Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|043470
Gene name
Locationscaffold_2:1258081..1259057
Strand-
Gene length (bp)976
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07106 TBPIP TBPIP/Hop2 winged helix domain 1.1E-16 18 79

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9HGK2|HOP2_SCHPO Homologous-pairing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=meu13 PE=1 SV=1 8 211 2.0E-27
sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana GN=HOP2 PE=1 SV=1 23 220 3.0E-22
sp|Q91ZY6|HOP2_RAT Homologous-pairing protein 2 homolog OS=Rattus norvegicus GN=Psmc3ip PE=1 SV=1 23 220 8.0E-19
sp|O35047|HOP2_MOUSE Homologous-pairing protein 2 homolog OS=Mus musculus GN=Psmc3ip PE=1 SV=1 23 220 4.0E-18
sp|Q9P2W1|HOP2_HUMAN Homologous-pairing protein 2 homolog OS=Homo sapiens GN=PSMC3IP PE=1 SV=1 23 220 2.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|Q9HGK2|HOP2_SCHPO Homologous-pairing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=meu13 PE=1 SV=1 8 211 2.0E-27
sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana GN=HOP2 PE=1 SV=1 23 220 3.0E-22
sp|Q91ZY6|HOP2_RAT Homologous-pairing protein 2 homolog OS=Rattus norvegicus GN=Psmc3ip PE=1 SV=1 23 220 8.0E-19
sp|O35047|HOP2_MOUSE Homologous-pairing protein 2 homolog OS=Mus musculus GN=Psmc3ip PE=1 SV=1 23 220 4.0E-18
sp|Q9P2W1|HOP2_HUMAN Homologous-pairing protein 2 homolog OS=Homo sapiens GN=PSMC3IP PE=1 SV=1 23 220 2.0E-17
sp|P53187|HOP2_YEAST Homologous-pairing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOP2 PE=1 SV=4 1 211 3.0E-10
sp|Q63ZL2|HOP2_XENLA Homologous-pairing protein 2 homolog OS=Xenopus laevis GN=psmc3ip PE=2 SV=1 23 213 1.0E-08
sp|Q54UM1|HOP2_DICDI Homologous-pairing protein 2 homolog OS=Dictyostelium discoideum GN=hop2 PE=3 SV=1 13 221 2.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 57 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|043470
MSSKTKSETKVAVLKGQEAEDKVLEYMKLMNRPFGAVDVAANLKGAVPKATTQKILLALAEKGELTLKTYGKTTF
FVVNQSKLDCLPAEEIAMLESDLKVVEEQNKALGVELKNASAELMKHKSCPTDAEIEVQIAQLTKKIEQARERLR
PLQQGAVTISSEDVAHVEKEWMLWRGEWVRRRKVFTEFWQLATDVLSPQDAKELGEDLGVEWDSVEHVALERGLA
KTALKRKRA*
Coding >AgabiH97|043470
ATGTCTTCAAAAACAAAGTCAGAAACAAAAGTTGCCGTTCTCAAAGGCCAGGAAGCCGAGGATAAGGTCCTCGAG
TACATGAAACTCATGAACCGTCCGTTCGGAGCGGTGGATGTCGCTGCTAACCTTAAGGGTGCCGTGCCCAAGGCG
ACTACACAGAAAATCCTCTTGGCTCTTGCAGAAAAGGGCGAGTTGACTCTGAAAACTTATGGCAAAACTACGTTC
