© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|045700 |
| Gene name | |
| Location | scaffold_2:1764738..1765484 |
| Strand | - |
| Gene length (bp) | 746 |
| Transcript length (bp) | 591 |
| Coding sequence length (bp) | 591 |
| Protein length (aa) | 197 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 6.3E-22 | 25 | 86 |
| PF01713 | Smr | Smr domain | 8.4E-11 | 94 | 169 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08954|YP199_YEAST | Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 | 21 | 169 | 1.0E-30 |
| sp|Q9UTP4|YLL3_SCHPO | Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1 | 21 | 172 | 2.0E-28 |
| sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 10 | 166 | 1.0E-12 |
| sp|O64843|CID7_ARATH | Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 | 41 | 145 | 2.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|045700 MLHRLFNALLSLFTGQQPDHEDHLTLRARAAEEGDAMARCFQESHQAYASGNRALAKDLSNKGKEHRNRMEDLNR QASDRIFTENNKDRGPHEIDLHGLYVNEAITRTDLALGQARARGETELHLIVGKGLHSKNGVAKLKPAIEDLMRK HQLSAQLDPNNAGVLIVHLGSSHRHGVDADEITRRIEKGDNGCIIM* |
| Coding | >AgabiH97|045700 ATGCTGCACAGACTCTTCAACGCCCTCCTTTCTCTCTTCACCGGCCAGCAGCCCGACCACGAAGACCACCTTACC CTCCGCGCACGCGCAGCTGAGGAGGGAGATGCCATGGCAAGATGCTTCCAGGAGAGCCACCAGGCTTATGCGAGC GGTAACCGCGCCCTCGCTAAGGATCTTTCCAACAAGGGCAAGGAGCACCGAAATCGCATGGAAGACTTGAACAGG CAGGCCAGCGACCGGATCTTTACAGAAAATAACAAAGACAGGGGGCCACATGAGATTGACTTGCACGGGCTCTAT GTCAACGAAGCCATCACCCGCACAGACCTTGCCCTCGGACAAGCCCGTGCACGAGGCGAGACTGAGCTTCACCTG ATTGTTGGCAAAGGTCTCCATTCCAAGAATGGCGTAGCTAAACTCAAGCCAGCGATCGAGGACTTGATGCGCAAG CACCAACTCTCTGCGCAACTTGATCCCAACAACGCGGGCGTTCTCATTGTTCATTTAGGATCTTCACATCGGCAT GGTGTCGATGCTGACGAGATTACTCGCCGCATCGAAAAGGGCGACAATGGCTGTATCATTATGTAG |
| Transcript | >AgabiH97|045700 ATGCTGCACAGACTCTTCAACGCCCTCCTTTCTCTCTTCACCGGCCAGCAGCCCGACCACGAAGACCACCTTACC CTCCGCGCACGCGCAGCTGAGGAGGGAGATGCCATGGCAAGATGCTTCCAGGAGAGCCACCAGGCTTATGCGAGC GGTAACCGCGCCCTCGCTAAGGATCTTTCCAACAAGGGCAAGGAGCACCGAAATCGCATGGAAGACTTGAACAGG CAGGCCAGCGACCGGATCTTTACAGAAAATAACAAAGACAGGGGGCCACATGAGATTGACTTGCACGGGCTCTAT GTCAACGAAGCCATCACCCGCACAGACCTTGCCCTCGGACAAGCCCGTGCACGAGGCGAGACTGAGCTTCACCTG ATTGTTGGCAAAGGTCTCCATTCCAAGAATGGCGTAGCTAAACTCAAGCCAGCGATCGAGGACTTGATGCGCAAG CACCAACTCTCTGCGCAACTTGATCCCAACAACGCGGGCGTTCTCATTGTTCATTTAGGATCTTCACATCGGCAT GGTGTCGATGCTGACGAGATTACTCGCCGCATCGAAAAGGGCGACAATGGCTGTATCATTATGTAG |
| Gene | >AgabiH97|045700 ATGCTGCACAGACTCTTCAACGCCCTCCTTTCTCTCTTCACCGGCCAGCAGCCCGACCACGAAGACCACCTTACC CTCCGCGCACGCGCAGCTGAGGAGGGAGATGCCATGGCAAGATGCTTCCAGGAGAGCCACCAGGCTTATGCGAGC GGTAACCGCGCCCTCGCTAAGGATCTTTCCAACAAGGGCAAGGAGCACCGAAATCGCATGGAAGACTTGAACAGG CAGGCCAGCGACCGGATCTTTACAGGTAAATTCGACAGCTTTTTATCGTCCTTCACCTTACCAACTCGGCCTATG TAGAAAATAACAAAGTCTGTGGTTGTTCACTTGCCCTTATCCCCTTTTACCTGAAGCCGTTGCCAGGACAGGGGG CCACATGAGATTGACTTGCACGGGCTCTATGTCAACGAAGCCATCACCCGCACAGACCTTGCCCTCGGACAAGCC CGTGCACGAGGCGAGACTGAGCTTCACCTGATTGTTGGCAAAGGTCTCCATTCCAAGAATGGCGTAGCTAAACTC AAGCCAGCGATCGAGGACTTGATGCGCAAGTAAGATGACCCATCTTTCTTTCTCCGTTATTTCTTCTCTAAATAT CCAGGCACCAACTCTCTGCGCAACTTGATCCCAACAACGCGGGCGTTCTCATTGTTCATTTAGGATCTTCACATC GGCATGGTGTCGATGCTGACGAGATTACTCGCCGCATCGAAAAGGGCGACAATGGCTGTATCATTATGTAG |