Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|046060
Gene name
Location	scaffold_2:1861600..1863586
Strand	+
Gene length (bp)	1986
Transcript length (bp)	1728
Coding sequence length (bp)	1728
Protein length (aa)	576

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13639	zf-RING_2	Ring finger domain	4.8E-08	529	562
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	4.5E-07	531	561
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	8.1E-05	530	561
PF13445	zf-RING_UBOX	RING-type zinc-finger	2.2E-03	531	550

Swissprot hits

(None)

GO

GO Term	Description	Terminal node
GO:0046872	metal ion binding	Yes
GO:0003674	molecular_function	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0043169	cation binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 62	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	92	114	22
2	140	162	22
3	217	239	22
4	249	266	17
5	268	290	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|046060 MSTSPSNVLDDESLHSVRSMGDVAQSPLPPSSLLRISNDHPASTSTIPPISSAPVGPRNQMDNQDPQHNWLDSLL AFFGLGKFGLQSRRSTVALSWNFTWSSAQIVVIITLLVLSGTVFKNPNSAAPHVRTEWESCDRPLGVWACLWIGR VILSSVLAYWNYVRQLRAIASYIQGNPVMVRRGNRQSTIPRADSRQLRPIRQQGIIVPPPNTSYTRLSVLSSLLT LSWFLTAHILAYTSFNTCRRTSPHVWWLVFGILCIMYLTVFEVVVIGFIVLVITPIVFVLWNILLICLGRHPIQN AHIIKPEIDKLPKTLVEKIPLVMYIPPPPEGSDLKSTSQKIITSPHNYPPKAPSKPLSKPRFKFLKPRASKKKHS CPVSAPRLPADVEKTAANGEALAWSDYWEENEYPFVILEGNRAACAICLLDFEEPKRKSGLEHAFTKSSDKEAVE EPVVESLDYDTKKSDEAEEPVGDLEGREAIKWSQQKSPSTNPTEPRIHSASQVVVRTSSPGIALEDRETNQQLED AGEEAQPLRLLNCGHVFHKTCLDPWLIDVSGRCPICQRAVEIPGQKSGRS*
Coding	>AgabiH97\|046060 ATGTCTACGAGTCCCTCAAATGTCCTAGACGACGAGAGCTTACACAGTGTTAGATCTATGGGTGATGTAGCACAA TCTCCCCTTCCGCCCAGTAGCTTGCTACGGATATCCAACGACCATCCCGCCAGCACCAGCACCATCCCCCCAATC TCGTCTGCCCCTGTTGGCCCTCGTAATCAAATGGATAATCAGGACCCACAGCATAATTGGCTAGACTCATTGCTG GCGTTCTTTGGGTTGGGCAAGTTCGGATTACAGAGCAGGAGGTCAACAGTTGCGCTATCATGGAATTTTACATGG TCATCTGCTCAAATTGTCGTGATAATAACGTTGCTCGTGCTCTCTGGAACCGTGTTCAAGAATCCGAATTCTGCG GCGCCACATGTGAGAACTGAATGGGAATCCTGCGATAGACCGCTGGGCGTATGGGCGTGCCTGTGGATCGGGAGA GTGATATTATCATCCGTATTAGCGTACTGGAACTACGTGAGGCAGCTCAGAGCGATTGCTAGCTACATTCAAGGA AATCCCGTTATGGTTAGGAGGGGCAATAGGCAATCCACAATACCTCGTGCTGACAGTAGGCAGCTTCGTCCAATT CGACAACAAGGCATTATCGTTCCGCCACCAAATACATCGTATACTCGGCTTTCAGTTCTTTCGTCGTTACTCACC CTGAGCTGGTTCCTTACTGCCCATATTCTGGCATACACTTCATTTAACACCTGTAGGCGGACCTCGCCTCATGTA TGGTGGCTCGTATTTGGAATCCTCTGCATCATGTACCTGACGGTCTTCGAAGTGGTGGTAATAGGCTTCATTGTC