Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|043870
Gene name
Location	scaffold_2:1341186..1343435
Strand	+
Gene length (bp)	2249
Transcript length (bp)	1761
Coding sequence length (bp)	1761
Protein length (aa)	587

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13540	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	2.7E-07	419	443

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|P38352|SAF1_YEAST	SCF-associated factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAF1 PE=1 SV=2	373	516	3.0E-11
sp|Q8BK67|RCC2_MOUSE	Protein RCC2 OS=Mus musculus GN=Rcc2 PE=1 SV=1	79	240	5.0E-06
sp|Q9P258|RCC2_HUMAN	Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2	79	240	9.0E-06

GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|043870 MPTNIVDVPPEILLDNLFPVLPVTDLLSLTVTSKYFLFLCSDETLWYRKLKADYNFDGSGTARRTGWKFIYRGLY RPKVFVWGEAENSRLGLRQYPGSRSAGVPFPVQLDIPGANIIKLIAGGMSFHALDTRGNMYVWGTLDGTMHSLHL DGYAAKGKPARNPLKLEMPDPIRSISCGRLHSCSLDIKGRIWNFVNWGRPFRLSSHLLSQPDSEPIQIECGWSFS SALLKNGEVLVWWPTVGALQEEVDTRFQSMDESGVGEAQARNGIIPCHTWTAAVDPVLLPSLPSLPDIAGIGEDF RELPPRLIEIGGMDSMIIGLTNYGHVLRFRGLDYEGAIGTSGWQYLPEFSETARICQLSEFSDGNFELPETIKIT HVSAHFMHFSAFSTGSCSIVLQGEIDTDPDSKPKIIPELQNRDIISVEFGDYHSAALSASGKLYTWGSYSKGALG LGDPLTLPIGTPGGFANQAQLNGGRGRPPSVTVPTEVRFDHGRRKSKDRFCFSVTAAGWHTGALVIDLEPDENEE DDKIQFRSQQQQSQDPDSWSTPPIVPQIPARGWGMPFIHRIGFAGRGMHRGQSNRDGASGS*
Coding	>AgabiH97|043870 ATGCCTACCAATATCGTCGATGTTCCACCAGAAATTCTTCTCGACAACCTGTTCCCTGTTTTACCAGTCACTGAC CTTCTCTCGTTGACCGTAACATCAAAGTACTTCTTATTCTTGTGCTCAGATGAAACGCTCTGGTATCGCAAACTC AAGGCAGACTATAATTTTGATGGATCGGGGACGGCACGACGTACAGGTTGGAAGTTTATCTATAGAGGATTATAT AGACCCAAAGTGTTTGTATGGGGAGAGGCTGAAAATTCACGATTAGGACTGAGGCAATACCCTGGGTCCAGATCT GCTGGTGTCCCTTTTCCTGTCCAGCTGGATATCCCTGGAGCCAACATTATCAAGCTCATCGCAGGCGGCATGTCT TTTCATGCCCTCGACACGCGGGGCAATATGTATGTCTGGGGGACTCTCGATGGGACGATGCATAGTCTTCATCTG GACGGGTATGCTGCTAAGGGCAAGCCTGCAAGAAATCCTTTGAAATTGGAGATGCCTGACCCAATCAGAAGTATA AGCTGTGGGCGTCTGCACTCCTGCTCTTTAGATATCAAAGGCAGAATTTGGAACTTTGTTAATTGGGGACGACCC TTTCGGCTCTCCTCTCACCTTTTGTCTCAGCCTGACTCCGAGCCTATCCAGATTGAATGTGGATGGTCATTCTCG TCTGCTCTCCTGAAAAATGGTGAAGTTCTCGTTTGGTGGCCCACAGTGGGTGCTCTCCAGGAAGAGGTCGATACG CGATTCCAAAGTATGGATGAATCAGGGGTCGGGGAAGCACAAGCGAGGAATGGTATTATACCATGCCACACGTGG ACTGCAGCCGTCGACCCTGTCCTCCTACCTTCATTGCCATCTTTACCTGATATCGCAGGTATCGGCGAGGATTTC AGGGAACTCCCACCTCGGTTGATTGAAATCGGGGGTATGGACAGCATGATAATTGGACTGACTAACTATGGGCAC GTCCTCAGATTCCGAGGACTTGATTATGAGGGCGCTATTGGCACTTCAGGTTGGCAATATCTTCCAGAGTTCAGC