© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|043820 |
| Gene name | |
| Location | scaffold_2:1327131..1328205 |
| Strand | + |
| Gene length (bp) | 1074 |
| Transcript length (bp) | 912 |
| Coding sequence length (bp) | 912 |
| Protein length (aa) | 304 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.8E-07 | 156 | 184 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 8.4E-07 | 156 | 185 |
| PF13639 | zf-RING_2 | Ring finger domain | 3.2E-06 | 155 | 188 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.7E-05 | 156 | 185 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|043820 MPRASSPPAAHRQRTKFSPIPSKPTSRHQHSPSLILELSSDDSALSPLHSPTKSPSQQRPKNPSNNARIIPSSDV IEISSDDDDGPPSQASIVADLRKQVSKLKQENERYGKECIVLKQALARSHAELKEANASKLESADGKLVLELSKL EDTISCEICTNRLYTPYLLPGCGHTFCLSCLRDWFGMTHAQFLQTNPHWNPNAQNQNILRIRSLLRPEYLVHPQI QHEMLHIQQPQPQFTCPTCRKRVYQRPVEVYALKSLIRMSLSANEAEKARIPPDTTVVEKRRGRLVVVDPWDGYF PRE* |
| Coding | >AgabiH97|043820 ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT CCTAGAGAATAG |
| Transcript | >AgabiH97|043820 ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT TCGAAACTCAAACAAGAAAACGAACGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCAT GCAGAGCTCAAGGAAGCAAATGCATCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGAACTCTCCAAACTC GAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACACCCTACCTCTTACCAGGTTGCGGACATACA TTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAACCCTCATTGGAAC CCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTTCACCCCCAAATT CAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAACGAGTTTACCAG CGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCTGAGAAGGCGAGA ATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGGGATGGTTACTTT CCTAGAGAATAG |
| Gene | >AgabiH97|043820 ATGCCCCGGGCATCGTCGCCTCCAGCAGCCCACCGCCAACGCACAAAATTCTCGCCAATACCCTCGAAACCTACC TCAAGACATCAACACTCGCCCTCTCTCATCCTCGAACTCTCCTCCGATGACTCGGCGCTTTCTCCTCTTCATTCG CCTACCAAATCCCCTTCTCAGCAGCGCCCAAAGAATCCCTCAAACAATGCCCGCATAATCCCTTCTTCGGACGTC ATAGAAATCTCATCGGATGACGATGATGGCCCACCCTCTCAAGCGTCTATTGTCGCCGATCTACGGAAACAGGTT TCGAAACTCAAACAAGTATGTCCTTCTTTGATAAACATCACCTTTATAAAACTAATTTTATCAAAGGAAAACGAA CGTTATGGCAAAGAATGCATTGTGTTGAAACAGGCGCTCGCGCGTTCGCATGCAGAGCTCAAGGAAGCAAATGCA TCAAAACTTGAATCAGCTGATGGGAAGCTTGTCTTGGTGCGTTCATCAGCATCATTTTCAATATACCCCCAAATT AATTACTGCGTATAGGAACTCTCCAAACTCGAAGATACGATTAGTTGCGAAATCTGCACAAACCGTCTCTACACA CCCTACCTGTACGTTCCATGCATTGTTCCAAAAAAGGCGATGAAATTAACTGCATATATAAACAGCTTACCAGGT TGCGGACATACATTTTGTCTTTCATGTCTTCGTGACTGGTTTGGAATGACTCATGCGCAATTTCTACAAACAAAC CCTCATTGGAACCCCAATGCGCAGAATCAAAACATCTTACGCATCCGGAGTCTTCTTCGGCCCGAATATCTTGTT CACCCCCAAATTCAACACGAAATGTTGCATATACAACAGCCCCAGCCTCAATTTACATGTCCAACGTGTCGCAAA CGAGTTTACCAGCGCCCCGTCGAGGTTTATGCCCTCAAATCCCTTATAAGGATGAGTTTGAGTGCTAATGAAGCT GAGAAGGCGAGAATTCCACCAGACACAACTGTTGTTGAAAAGCGGCGCGGGCGCCTGGTTGTGGTTGATCCTTGG GATGGTTACTTTCCTAGAGAATAG |