© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|043320 |
| Gene name | |
| Location | scaffold_2:1215452..1217631 |
| Strand | - |
| Gene length (bp) | 2179 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00723 | Glyco_hydro_15 | Glycosyl hydrolases family 15 | 2.3E-90 | 36 | 450 |
| PF00686 | CBM_20 | Starch binding domain | 2.1E-27 | 482 | 569 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36914|AMYG_ASPOR | Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2 | 21 | 574 | 0.0E+00 |
| sp|D8Q9M3|AMYG_SCHCM | Glucoamylase ARB_02327-1 OS=Schizophyllum commune (strain H4-8 / FGSC 9210) GN=SCHCODRAFT_57589 PE=1 SV=1 | 1 | 574 | 0.0E+00 |
| sp|P14804|AMYG_NEUCR | Glucoamylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=gla-1 PE=1 SV=3 | 24 | 574 | 3.0E-176 |
| sp|P0DN29|AMYG_ARTBC | Glucoamylase ARB_02327-1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02327-1 PE=1 SV=1 | 1 | 574 | 3.0E-167 |
| sp|P22832|AMYG_ASPSH | Glucoamylase OS=Aspergillus shirousami GN=glaA PE=3 SV=1 | 20 | 489 | 4.0E-163 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36914|AMYG_ASPOR | Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2 | 21 | 574 | 0.0E+00 |
| sp|D8Q9M3|AMYG_SCHCM | Glucoamylase ARB_02327-1 OS=Schizophyllum commune (strain H4-8 / FGSC 9210) GN=SCHCODRAFT_57589 PE=1 SV=1 | 1 | 574 | 0.0E+00 |
| sp|P14804|AMYG_NEUCR | Glucoamylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=gla-1 PE=1 SV=3 | 24 | 574 | 3.0E-176 |
| sp|P0DN29|AMYG_ARTBC | Glucoamylase ARB_02327-1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02327-1 PE=1 SV=1 | 1 | 574 | 3.0E-167 |
| sp|P22832|AMYG_ASPSH | Glucoamylase OS=Aspergillus shirousami GN=glaA PE=3 SV=1 | 20 | 489 | 4.0E-163 |
| sp|P69328|AMYG_ASPNG | Glucoamylase OS=Aspergillus niger GN=GLAA PE=1 SV=1 | 20 | 477 | 4.0E-162 |
| sp|P69327|AMYG_ASPAW | Glucoamylase OS=Aspergillus awamori GN=GLAA PE=1 SV=1 | 20 | 477 | 4.0E-162 |
| sp|P23176|AMYG_ASPKA | Glucoamylase I OS=Aspergillus kawachii GN=gaI PE=1 SV=1 | 20 | 489 | 5.0E-162 |
| sp|Q03045|AMYG_AMORE | Glucoamylase P OS=Amorphotheca resinae GN=GAMP PE=1 SV=1 | 8 | 573 | 8.0E-162 |
| sp|P07683|AMYG_RHIOR | Glucoamylase 1 OS=Rhizopus oryzae PE=1 SV=2 | 23 | 456 | 5.0E-78 |
| sp|O60087|AMYG_SCHPO | Probable glucoamylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=meu17 PE=2 SV=1 | 14 | 457 | 1.0E-77 |
| sp|P42042|AMYG_BLAAD | Glucoamylase OS=Blastobotrys adeninivorans GN=GAA PE=3 SV=1 | 31 | 457 | 9.0E-71 |
| sp|I1BYW6|AMYD_RHIO9 | Glucoamylase amyD OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=amyD PE=1 SV=1 | 19 | 456 | 9.0E-71 |
| sp|P26989|AMYH_SACFI | Glucoamylase GLA1 OS=Saccharomycopsis fibuligera GN=GLA1 PE=3 SV=2 | 23 | 457 | 1.0E-59 |
| sp|P08017|AMYG_SACFI | Glucoamylase GLU1 OS=Saccharomycopsis fibuligera GN=GLU1 PE=1 SV=1 | 23 | 457 | 2.0E-57 |
| sp|P08019|AMYG_YEAST | Glucoamylase, intracellular sporulation-specific OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGA1 PE=3 SV=2 | 22 | 458 | 8.0E-49 |
| sp|P04065|AMYH_YEASX | Glucoamylase S1 OS=Saccharomyces cerevisiae GN=STA1 PE=3 SV=2 | 22 | 410 | 6.0E-41 |
| sp|P29760|AMYI_YEASX | Glucoamylase S2 OS=Saccharomyces cerevisiae GN=STA2 PE=3 SV=1 | 22 | 410 | 9.0E-41 |
| sp|P22998|AMY_STRVL | Alpha-amylase OS=Streptomyces violaceus GN=aml PE=2 SV=1 | 480 | 574 | 2.0E-20 |
| sp|P69327|AMYG_ASPAW | Glucoamylase OS=Aspergillus awamori GN=GLAA PE=1 SV=1 | 483 | 574 | 6.0E-18 |
| sp|P69328|AMYG_ASPNG | Glucoamylase OS=Aspergillus niger GN=GLAA PE=1 SV=1 | 483 | 574 | 6.0E-18 |
| sp|P09794|AMY_STRLM | Alpha-amylase OS=Streptomyces limosus GN=aml PE=3 SV=1 | 484 | 574 | 4.0E-17 |
| sp|P30270|AMY_STRGR | Alpha-amylase OS=Streptomyces griseus GN=amy PE=3 SV=1 | 484 | 574 | 4.0E-17 |