GAGACAGCTCGAATTTGCCAACTGTCCGAGTTTTCAGACGGAAATTTTGAACTACCGGAAACTATAAAGATCACC CATGTCTCCGCCCACTTCATGCATTTCTCTGCGTTCTCGACAGGCTCCTGTTCCATAGTTCTCCAGGGGGAGATT GATACAGATCCTGACTCCAAACCCAAGATAATACCCGAGCTCCAGAACAGAGACATCATATCTGTTGAATTTGGT GACTATCATAGTGCTGCCCTTTCAGCAAGTGGGAAATTATACACTTGGGGTTCATATTCAAAGGGAGCGCTGGGT TTGGGCGATCCATTGACACTGCCAATAGGCACACCGGGTGGGTTTGCAAATCAAGCTCAGTTGAATGGAGGCAGG GGCAGACCACCAAGTGTCACAGTACCAACAGAGGTGAGATTTGATCATGGGCGGAGAAAGTCCAAGGATAGGTTT TGCTTTTCTGTCACCGCTGCCGGTTGGCACACGGGAGCTCTAGTCATCGACCTTGAGCCCGACGAAAATGAGGAA GATGACAAGATTCAATTCCGGTCTCAGCAACAGCAATCGCAAGATCCGGATAGTTGGTCTACTCCGCCGATCGTA CCTCAGATACCCGCTCGAGGTTGGGGTATGCCTTTTATCCATCGTATTGGGTTCGCTGGGCGTGGAATGCATCGA GGTCAGTCGAATAGAGATGGAGCTTCGGGCTCATGA
Transcript	>AgabiH97|043870 ATGCCTACCAATATCGTCGATGTTCCACCAGAAATTCTTCTCGACAACCTGTTCCCTGTTTTACCAGTCACTGAC CTTCTCTCGTTGACCGTAACATCAAAGTACTTCTTATTCTTGTGCTCAGATGAAACGCTCTGGTATCGCAAACTC AAGGCAGACTATAATTTTGATGGATCGGGGACGGCACGACGTACAGGTTGGAAGTTTATCTATAGAGGATTATAT AGACCCAAAGTGTTTGTATGGGGAGAGGCTGAAAATTCACGATTAGGACTGAGGCAATACCCTGGGTCCAGATCT GCTGGTGTCCCTTTTCCTGTCCAGCTGGATATCCCTGGAGCCAACATTATCAAGCTCATCGCAGGCGGCATGTCT TTTCATGCCCTCGACACGCGGGGCAATATGTATGTCTGGGGGACTCTCGATGGGACGATGCATAGTCTTCATCTG GACGGGTATGCTGCTAAGGGCAAGCCTGCAAGAAATCCTTTGAAATTGGAGATGCCTGACCCAATCAGAAGTATA AGCTGTGGGCGTCTGCACTCCTGCTCTTTAGATATCAAAGGCAGAATTTGGAACTTTGTTAATTGGGGACGACCC TTTCGGCTCTCCTCTCACCTTTTGTCTCAGCCTGACTCCGAGCCTATCCAGATTGAATGTGGATGGTCATTCTCG TCTGCTCTCCTGAAAAATGGTGAAGTTCTCGTTTGGTGGCCCACAGTGGGTGCTCTCCAGGAAGAGGTCGATACG CGATTCCAAAGTATGGATGAATCAGGGGTCGGGGAAGCACAAGCGAGGAATGGTATTATACCATGCCACACGTGG ACTGCAGCCGTCGACCCTGTCCTCCTACCTTCATTGCCATCTTTACCTGATATCGCAGGTATCGGCGAGGATTTC AGGGAACTCCCACCTCGGTTGATTGAAATCGGGGGTATGGACAGCATGATAATTGGACTGACTAACTATGGGCAC GTCCTCAGATTCCGAGGACTTGATTATGAGGGCGCTATTGGCACTTCAGGTTGGCAATATCTTCCAGAGTTCAGC GAGACAGCTCGAATTTGCCAACTGTCCGAGTTTTCAGACGGAAATTTTGAACTACCGGAAACTATAAAGATCACC CATGTCTCCGCCCACTTCATGCATTTCTCTGCGTTCTCGACAGGCTCCTGTTCCATAGTTCTCCAGGGGGAGATT GATACAGATCCTGACTCCAAACCCAAGATAATACCCGAGCTCCAGAACAGAGACATCATATCTGTTGAATTTGGT GACTATCATAGTGCTGCCCTTTCAGCAAGTGGGAAATTATACACTTGGGGTTCATATTCAAAGGGAGCGCTGGGT TTGGGCGATCCATTGACACTGCCAATAGGCACACCGGGTGGGTTTGCAAATCAAGCTCAGTTGAATGGAGGCAGG GGCAGACCACCAAGTGTCACAGTACCAACAGAGGTGAGATTTGATCATGGGCGGAGAAAGTCCAAGGATAGGTTT TGCTTTTCTGTCACCGCTGCCGGTTGGCACACGGGAGCTCTAGTCATCGACCTTGAGCCCGACGAAAATGAGGAA GATGACAAGATTCAATTCCGGTCTCAGCAACAGCAATCGCAAGATCCGGATAGTTGGTCTACTCCGCCGATCGTA CCTCAGATACCCGCTCGAGGTTGGGGTATGCCTTTTATCCATCGTATTGGGTTCGCTGGGCGTGGAATGCATCGA GGTCAGTCGAATAGAGATGGAGCTTCGGGCTCATGA
Gene	>AgabiH97|043870 ATGCCTACCAATATCGTCGATGTTCCACCAGAAATTCTTCTCGACAACCTGTTCCCTGTTTTACCAGTCACTGAC CTTCTCTCGTTGACCGTAACATCAAAGGTGGTTAATATCTCGACCCACGAAAAGATGAAGCTTTAACCGCCGAGT CATGTTCATCCTCTAGTACTTCTTATTCTTGTGCTCAGATGAAACGCTCTGGTATCGCAAACTCAAGGCAGACTA TAATTTTGATGGATCGGGGACGGCACGACGTACAGGTTGGAAGTTTATCTATAGAGGATTATATAGACCCAAAGG TAACATCTACCCTGCTGCGACATAAATGTTTTAATTTCTTCATTGCAGTGTTTGTATGGGGGTGAGTTCTATCAC CTGGTACTCATAGCATTCGTCGCCGAGTTGACTATTCTGTAGAGAGGCTGAAAATTCACGATTAGGACTGAGGCA ATACCCTGGGTCCAGATCTGCTGGTGTCCCTTTTCCTGTCCAGCTGGATATCCCTGGAGCCAACATTATCAAGCT CATCGCAGGCGGCATGTGGGTGCACTACTCTTTCTAATGTTTATATTGTCCACATTGCGTTTCAAGGTCTTTTCA TGCCCTCGACACGCGGGGCAATATGTATGTCTGGGGTATGTGCGGGGCCCTTTCTCAGGCATTTTAGCCACTCAT ACTGAAAGGAACAGGGACTCTCGATGGGACGATGCATAGTCTTCATCTGGACGGGTATGCTGCTAAGGGCAAGCC TGCAAGAAATCCTTTGAAATTGGAGATGCCTGACCCAATCAGAAGTATAAGGTAAATACAGCATTTATTTGACAT GCGTATTGAGTCTTTGATTGTCGCTGTAGCTGTGGGCGTCTGCACTCCTGCTCTTTAGATATCAAAGGCAGAATT TGGAACTTTGTTAATTGGGGACGACCCTTTCGGCTCTCCTCTCACCTTTTGTCTCAGCCTGACTCCGAGCCTATC CAGATTGAATGTGGATGGTCATTCTCGTCTGCTCTCCTGAAAAATGGTGAAGTTCTCGTTTGGTGGCCCACAGTG GGTGCTCTCCAGGAAGAGGTCGATACGCGATTCCAAAGTATGGATGAATCAGGGGTCGGGGAAGCACAAGCGAGG AATGGTATTATACCATGCCACACGTGGACTGCAGCCGTCGACCCTGTCCTCCTACCTTCATTGCCATCTTTACCT GATATCGCAGGTATCGGCGAGGATTTCAGGGAACTCCCACCTCGGTTGATTGAAATCGGGGGTATGGACAGCATG ATAATTGGACTGACTAACTATGGGCACGTCCTCAGATTCCGAGGACTTGATTATGAGGGCGCTATTGGCACTTCA GGTTGGCAATATGTATGTCCACCGATAGGTATATGAACACCTCTGATGTCCAAACTAGCTTCCAGAGTTCAGCGA GACAGCTCGAATTTGCCAACTGTCCGAGTTTTCAGACGGAAATTTTGAACTACCGGAAACTATAAAGATCACCCA TGTCAGTATTCGTCTTTACGCTCATAAATGTCTCAATCTTTTAACCAACTCCACCTTTCAGGTCTCCGCCCACTT CATGCATTTCTCTGCGTTCTCGACAGGCTCCTGTTCCATAGTTCTCCAGGGGGAGATTGATACAGATCCTGACTC CAAACCCAAGATAATACCCGAGCTCCAGAACAGAGACATCATATCTGTTGAATTTGGTGACTATCATAGTGCTGC CCTTTCAGCAAGTGGGAAATTATACACTTGGGGTTCATATTCAAAGGGAGCGCTGGGTTTGGGCGATCCATTGAC ACTGCCAATAGGCACACCGGGTGGGTTTGCAAATCAAGCTCAGTTGAATGGAGGCAGGGGCAGACCACCAAGTGT CACAGTACCAACAGAGGTGAGATTTGATCATGGGCGGAGAAAGTCCAAGGATAGGTTTTGCTTTTCTGTCACCGC TGCCGGTTGGCACACGGGAGCTCTAGTCATCGACCTTGAGGTGTGTCGATTCCCCACTTTGATCGATAGATAGTC ATTAGAGCCCTTTCGTATAGCCCGACGAAAATGAGGAAGATGACAAGATTCAATTCCGGTCTCAGCAACAGCAAT CGCAAGATCCGGATAGTTGGTCTACTCCGCCGATCGTACCTCAGATACCCGCTCGAGGTTGGGGTATGCCTTTTA TCCATCGTATTGGGTTCGCTGGGCGTGGAATGCATCGAGGTCAGTCGAATAGAGATGGAGCTTCGGGCTCATGA