TTCGTGGTCAATCAGTCCAAACTAGATTGCCTCCCCGCAGAAGAAATTGCGATGCTAGAAAGTGATCTGAAGGTC
GTCGAAGAGCAGAACAAGGCATTAGGAGTCGAGCTGAAAAATGCATCAGCTGAACTTATGAAGCATAAATCGTGC
CCTACGGACGCGGAAATCGAAGTTCAAATCGCTCAATTGACCAAGAAGATTGAGCAAGCTAGGGAACGTCTGAGA
CCGTTGCAACAAGGAGCAGTGACTATTTCGAGCGAGGACGTTGCGCATGTGGAAAAGGAATGGATGCTTTGGCGA
GGAGAGTGGGTTCGGCGGCGAAAAGTATTCACAGAATTCTGGCAGCTGGCAACGGACGTGCTTTCGCCGCAGGAC
GCAAAGGAGCTCGGGGAGGATCTGGGAGTGGAGTGGGACAGTGTTGAGCATGTGGCCCTTGAGCGAGGCCTGGCA
AAGACGGCGCTGAAGAGGAAGCGAGCTTGA
Transcript >AgabiH97|043470
ATGTCTTCAAAAACAAAGTCAGAAACAAAAGTTGCCGTTCTCAAAGGCCAGGAAGCCGAGGATAAGGTCCTCGAG
TACATGAAACTCATGAACCGTCCGTTCGGAGCGGTGGATGTCGCTGCTAACCTTAAGGGTGCCGTGCCCAAGGCG
ACTACACAGAAAATCCTCTTGGCTCTTGCAGAAAAGGGCGAGTTGACTCTGAAAACTTATGGCAAAACTACGTTC
TTCGTGGTCAATCAGTCCAAACTAGATTGCCTCCCCGCAGAAGAAATTGCGATGCTAGAAAGTGATCTGAAGGTC
GTCGAAGAGCAGAACAAGGCATTAGGAGTCGAGCTGAAAAATGCATCAGCTGAACTTATGAAGCATAAATCGTGC
CCTACGGACGCGGAAATCGAAGTTCAAATCGCTCAATTGACCAAGAAGATTGAGCAAGCTAGGGAACGTCTGAGA
CCGTTGCAACAAGGAGCAGTGACTATTTCGAGCGAGGACGTTGCGCATGTGGAAAAGGAATGGATGCTTTGGCGA
GGAGAGTGGGTTCGGCGGCGAAAAGTATTCACAGAATTCTGGCAGCTGGCAACGGACGTGCTTTCGCCGCAGGAC
GCAAAGGAGCTCGGGGAGGATCTGGGAGTGGAGTGGGACAGTGTTGAGCATGTGGCCCTTGAGCGAGGCCTGGCA
AAGACGGCGCTGAAGAGGAAGCGAGCTTGA
Gene >AgabiH97|043470
ATGTCTTCAAAAACAAAGTCAGAAACAAAAGTTGCCGTTCTCAAAGGCCAGGAAGCCGAGGATAAGGTCCTCGAG
TACATGAAACTCGTGATCTCCCACGCGTCTCCCTGTCTTCCAACTGGCTGACGACGCATATACTCAGATGAACCG
TCCGTTCGGAGCGGTGGATGTCGCTGCTAACCTTAAGGGTGCCGTGCCCAAGGCGACTACACAGAAAATCCTCTT
GGCTCTTGCAGAAAAGGGCGAGTTGACTCTGAAAACTTATGGTATATCCCCTGAGGATGGAATGTACGCGGCTTC
CTTTTGACGGGCACACAGGCAAAACTACGTTCTTCGTGGTCAATCAGTCCAAACTAGATTGCCTCCCCGCAGAAG
AAATTGCGATGCTAGAAAGTGATCTGAAGGTCGTCGAAGAGCAGAACAAGGCATTAGGAGTCGAGCTGAAAAATG
CATCAGCTGGTAGAAGATCAGCTGGAGCTTCTTTATGCGCTCGATCGCTGACGCTGAAACCAACCAGAACTTATG
AAGCATAAATCGTGCCCTACGGACGCGGAAATCGAAGTTCAAATCGCTCAATTGACCAAGAAGGTATTTGCAGAT
TGCGCGTCACATCAGTGCTACTACCCAGACACATAACATCATAGATTGAGCAAGCTAGGGAACGTCTGAGACCGT
TGCAACAAGGAGCAGTGACTATTTCGAGCGAGGACGTTGCGCATGTGGAAAAGGAATGGATGCTTTGGCGAGGAG
AGTGGGTTCGGCGGCGAAAAGTATTCACAGAGTACGAGTGACAGCAGAAAATGCGCAGTCAAGAAGCTGACGGTG
TTACAGATTCTGGCAGCTGGCAACGGACGTGCTTTCGCCGCAGGACGCAAAGGAGCTCGGGGAGGATCTGGGAGT
GGAGTGGGACAGTGTTGAGCATGTGGCCCTTGAGCGAGGCCTGGCAAAGACGGCGCTGAAGAGGAAGCGAGCTTG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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