© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|044810 |
| Gene name | |
| Location | scaffold_2:1571069..1572023 |
| Strand | - |
| Gene length (bp) | 954 |
| Transcript length (bp) | 954 |
| Coding sequence length (bp) | 954 |
| Protein length (aa) | 318 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08284 | RVP_2 | Retroviral aspartyl protease | 2.3E-11 | 32 | 134 |
| PF13975 | gag-asp_proteas | gag-polyprotein putative aspartyl protease | 5.6E-08 | 26 | 117 |
| PF13650 | Asp_protease_2 | Aspartyl protease | 9.1E-07 | 25 | 115 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT42|TF27_SCHPO | Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 30 | 317 | 7.0E-18 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 30 | 317 | 9.0E-18 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 218 | 316 | 2.0E-16 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 218 | 316 | 2.0E-16 |
| sp|P20825|POL2_DROME | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 108 | 314 | 1.0E-14 |
| sp|Q8I7P9|POL5_DROME | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 208 | 316 | 3.0E-13 |
| sp|P04323|POL3_DROME | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 191 | 312 | 2.0E-12 |
| sp|Q86TG7|PEG10_HUMAN | Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2 | 8 | 309 | 2.0E-11 |
| sp|P31843|RRPO_OENBE | RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1 | 261 | 317 | 5.0E-11 |
| sp|P10401|POLY_DROME | Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 46 | 316 | 6.0E-11 |
| sp|P03555|POL_CAMVC | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1 | 17 | 310 | 2.0E-10 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 213 | 315 | 3.0E-10 |
| sp|Q02964|POL_CAMVE | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1 | 213 | 310 | 6.0E-10 |
| sp|P03554|POL_CAMVS | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1 | 213 | 310 | 9.0E-10 |
| sp|Q00962|POL_CAMVN | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1 | 213 | 310 | 6.0E-09 |
| sp|P03556|POL_CAMVD | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1 | 213 | 310 | 1.0E-08 |
| sp|P15629|POL_SOCMV | Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2 | 201 | 314 | 2.0E-08 |
| sp|P09523|POL_FMVD | Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1 | 213 | 314 | 1.0E-06 |
| sp|Q7TN75|PEG10_MOUSE | Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2 | 8 | 133 | 2.0E-06 |
| sp|A6NKG5|RTL1_HUMAN | Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3 | 31 | 303 | 3.0E-06 |
| sp|P05400|POL_CERV | Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1 | 211 | 302 | 4.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|044810 MNNRYVVPQKRLGVQELEVKPLLTTTNGKKLKVSVMVDSGCTHTCIDEGLVKKKKIPMKKLEQPITCRNSDGTIA GKKDITKFAKIDLNINGHNEQLDAVVTPLQSSDLFLGHDWLTNHNPEINWKQGMIKFNRCPSSCSFPHTDISFEP RIRRLQSNEDTEEKELDPTNPEDLPAYMKPFAHLFNRKNFDKLPERTEWDHEINFTENAPTEISSKVYSMTPLER EELDKFLDENLATNRIRPSKSPYAAPCFFVPKKDGSLRLCQDYRKLNEITIKDKTPLPLISEVLDQLKDAKVFNK LDVIWGYNNVRIREGDE* |
| Coding | >AgabiH97|044810 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGTCATGGTCGACTCGGGATGCACACACACATGTATTGACGAAGGATTA GTAAAGAAGAAGAAGATCCCGATGAAGAAATTGGAACAGCCGATCACATGCAGGAACTCAGACGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAGCAACTGGACGCGGTC GTCACTCCATTACAGTCATCCGACCTCTTTCTAGGTCATGATTGGTTAACGAACCACAATCCCGAAATCAATTGG AAACAAGGAATGATCAAATTCAACCGGTGCCCCTCATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGCCGATTACAGTCAAACGAAGACACTGAGGAAAAAGAACTGGATCCAACGAACCCTGAGGACTTACCA GCATACATGAAACCCTTTGCCCATCTTTTTAACAGAAAGAACTTCGACAAACTGCCTGAACGAACGGAATGGGAT CACGAAATTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAGA GAAGAACTGGACAAATTCTTGGATGAAAATCTAGCTACCAATCGAATCCGACCATCGAAATCACCCTATGCAGCA CCATGTTTTTTCGTTCCCAAAAAAGACGGATCACTACGGTTATGTCAGGATTATAGGAAACTGAACGAAATCACA ATCAAGGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAGCTCAAAGACGCCAAGGTTTTCAACAAA TTGGACGTTATCTGGGGATATAACAACGTTCGGATACGAGAAGGAGATGAATAG |
| Transcript | >AgabiH97|044810 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGTCATGGTCGACTCGGGATGCACACACACATGTATTGACGAAGGATTA GTAAAGAAGAAGAAGATCCCGATGAAGAAATTGGAACAGCCGATCACATGCAGGAACTCAGACGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAGCAACTGGACGCGGTC GTCACTCCATTACAGTCATCCGACCTCTTTCTAGGTCATGATTGGTTAACGAACCACAATCCCGAAATCAATTGG AAACAAGGAATGATCAAATTCAACCGGTGCCCCTCATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGCCGATTACAGTCAAACGAAGACACTGAGGAAAAAGAACTGGATCCAACGAACCCTGAGGACTTACCA GCATACATGAAACCCTTTGCCCATCTTTTTAACAGAAAGAACTTCGACAAACTGCCTGAACGAACGGAATGGGAT CACGAAATTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAGA GAAGAACTGGACAAATTCTTGGATGAAAATCTAGCTACCAATCGAATCCGACCATCGAAATCACCCTATGCAGCA CCATGTTTTTTCGTTCCCAAAAAAGACGGATCACTACGGTTATGTCAGGATTATAGGAAACTGAACGAAATCACA ATCAAGGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAGCTCAAAGACGCCAAGGTTTTCAACAAA TTGGACGTTATCTGGGGATATAACAACGTTCGGATACGAGAAGGAGATGAATAG |
| Gene | >AgabiH97|044810 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGTCATGGTCGACTCGGGATGCACACACACATGTATTGACGAAGGATTA GTAAAGAAGAAGAAGATCCCGATGAAGAAATTGGAACAGCCGATCACATGCAGGAACTCAGACGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAGCAACTGGACGCGGTC GTCACTCCATTACAGTCATCCGACCTCTTTCTAGGTCATGATTGGTTAACGAACCACAATCCCGAAATCAATTGG AAACAAGGAATGATCAAATTCAACCGGTGCCCCTCATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGCCGATTACAGTCAAACGAAGACACTGAGGAAAAAGAACTGGATCCAACGAACCCTGAGGACTTACCA GCATACATGAAACCCTTTGCCCATCTTTTTAACAGAAAGAACTTCGACAAACTGCCTGAACGAACGGAATGGGAT CACGAAATTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAGA GAAGAACTGGACAAATTCTTGGATGAAAATCTAGCTACCAATCGAATCCGACCATCGAAATCACCCTATGCAGCA CCATGTTTTTTCGTTCCCAAAAAAGACGGATCACTACGGTTATGTCAGGATTATAGGAAACTGAACGAAATCACA ATCAAGGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAGCTCAAAGACGCCAAGGTTTTCAACAAA TTGGACGTTATCTGGGGATATAACAACGTTCGGATACGAGAAGGAGATGAATAG |