Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|043820
Gene name
Locationscaffold_2:1327131..1328205
Strand+
Gene length (bp)1074
Transcript length (bp)912
Coding sequence length (bp)912
Protein length (aa) 304

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13445 zf-RING_UBOX RING-type zinc-finger 1.8E-07 156 184
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 8.4E-07 156 185
PF13639 zf-RING_2 Ring finger domain 3.2E-06 155 188
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.7E-05 156 185

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|043820
MPRASSPPAAHRQRTKFSPIPSKPTSRHQHSPSLILELSSDDSALSPLHSPTKSPSQQRPKNPSNNARIIPSSDV
IEISSDDDDGPPSQASIVADLRKQVSKLKQENERYGKECIVLKQALARSHAELKEANASKLESADGKLVLELSKL
EDTISCEICTNRLYTPYLLPGCGHTFCLSCLRDWFGMTHAQFLQTNPHWNPNAQNQNILRIRSLLRPEYLVHPQI
QHEMLHIQQPQPQFTCPTCRKRVYQRPVEVYALKSLIRMSLSANEAEKARIPPDTTVVEKRRGRLVVVDPWDGYF
PRE*
Coding >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT
GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC
GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA
TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC
CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT
CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG
CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA
ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT
CCTAGAGAATAG
Transcript >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT
GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC
GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA
TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC
CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT
CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG
CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA
ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT
CCTAGAGAATAG
Gene >AgabiH97|043820
ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC
TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG
CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC
ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT
TCGAAACTCAAACAAGTATGTCCTTCTTTGATAAACATCACCTTTATAAAACTAATTTTATCAAAGGAAAACGAA
CGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCATGCAGAGCTCAAGGAAGCAAATGCA
TCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGTGCGTTCATCAGCATCATTTTCAATATACCCCCAAATT
AATTACTGCGTATAGGAACTCTCCAAACTCGAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACA
CCCTACCTGTACGTTCCATGCATTGTTCCAAAAAAGGCGATGAAATTAACTGCATATATAAACAGCTTACCAGGT
TGCGGACATACATTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAAC
CCTCATTGGAACCCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTT
CACCCCCAAATTCAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAA
CGAGTTTACCAGCGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCT
GAGAAGGCGAGAATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGG
GATGGTTACTTTCCTAGAGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail