Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|043820
Gene name
Locationscaffold_2:1327131..1328205
Strand+
Gene length (bp)1074
Transcript length (bp)912
Coding sequence length (bp)912
Protein length (aa) 304

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13445 zf-RING_UBOX RING-type zinc-finger 1.8E-07 156 184
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 8.4E-07 156 185
PF13639 zf-RING_2 Ring finger domain 3.2E-06 155 188
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.7E-05 156 185

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 49.57 28.20 70.94
Initials Initials knots 54.90 31.54 78.26
Pileal_Stipeal_center Stage I stipe center 56.69 32.67 80.70
Pileal_Stipeal_shell Stage I stipe shell 69.67 40.76 98.58
DIF_stipe_center Stage II stipe center 49.83 28.41 71.26
DIF_stipe_shell Stage II stipe shell 56.73 32.66 80.79
DIF_stipe_skin Stage II stipe skin 60.38 34.99 85.76
DIF_cap_skin Stage II cap skin 69.69 40.70 98.68
DIF_cap_tissue Stage II cap tissue 66.71 39.01 94.41
DIF_gill_tissue Stage II gill tissue 64.33 37.54 91.13
YFB_stipe_center Young fruiting body stipe center 60.30 34.57 86.02
YFB_stipe_shell Young fruiting body stipe shell 67.03 39.18 94.88
YFB_stipe_skin Young fruiting body stipe skin 64.02 37.19 90.85
YFB_cap_skin Young fruiting body cap skin 71.62 41.95 101.29
YFB_cap_tissue Young fruiting body cap tissue 65.61 38.27 92.95
YFB_gill_tissue Young fruiting body gill tissue 82.51 48.63 116.39
YFB_veil Young fruiting body veil 78.60 46.38 110.82

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.463670 no
Casing YFB_stipe_center 0.633834 no
Casing YFB_stipe_shell 0.373177 no
Casing YFB_stipe_skin 0.477168 no
Casing YFB_cap_skin 0.242985 no
Casing YFB_cap_tissue 0.422068 no
Casing YFB_gill_tissue 0.071968 no
Casing YFB_veil 0.111025 no
Casing Initials 0.839436 no
Casing Pileal_Stipeal_center 0.771244 no
Casing Pileal_Stipeal_shell 0.294832 no
Casing DIF_stipe_center 0.991979 no
Casing DIF_stipe_shell 0.771379 no
Casing DIF_stipe_skin 0.615356 no
Casing DIF_cap_skin 0.293079 no
Casing DIF_cap_tissue 0.382982 no
DIF_gill_tissue YFB_stipe_center 0.905517 no
DIF_gill_tissue YFB_stipe_shell 0.941014 no
DIF_gill_tissue YFB_stipe_skin 0.992383 no
DIF_gill_tissue YFB_cap_skin 0.821079 no
DIF_gill_tissue YFB_cap_tissue 0.972976 no
DIF_gill_tissue YFB_gill_tissue 0.484152 no
DIF_gill_tissue YFB_veil 0.601321 no
YFB_stipe_center YFB_stipe_shell 0.827921 no
YFB_stipe_center YFB_stipe_skin 0.913662 no
YFB_stipe_center YFB_cap_skin 0.682565 no
YFB_stipe_center YFB_cap_tissue 0.873832 no
YFB_stipe_center YFB_gill_tissue 0.353874 no
YFB_stipe_center YFB_veil 0.454978 no
YFB_stipe_shell YFB_stipe_skin 0.932826 no
YFB_stipe_shell YFB_cap_skin 0.898602 no
YFB_stipe_shell YFB_cap_tissue 0.970661 no
YFB_stipe_shell YFB_gill_tissue 0.586294 no
YFB_stipe_shell YFB_veil 0.702572 no
YFB_stipe_skin YFB_cap_skin 0.809347 no
YFB_stipe_skin YFB_cap_tissue 0.966795 no
YFB_stipe_skin YFB_gill_tissue 0.475295 no
YFB_stipe_skin YFB_veil 0.588640 no
YFB_cap_skin YFB_cap_tissue 0.866027 no
YFB_cap_skin YFB_gill_tissue 0.748179 no
YFB_cap_skin YFB_veil 0.852315 no
YFB_cap_tissue YFB_gill_tissue 0.537234 no
YFB_cap_tissue YFB_veil 0.651629 no
YFB_gill_tissue YFB_veil 0.928205 no
Initials DIF_gill_tissue 0.712265 no
Initials YFB_stipe_center 0.856474 no
Initials YFB_stipe_shell 0.615697 no
Initials YFB_stipe_skin 0.725159 no
Initials YFB_cap_skin 0.454492 no
Initials YFB_cap_tissue 0.672072 no
Initials YFB_gill_tissue 0.179947 no
Initials YFB_veil 0.249833 no
Initials Pileal_Stipeal_center 0.957463 no
Initials Pileal_Stipeal_shell 0.522819 no
Initials DIF_stipe_center 0.846629 no
Initials DIF_stipe_shell 0.955728 no
Initials DIF_stipe_skin 0.847678 no
Initials DIF_cap_skin 0.520785 no
Initials DIF_cap_tissue 0.630037 no
Pileal_Stipeal_center DIF_gill_tissue 0.780789 no
Pileal_Stipeal_center YFB_stipe_center 0.909610 no
Pileal_Stipeal_center YFB_stipe_shell 0.692364 no
Pileal_Stipeal_center YFB_stipe_skin 0.794355 no
Pileal_Stipeal_center YFB_cap_skin 0.530064 no
Pileal_Stipeal_center YFB_cap_tissue 0.744339 no
Pileal_Stipeal_center YFB_gill_tissue 0.226375 no
Pileal_Stipeal_center YFB_veil 0.313441 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.604297 no
Pileal_Stipeal_center DIF_stipe_center 0.779750 no
Pileal_Stipeal_center DIF_stipe_shell 0.998891 no
Pileal_Stipeal_center DIF_stipe_skin 0.905081 no
Pileal_Stipeal_center DIF_cap_skin 0.600264 no
Pileal_Stipeal_center DIF_cap_tissue 0.704579 no
Pileal_Stipeal_shell DIF_gill_tissue 0.877788 no
Pileal_Stipeal_shell YFB_stipe_center 0.750307 no
Pileal_Stipeal_shell YFB_stipe_shell 0.945080 no
Pileal_Stipeal_shell YFB_stipe_skin 0.870336 no
Pileal_Stipeal_shell YFB_cap_skin 0.961556 no
Pileal_Stipeal_shell YFB_cap_tissue 0.913164 no
Pileal_Stipeal_shell YFB_gill_tissue 0.683128 no
Pileal_Stipeal_shell YFB_veil 0.795709 no
Pileal_Stipeal_shell DIF_stipe_center 0.300978 no
Pileal_Stipeal_shell DIF_stipe_shell 0.606480 no
Pileal_Stipeal_shell DIF_stipe_skin 0.740683 no
Pileal_Stipeal_shell DIF_cap_skin 0.999591 no
Pileal_Stipeal_shell DIF_cap_tissue 0.939373 no
DIF_stipe_center DIF_gill_tissue 0.474750 no
DIF_stipe_center YFB_stipe_center 0.643093 no
DIF_stipe_center YFB_stipe_shell 0.378882 no
DIF_stipe_center YFB_stipe_skin 0.486680 no
DIF_stipe_center YFB_cap_skin 0.247260 no
DIF_stipe_center YFB_cap_tissue 0.430398 no
DIF_stipe_center YFB_gill_tissue 0.074130 no
DIF_stipe_center YFB_veil 0.111638 no
DIF_stipe_center DIF_stipe_shell 0.781518 no
DIF_stipe_center DIF_stipe_skin 0.624262 no
DIF_stipe_center DIF_cap_skin 0.300880 no
DIF_stipe_center DIF_cap_tissue 0.390333 no
DIF_stipe_shell DIF_gill_tissue 0.781427 no
DIF_stipe_shell YFB_stipe_center 0.912003 no
DIF_stipe_shell YFB_stipe_shell 0.694930 no
DIF_stipe_shell YFB_stipe_skin 0.795974 no
DIF_stipe_shell YFB_cap_skin 0.534033 no
DIF_stipe_shell YFB_cap_tissue 0.745540 no
DIF_stipe_shell YFB_gill_tissue 0.231439 no
DIF_stipe_shell YFB_veil 0.317511 no
DIF_stipe_shell DIF_stipe_skin 0.907506 no
DIF_stipe_shell DIF_cap_skin 0.602887 no
DIF_stipe_shell DIF_cap_tissue 0.707811 no
DIF_stipe_skin DIF_gill_tissue 0.904948 no
DIF_stipe_skin YFB_stipe_center 0.997655 no
DIF_stipe_skin YFB_stipe_shell 0.824673 no
DIF_stipe_skin YFB_stipe_skin 0.913556 no
DIF_stipe_skin YFB_cap_skin 0.672267 no
DIF_stipe_skin YFB_cap_tissue 0.872410 no
DIF_stipe_skin YFB_gill_tissue 0.331689 no
DIF_stipe_skin YFB_veil 0.439952 no
DIF_stipe_skin DIF_cap_skin 0.742748 no
DIF_stipe_skin DIF_cap_tissue 0.836849 no
DIF_cap_skin DIF_gill_tissue 0.875473 no
DIF_cap_skin YFB_stipe_center 0.747197 no
DIF_cap_skin YFB_stipe_shell 0.944584 no
DIF_cap_skin YFB_stipe_skin 0.867782 no
DIF_cap_skin YFB_cap_skin 0.961870 no
DIF_cap_skin YFB_cap_tissue 0.913037 no
DIF_cap_skin YFB_gill_tissue 0.682963 no
DIF_cap_skin YFB_veil 0.793115 no
DIF_cap_skin DIF_cap_tissue 0.939504 no
DIF_cap_tissue DIF_gill_tissue 0.949106 no
DIF_cap_tissue YFB_stipe_center 0.837092 no
DIF_cap_tissue YFB_stipe_shell 0.992548 no
DIF_cap_tissue YFB_stipe_skin 0.941912 no
DIF_cap_tissue YFB_cap_skin 0.890791 no
DIF_cap_tissue YFB_cap_tissue 0.977165 no
DIF_cap_tissue YFB_gill_tissue 0.573147 no
DIF_cap_tissue YFB_veil 0.690742 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|043820
MPRASSPPAAHRQRTKFSPIPSKPTSRHQHSPSLILELSSDDSALSPLHSPTKSPSQQRPKNPSNNARIIPSSDV
IEISSDDDDGPPSQASIVADLRKQVSKLKQENERYGKECIVLKQALARSHAELKEANASKLESADGKLVLELSKL
EDTISCEICTNRLYTPYLLPGCGHTFCLSCLRDWFGMTHAQFLQTNPHWNPNAQNQNILRIRSLLRPEYLVHPQI
QHEMLHIQQPQPQFTCPTCRKRVYQRPVEVYALKSLIRMSLSANEAEKARIPPDTTVVEKRRGRLVVVDPWDGYF
PRE*
Coding >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT
GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC
GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA
TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC
CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT
CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG
CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA
ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT
CCTAGAGAATAG
Transcript >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT
GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC
GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA
TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC
CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT
CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG
CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA
ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT
CCTAGAGAATAG
Gene >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGTATGTCCTTCTTTGATAAACATCACCTTTATAAAACTAATTTTATCAAAGGAAAACGAA
CGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCATGCAGAGCTCAAGGAAGCAAATGCA
TCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGTGCGTTCATCAGCATCATTTTCAATATACCCCCAAATT
AATTACTGCGTATAGGAACTCTCCAAACTCGAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACA
CCCTACCTGTACGTTCCATGCATTGTTCCAAAAAAGGCGATGAAATTAACTGCATATATAAACAGCTTACCAGGT
TGCGGACATACATTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAAC
CCTCATTGGAACCCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTT
CACCCCCAAATTCAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAA
CGAGTTTACCAGCGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCT
GAGAAGGCGAGAATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGG
GATGGTTACTTTCCTAGAGAATAG

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