TTGGTCATTACACCAATTGTTTTTGTCCTTTGGAATATTTTACTCATCTGCCTTGGTCGTCATCCGATCCAGAAT GCTCATATAATTAAGCCGGAGATCGACAAATTGCCCAAGACTCTCGTCGAAAAGATTCCTTTAGTAATGTATATC CCACCACCTCCAGAAGGCTCAGACCTCAAATCTACTTCTCAAAAAATAATCACTTCTCCCCATAATTACCCTCCC AAAGCACCATCGAAGCCGCTTAGCAAACCTAGATTCAAATTCCTGAAGCCCAGGGCTTCAAAGAAGAAACACTCT TGTCCAGTCAGCGCTCCTCGTTTGCCTGCTGACGTAGAAAAAACCGCAGCGAATGGAGAGGCACTGGCATGGAGT GACTATTGGGAAGAAAATGAATATCCCTTTGTCATTCTCGAAGGTAACAGGGCTGCCTGCGCAATCTGTTTGTTG GATTTTGAGGAGCCAAAGAGAAAATCTGGATTAGAGCATGCTTTTACGAAGTCATCAGACAAAGAGGCAGTCGAA GAACCCGTCGTTGAATCGCTTGATTACGACACGAAGAAAAGCGATGAAGCCGAAGAGCCAGTGGGAGATTTAGAA GGAAGAGAGGCAATCAAATGGTCCCAGCAGAAATCACCAAGTACTAATCCAACGGAGCCACGAATACACAGTGCT TCTCAAGTGGTAGTTCGAACTTCAAGCCCTGGTATTGCCTTGGAAGATAGGGAAACAAACCAACAACTCGAAGAT GCCGGAGAAGAGGCGCAGCCGCTGAGACTGTTGAATTGCGGACATGTTTTTCATAAAACATGCCTTGACCCCTGG CTGATTGACGTGTCTGGGAGATGTCCCATCTGTCAACGCGCAGTAGAAATACCAGGCCAGAAATCCGGGAGGTCC TGA
Transcript	>AgabiH97\|046060 ATGTCTACGAGTCCCTCAAATGTCCTAGACGACGAGAGCTTACACAGTGTTAGATCTATGGGTGATGTAGCACAA TCTCCCCTTCCGCCCAGTAGCTTGCTACGGATATCCAACGACCATCCCGCCAGCACCAGCACCATCCCCCCAATC TCGTCTGCCCCTGTTGGCCCTCGTAATCAAATGGATAATCAGGACCCACAGCATAATTGGCTAGACTCATTGCTG GCGTTCTTTGGGTTGGGCAAGTTCGGATTACAGAGCAGGAGGTCAACAGTTGCGCTATCATGGAATTTTACATGG TCATCTGCTCAAATTGTCGTGATAATAACGTTGCTCGTGCTCTCTGGAACCGTGTTCAAGAATCCGAATTCTGCG GCGCCACATGTGAGAACTGAATGGGAATCCTGCGATAGACCGCTGGGCGTATGGGCGTGCCTGTGGATCGGGAGA GTGATATTATCATCCGTATTAGCGTACTGGAACTACGTGAGGCAGCTCAGAGCGATTGCTAGCTACATTCAAGGA AATCCCGTTATGGTTAGGAGGGGCAATAGGCAATCCACAATACCTCGTGCTGACAGTAGGCAGCTTCGTCCAATT CGACAACAAGGCATTATCGTTCCGCCACCAAATACATCGTATACTCGGCTTTCAGTTCTTTCGTCGTTACTCACC CTGAGCTGGTTCCTTACTGCCCATATTCTGGCATACACTTCATTTAACACCTGTAGGCGGACCTCGCCTCATGTA TGGTGGCTCGTATTTGGAATCCTCTGCATCATGTACCTGACGGTCTTCGAAGTGGTGGTAATAGGCTTCATTGTC TTGGTCATTACACCAATTGTTTTTGTCCTTTGGAATATTTTACTCATCTGCCTTGGTCGTCATCCGATCCAGAAT GCTCATATAATTAAGCCGGAGATCGACAAATTGCCCAAGACTCTCGTCGAAAAGATTCCTTTAGTAATGTATATC CCACCACCTCCAGAAGGCTCAGACCTCAAATCTACTTCTCAAAAAATAATCACTTCTCCCCATAATTACCCTCCC AAAGCACCATCGAAGCCGCTTAGCAAACCTAGATTCAAATTCCTGAAGCCCAGGGCTTCAAAGAAGAAACACTCT TGTCCAGTCAGCGCTCCTCGTTTGCCTGCTGACGTAGAAAAAACCGCAGCGAATGGAGAGGCACTGGCATGGAGT GACTATTGGGAAGAAAATGAATATCCCTTTGTCATTCTCGAAGGTAACAGGGCTGCCTGCGCAATCTGTTTGTTG GATTTTGAGGAGCCAAAGAGAAAATCTGGATTAGAGCATGCTTTTACGAAGTCATCAGACAAAGAGGCAGTCGAA GAACCCGTCGTTGAATCGCTTGATTACGACACGAAGAAAAGCGATGAAGCCGAAGAGCCAGTGGGAGATTTAGAA GGAAGAGAGGCAATCAAATGGTCCCAGCAGAAATCACCAAGTACTAATCCAACGGAGCCACGAATACACAGTGCT TCTCAAGTGGTAGTTCGAACTTCAAGCCCTGGTATTGCCTTGGAAGATAGGGAAACAAACCAACAACTCGAAGAT GCCGGAGAAGAGGCGCAGCCGCTGAGACTGTTGAATTGCGGACATGTTTTTCATAAAACATGCCTTGACCCCTGG CTGATTGACGTGTCTGGGAGATGTCCCATCTGTCAACGCGCAGTAGAAATACCAGGCCAGAAATCCGGGAGGTCC TGA
