 3 | 459 | 1.0E-62 |
| sp|P24521|ERG8_YEAST | Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG8 PE=1 SV=2 | 8 | 430 | 2.0E-51 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|046080 MPLSTVVSSPGKVLLTGGYLVLDPAYSGTVISASSRFYTIVQDDTTVGSGNIRVRSPQFNDATWNFVVDIDSESI LDPGSNNATKNKFVQLALEKTIRLAVELKEKTIIQERATLASLSISRTLESLKMIKPFNKSGITLSDVHKTGLGS SAALITSLVSALLVHFSVLPKSAFSEDAENNHDAKMDVLGKALAHNLAQYVHCLAQGKVGSGFDVSAAVFGTHLY TRFDPAVLQLLMDDSTHQTLEPVISPSNPSWNHSIKPFKLPPLTRLMLADVDAGSDTPSLVGKVLKWRKENSVES DTLWREIDQLNQSFAQTLLHISTLHDQDTVNYGTALKYISSLQPVQWAANPWQPEEEIPIVEAFYEAHRISQDIR EKMRKMGVLAGVPIEPPEQTKLLNACVTQAGVIGGGVPGAGGYDAIWLLVCDPIDCSPDQRPTERVEYVWSNYKD LDVSPLSTSESTISGSRLEQLEGVPGLKEAVSIE* |
| Coding | >AgabiH97|046080 ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT CTCGACCCTGGATCCAACAACGCCACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCT GTTGAGCTGAAGGAAAAAACCATCATTCAAGAGCGCGCGACACTTGCGTCGCTAAGCATCTCAAGGACGCTCGAG TCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCGGCTTGGGGTCT TCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAATCGGCTTTTTCG GAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATCTTGCTCAATAC GTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGACACATCTTTAC ACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGCATCAAACGCTTGAGCCGGTTATATCT CCGTCCAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGAT GTAGACGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTCC GACACATTATGGAGAGAGATTGACCAATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCAT GACCAAGATACAGTTAACTATGGTACAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAATGGGCTGCAAAC CCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTATGAAGCCCACCGCATATCACAGGATATACGA GAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGCTTCTCAATGCA TGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGCTGGAGGCTATGATGCAATCTGGCTACTAGTC TGTGATCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGAT TTGGACGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCG GGACTGAAAGAAGCGGTCTCAATCGAGTGA |
| Transcript | >AgabiH97|046080 ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT CTCGACCCTGGATCCAACAACGCCACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCT GTTGAGCTGAAGGAAAAAACCATCATTCAAGAGCGCGCGACACTTGCGTCGCTAAGCATCTCAAGGACGCTCGAG TCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCGGCTTGGGGTCT TCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAATCGGCTTTTTCG GAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATCTTGCTCAATAC GTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGACACATCTTTAC ACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGCATCAAACGCTTGAGCCGGTTATATCT CCGTCCAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGAT GTAGACGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTCC GACACATTATGGAGAGAGATTGACCAATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCAT GACCAAGATACAGTTAACTATGGTACAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAATGGGCTGCAAAC CCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTATGAAGCCCACCGCATATCACAGGATATACGA GAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGCTTCTCAATGCA TGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGCTGGAGGCTATGATGCAATCTGGCTACTAGTC TGTGATCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGAT TTGGACGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCG GGACTGAAAGAAGCGGTCTCAATCGAGTGA |
| Gene | >AgabiH97|046080 ATGCCTCTTTCAACCGTTGTCTCTTCCCCAGGCAAGGTCCTCCTCACAGGAGGTTACCTCGTGCTTGACCCAGCC TACTCTGGCACTGTCATTTCTGCCTCTTCTCGCTTTTATACTATAGTGCAAGATGATACCACAGTCGGCTCAGGT AACATCCGCGTTCGTTCACCTCAATTCAATGATGCAACCTGGAATTTTGTGGTCGACATCGACTCCGAGAGTATT CTCGACCCTGGATCCAACAAGTGCGTAACGTTATGATAGATCCGTGGGATGCATCTGGAAGGTTTCTGCAGCGCC ACAAAAAACAAATTCGTACAACTTGCATTGGAGAAGACGATCAGGTTAGCTGTTGAGCTGAAGGAAAAAACCATC ATTCAAGAGGTGCTCTCACATGGAATCGATATTGCTATCGTCGGGGACAATGATTTCTATTCCCAGCGCGCGACA GTAAACAATTCATTCACCATTGTTACATTGCCATCTTTCTGATCGGGGCCTAGCTTGCGTCGCTAAGCATCTCAA GGACGCTCGAGTCTCTGAAAATGATAAAACCCTTCAACAAGTCGGGCATCACACTATCGGATGTACATAAAACCG GCTTGGGGTCTTCTGCAGCGCTCATAACATCACTTGTTTCCGCGCTTCTTGTTCATTTTTCTGTTCTTCCGAAAT CGGCTTTTTCGGAAGACGCAGAGAACAATCATGATGCGAAGATGGACGTGTTGGGAAAAGCTCTCGCTCACAATC TTGCTCAATACGTGCACTGTCTGGCTCAAGGAAAAGTTGGAAGTGGATTCGACGTCTCGGCCGCGGTGTTTGGGA CACATCTTTACACGAGGTTCGACCCGGCAGTTCTTCAACTGCTTATGGATGATTCGACGGTGTGTTTCATCTAAT TATGAAATGAGATGTTTTTACAATTCTCGATCCGCTTTACCAGCATCAAACGCTTGAGCCGGTTATATCTCCGTC CAACCCGTCATGGAATCACAGCATCAAGCCGTTTAAGCTTCCGCCGTTGACCCGATTAATGCTGGCAGATGTAGA CGCTGGGAGCGATACACCATCACTCGTAGGTAAGGTTCTCAAATGGAGAAAAGAGAACAGCGTTGAGTGTGAGGC TTTGGTAGTCACTTTCTTTCTCGAATCTGCACTGACAGTGTTTGCTAGCCGACACATTATGGAGAGAGATTGACC AATTGAACCAGTCTTTTGCGCAAACCCTGCTTCATATCTCGACGCTTCATGACCAAGATACAGTTAACTATGGTA CAGCCTTGAAATATATCTCTTCACTCCAGCCTGTTCAAGTGAGTATCTTTTGAGTTCATCCTGGATTACCTCTGA TAAGATTTTACGTGCACAGTGGGCTGCAAACCCATGGCAACCGGAAGAAGAAATACCTATCGTTGAAGCCTTCTA TGAAGCCCACCGCATATCACAGGCATGCTCATAATTTCCTCTTATCTCTTCAAGCCCCAATTAAGATTGTTGCTC AGGATATACGAGAGAAAATGCGAAAGATGGGTGTCCTTGCCGGTGTTCCGATAGAGCCACCTGAGCAGACGAAGC TTCTCAATGCATGTGTAACTCAAGCTGGTGTAATCGGAGGTGGTGTGCCAGGAGGTGTGCCCTTTTATTATTATC ACTACCTTCCCAGATTCCTAAATGGTCACCATTATCAGCTGGAGGCTATGATGCAATCTGGCTACTAGTCTGTGA TCCCATCGATTGTTCTCCAGATCAACGTCCGACAGAGCGGGTTGAATACGTATGGAGTAACTACAAAGATTTGGA CGTATCTCCTCTCTCGACCTCGGAGAGTACGATCAGCGGCAGCCGGCTGGAACAACTCGAAGGGGTACCGGGACT GAAAGAAGCGGTCTCAATCGAGTGA |