Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|044160
Gene name
Locationscaffold_2:1410234..1411403
Strand-
Gene length (bp)1169
Transcript length (bp)945
Coding sequence length (bp)945
Protein length (aa) 315

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02089 Palm_thioest Palmitoyl protein thioesterase 3.8E-91 25 295

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q20390|PPT1_CAEEL Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2 25 298 3.0E-56
sp|Q8HXW6|PPT1_MACFA Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1 21 302 3.0E-56
sp|P50897|PPT1_HUMAN Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1 21 302 4.0E-56
sp|O88531|PPT1_MOUSE Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=1 SV=2 21 302 3.0E-55
sp|P45478|PPT1_BOVIN Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1 21 302 3.0E-54
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Swissprot ID Swissprot Description Start End E-value
sp|Q20390|PPT1_CAEEL Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2 25 298 3.0E-56
sp|Q8HXW6|PPT1_MACFA Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1 21 302 3.0E-56
sp|P50897|PPT1_HUMAN Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1 21 302 4.0E-56
sp|O88531|PPT1_MOUSE Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=1 SV=2 21 302 3.0E-55
sp|P45478|PPT1_BOVIN Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1 21 302 3.0E-54
sp|P45479|PPT1_RAT Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1 21 302 3.0E-53
sp|Q9W3C7|PPT1_DROME Palmitoyl-protein thioesterase 1 OS=Drosophila melanogaster GN=Ppt1 PE=1 SV=2 17 302 6.0E-47
sp|O59747|PDF1_SCHPO Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdf1 PE=1 SV=2 12 309 4.0E-41
sp|Q54CM0|PPT3_DICDI Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1 20 297 7.0E-33
sp|O70489|PPT2_RAT Lysosomal thioesterase PPT2 OS=Rattus norvegicus GN=Ppt2 PE=2 SV=1 22 293 2.0E-21
sp|O35448|PPT2_MOUSE Lysosomal thioesterase PPT2 OS=Mus musculus GN=Ppt2 PE=1 SV=1 22 293 2.0E-21
sp|Q9UMR5|PPT2_HUMAN Lysosomal thioesterase PPT2 OS=Homo sapiens GN=PPT2 PE=1 SV=4 22 293 1.0E-20
sp|Q1JQA0|PPT2_BOVIN Lysosomal thioesterase PPT2 OS=Bos taurus GN=PPT2 PE=2 SV=1 24 293 9.0E-20
sp|Q9VKH6|PPT2_DROME Lysosomal thioesterase PPT2 homolog OS=Drosophila melanogaster GN=Ppt2 PE=2 SV=1 24 287 1.0E-19
sp|Q6GNY7|PPT2B_XENLA Lysosomal thioesterase PPT2-B OS=Xenopus laevis GN=ppt2-b PE=2 SV=1 22 293 2.0E-19
sp|Q6PCJ9|PPT2A_XENLA Lysosomal thioesterase PPT2-A OS=Xenopus laevis GN=ppt2-a PE=2 SV=1 24 287 5.0E-16
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|044160
MSLWFILLGFAVHLALASTIPSPRPLVLWHGLGDSHSSPGMLEFMNLIKEIHPGIFVHSIFISEDLNEDKKAGFY
GNVLEQLEFVADQLAAIPELEAGFDAVGLSQGGQFLRAYVECYNNPPVNNLITFGSQHMGISDIPICRPFDFLCQ
IARKAAKRAVYSTWAQENLIQAQYYRDPNNYASYLHANHFLPYVNNEIEEARNQTYARNFASLSNLVLVMFTEDK
LVVPKESSWFGYEELRDSVVSDASDQQRFLAMDKKIIPMREQPLYIEDWIGLRELDERGAVVFSECVGEHMEMGD
CWEELIVEYTGGSL*
Coding >AgabiH97|044160
ATGTCACTCTGGTTCATCCTCCTCGGTTTCGCTGTTCACCTTGCGTTGGCATCTACCATCCCGTCTCCACGGCCA
CTTGTTCTCTGGCATGGTTTGGGGGATTCGCATTCCTCACCCGGAATGCTTGAATTTATGAACCTCATCAAGGAG