Gene	>AgabiH97\|046060 ATGTCTACGAGTCCCTCAAATGTCCTAGACGACGAGAGCTTACACAGTGTTAGATCTATGGGTGATGTAGCACAA TCTCCCCTTCCGCCCAGTAGCTTGCTACGGATATCCAACGACCATCCCGCCAGCACCAGCACCATCCCCCCAATC TCGTCTGCCCCTGTTGGCCCTCGTAATCAAATGGATAATCAGGACCCACAGCATAATTGGCTAGACTCATTGCTG GCGTTCTTTGGGTTGGGCAAGTTCGGATTACAGAGCAGGAGGTCAACAGTTGCGCTATCATGGAATTTTACATGG TCATCTGCTCAAGTACGTATCACTCGGTATTGACCATGATCTTCACTGAACTTACGCAGATTGTCGTGATAATAA CGTTGCTCGTGCTCTCTGGAACCGTGTTCAAGAATCCGAATTCTGCGGCGCCACATGTGAGAACTGAATGGGAAT CCTGCGATAGACCGCTGGGCGTATGGGCGTGCCTGTGGATCGGGAGAGTGATATTATCATCCGTATTAGCGTACT GGAACTACGTGAGGCAGCTCAGAGCGTGAGTTTTCCAGCTGCTGATCTCTACCGAATTACTAACTTGATCGTAAA GGATTGCTAGCTACATTCAAGGAAATCCCGTTATGGTTAGGAGGGGCAATAGGCAATCCACAATACCTCGTGCTG ACAGTAGGCAGCTTCGTCCAATTCGACAACAAGGCATTATCGTTCCGCCACCAAATACATCGTATACTCGGTGCG CAACAGGCTGTACTTCCATGAATTCGAAACTGATTTCCTATCAAGGCTTTCAGTTCTTTCGTCGTTACTCACCCT GAGCTGGTTCCTTACTGCCCATATTCTGGCATACACTTCATTTAACACCTGTAGGCGGACCTCGCCTCATGTATG GTGGCTCGTATTTGGAATCCTCTGCATCATGTACCTGACGGTCTTCGAAGTGGTGGTAATAGGCTTCATTGTCTT GGTCATTACACCAATTGTTTTTGTAGGTGATATCGAAACATCTTGCCTACGATTTTTGACAATCTGTTACAGGTC CTTTGGAATATTTTACTCATCTGCCTTGGTCGTCATCCGATCCAGAATGCTCATATAATTAAGCCGGAGATCGAC AAATTGCCCAAGACTCTCGTCGAAAAGATTCCTTTAGTAATGTATATCCCACCACCTCCAGAAGGCTCAGACCTC AAATCTACTTCTCAAAAAATAATCACTTCTCCCCATAATTACCCTCCCAAAGCACCATCGAAGCCGCTTAGCAAA CCTAGATTCAAATTCCTGAAGCCCAGGGCTTCAAAGAAGAAACACTCTTGTCCAGTCAGCGCTCCTCGTTTGCCT GCTGACGTAGAAAAAACCGCAGCGAATGGAGAGGCACTGGCATGGAGTGACTATTGGGAAGAAAATGAATATCCC TTTGTCATTCTCGAAGGTAACAGGGCTGCCTGCGCAATCTGTTTGTTGGATTTTGAGGAGCCAAAGAGAAAATCT GGATTAGAGCATGCTTTTACGAAGTCATCAGACAAAGAGGCAGTCGAAGAACCCGTCGTTGAATCGCTTGATTAC GACACGAAGAAAAGCGATGAAGCCGAAGAGCCAGTGGGAGATTTAGAAGGAAGAGAGGCAATCAAATGGTCCCAG CAGAAATCACCAAGTACTAATCCAACGGAGCCACGAATACACAGTGCTTCTCAAGTGGTAGTTCGAACTTCAAGC CCTGGTATTGCCTTGGAAGATAGGGAAACAAACCAACAACTCGAAGATGCCGGAGAAGAGGCGCAGCCGCTGAGA CTGTTGAATTGCGGACATGTTTTTCATGTACGTGTTCCTACGTGTCATCGTATCATCTTCTCTTCTGACTCTGCA TTATTTCTCCAGAAAACATGCCTTGACCCCTGGCTGATTGACGTGTCTGGGAGATGTCCCATCTGTCAACGCGCA GTAGAAATACCAGGCCAGAAATCCGGGAGGTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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