ATACACCCCGGAATCTTCGTCCATTCCATATTTATTTCGGAAGACCTGAATGAAGACAAGAAAGCTGGTTTCTAC
GGAAACGTTCTTGAGCAGCTGGAATTTGTGGCAGATCAGCTCGCCGCCATACCAGAACTGGAAGCTGGATTCGAC
GCGGTGGGCCTCTCGCAAGGTGGTCAATTCTTGCGAGCATATGTCGAATGTTACAATAATCCACCCGTCAATAAC
CTCATCACGTTTGGCTCTCAACACATGGGTATCTCTGATATACCAATATGCAGACCGTTCGATTTTCTATGTCAG
ATTGCTCGAAAGGCAGCCAAGAGAGCGGTTTATAGTACCTGGGCTCAAGAAAATCTGATTCAGGCCCAGTATTAT
CGTGATCCAAATAATTATGCATCATATCTCCACGCGAACCACTTCCTTCCATACGTCAACAATGAAATCGAGGAA
GCGCGCAATCAGACTTATGCACGCAACTTTGCTTCCCTGAGTAACCTCGTGCTGGTCATGTTTACAGAAGACAAG
TTGGTGGTGCCAAAAGAGAGCTCCTGGTTCGGATATGAAGAATTGAGAGACAGCGTTGTGTCCGACGCGTCGGAT
CAGCAGCGCTTCTTAGCAATGGACAAGAAGATCATTCCGATGAGGGAACAACCGCTGTATATTGAAGATTGGATA
GGATTGCGGGAGCTGGATGAGCGCGGGGCGGTTGTTTTTTCCGAGTGCGTTGGCGAGCACATGGAGATGGGAGAC
TGCTGGGAAGAGCTGATTGTCGAGTACACGGGAGGGAGTCTGTAG
Transcript >AgabiH97|044160
ATGTCACTCTGGTTCATCCTCCTCGGTTTCGCTGTTCACCTTGCGTTGGCATCTACCATCCCGTCTCCACGGCCA
CTTGTTCTCTGGCATGGTTTGGGGGATTCGCATTCCTCACCCGGAATGCTTGAATTTATGAACCTCATCAAGGAG
ATACACCCCGGAATCTTCGTCCATTCCATATTTATTTCGGAAGACCTGAATGAAGACAAGAAAGCTGGTTTCTAC
GGAAACGTTCTTGAGCAGCTGGAATTTGTGGCAGATCAGCTCGCCGCCATACCAGAACTGGAAGCTGGATTCGAC
GCGGTGGGCCTCTCGCAAGGTGGTCAATTCTTGCGAGCATATGTCGAATGTTACAATAATCCACCCGTCAATAAC
CTCATCACGTTTGGCTCTCAACACATGGGTATCTCTGATATACCAATATGCAGACCGTTCGATTTTCTATGTCAG
ATTGCTCGAAAGGCAGCCAAGAGAGCGGTTTATAGTACCTGGGCTCAAGAAAATCTGATTCAGGCCCAGTATTAT
CGTGATCCAAATAATTATGCATCATATCTCCACGCGAACCACTTCCTTCCATACGTCAACAATGAAATCGAGGAA
GCGCGCAATCAGACTTATGCACGCAACTTTGCTTCCCTGAGTAACCTCGTGCTGGTCATGTTTACAGAAGACAAG
TTGGTGGTGCCAAAAGAGAGCTCCTGGTTCGGATATGAAGAATTGAGAGACAGCGTTGTGTCCGACGCGTCGGAT
CAGCAGCGCTTCTTAGCAATGGACAAGAAGATCATTCCGATGAGGGAACAACCGCTGTATATTGAAGATTGGATA
GGATTGCGGGAGCTGGATGAGCGCGGGGCGGTTGTTTTTTCCGAGTGCGTTGGCGAGCACATGGAGATGGGAGAC
TGCTGGGAAGAGCTGATTGTCGAGTACACGGGAGGGAGTCTGTAG
Gene >AgabiH97|044160
ATGTCACTCTGGTTCATCCTCCTCGGTTTCGCTGTTCACCTTGCGTTGGCATCTACCATCCCGTCTCCACGGCCA
CTTGTTCTCTGGCATGGTTTGGGTAGGAATGAGTCCTTGGGAATACAGAGTAGCATTTGCCCTTAGCTAATTTCC
TCGCGCAGGGGATTCGCATTCCTCACCCGGAATGCTTGAATTTATGAACCTCATCAAGGAGATACACCCCGGAAT
CTTCGTCCATTCCATATTTATTTCGGAAGACCTGAATGAAGACAAGAAAGCTGGTTTCGTATGACAGCCGCGTCT
TTCAAAGTTATTCTACTGATTATCGAGAAATGGGTGCATGTAGTACGGAAACGTTCTTGAGCAGCTGGAATTTGT
GGCAGATCAGCTCGCCGCCATACCAGAACTGGAAGCTGGATTCGACGCGGTGGGCCTCTCGCAAGGTTTGTCCAG
CTACTCTATGTGTACTGTTAAGCTAGTATTGAAACAAAGAAGGTGGTCAATTCTTGCGAGCATATGTCGAATGTT
ACAATAATCCACCCGTCAATAACCTCATCACGTTTGGCTCTCAACACATGGGTATCTCTGATATACCAATATGCA
GACCGTTCGATTTTCTATGTCAGATTGCTCGAAAGGCAGCCAAGAGAGCGGTTTATAGTACCTGGGCTCAAGAAA
ATCTGATTCAGGTGAGCGTTGGCGTTGGTGACCTGAAGATGATTAATTCTTATGTCCTATAGGCCCAGTATTATC
GTGATCCAAATAATTATGCATCATATCTCCACGCGAACCACTTCCTTCCATACGTCAACAATGAAATCGAGGAAG
CGCGCAATCAGACTTATGCACGCAACTTTGCTTCCCTGAGTAACCTCGTGCTGGTCATGTTTACAGAAGACAAGT
TGGTGGTGCCAAAAGAGAGCTCCTGGTTCGGATATGAAGAATTGAGAGACAGCGTTGTGTCCGACGCGTCGGATC
AGCAGCGCTTCTTAGCAATGGACAAGAAGATCATTCCGATGAGGGAACAACCGCTGTATATTGAAGATTGGATAG
GATTGCGGGAGCTGGATGAGCGCGGGGCGGTTGTTTTTTCCGAGTGCGTTGGCGAGCACATGGAGATGGGAGACT
GCTGGGAAGAGCTGATTGTCGAGTACACGGGAGGGAGTCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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