| sp|P09121|CDGT_BACS3 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 38-2) GN=cgt PE=1 SV=2 | 488 | 574 | 4.0E-15 |
| sp|P05618|CDGT_BACS0 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 1011) GN=cgt PE=1 SV=1 | 488 | 574 | 4.0E-15 |
| sp|O30565|CDGT_BREBE | Cyclomaltodextrin glucanotransferase OS=Brevibacillus brevis GN=cgt PE=3 SV=1 | 477 | 573 | 1.0E-14 |
| sp|P43379|CDGT2_BACCI | Cyclomaltodextrin glucanotransferase OS=Bacillus circulans GN=cgt PE=1 SV=1 | 477 | 574 | 8.0E-14 |
| sp|P17692|CDGT_BACS8 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain B1018) GN=cgt PE=1 SV=1 | 477 | 574 | 2.0E-13 |
| sp|P30921|CDGT_BAC11 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 17-1) GN=cgt PE=1 SV=1 | 477 | 574 | 5.0E-13 |
| sp|P31746|CDGT_BACS2 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 1-1) GN=cgt PE=1 SV=1 | 477 | 573 | 1.0E-12 |
| sp|P27036|CDGT_BACOH | Cyclomaltodextrin glucanotransferase OS=Bacillus ohbensis GN=cgt PE=3 SV=2 | 477 | 574 | 1.0E-12 |
| sp|P31747|CDGT_BACSS | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 6.6.3) GN=cgt PE=3 SV=1 | 488 | 574 | 1.0E-11 |
| sp|P31835|CDGT2_PAEMA | Cyclomaltodextrin glucanotransferase OS=Paenibacillus macerans PE=1 SV=1 | 483 | 574 | 2.0E-11 |
| sp|P30920|CDGT1_BACCI | Cyclomaltodextrin glucanotransferase OS=Bacillus circulans PE=1 SV=1 | 477 | 574 | 2.0E-11 |
| sp|P26827|CDGT_THETU | Cyclomaltodextrin glucanotransferase OS=Thermoanaerobacterium thermosulfurigenes GN=amyA PE=1 SV=2 | 488 | 574 | 3.0E-11 |
| sp|P04830|CDGT1_PAEMA | Cyclomaltodextrin glucanotransferase OS=Paenibacillus macerans GN=cgtM PE=1 SV=2 | 477 | 574 | 4.0E-11 |
| sp|P14014|CDGT_BACLI | Cyclomaltodextrin glucanotransferase OS=Bacillus licheniformis GN=cgtA PE=3 SV=1 | 477 | 574 | 5.0E-11 |
| sp|P29750|AMY_THECU | Alpha-amylase OS=Thermomonospora curvata GN=tam PE=1 SV=1 | 459 | 551 | 2.0E-08 |
| sp|P31797|CDGT_GEOSE | Cyclomaltodextrin glucanotransferase OS=Geobacillus stearothermophilus GN=cgt PE=1 SV=1 | 488 | 574 | 4.0E-08 |
| sp|P19584|AMYB_THETU | Thermophilic beta-amylase OS=Thermoanaerobacterium thermosulfurigenes PE=1 SV=1 | 480 | 574 | 4.0E-08 |
| sp|Q59005|Y1610_METJA | Uncharacterized glycosyl hydrolase MJ1610 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1610 PE=3 SV=1 | 55 | 448 | 9.0E-08 |
| sp|P19531|AMYM_GEOSE | Maltogenic alpha-amylase OS=Geobacillus stearothermophilus GN=amyM PE=1 SV=2 | 477 | 574 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:2001070 | starch binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0030247 | polysaccharide binding | No |
| GO:0030246 | carbohydrate binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1016 | 0.0908 | 0.9268 | 0.0803 | 0.0618 | 0.0047 | 0.3093 | 0.2046 | 0.1351 | 0.0041 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999487 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GH15 | 7.7E-74 | 48 | 450 |
| CBM20 | 6.3E-29 | 482 | 567 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 237.54 | 122.93 | 352.14 |
| Initials | Initials knots | 197.08 | 111.85 | 282.31 |
| Pileal_Stipeal_center | Stage I stipe center | 280.86 | 152.87 | 408.85 |
| Pileal_Stipeal_shell | Stage I stipe shell | 185.13 | 106.16 | 264.10 |
| DIF_stipe_center | Stage II stipe center | 257.05 | 142.36 | 371.74 |
| DIF_stipe_shell | Stage II stipe shell | 435.52 | 221.73 | 649.31 |
| DIF_stipe_skin | Stage II stipe skin | 369.11 | 191.85 | 546.36 |
| DIF_cap_skin | Stage II cap skin | 283.33 | 154.38 | 412.28 |
| DIF_cap_tissue | Stage II cap tissue | 312.40 | 164.88 | 459.93 |
| DIF_gill_tissue | Stage II gill tissue | 212.81 | 118.57 | 307.05 |
| YFB_stipe_center | Young fruiting body stipe center | 348.38 | 182.37 | 514.39 |
| YFB_stipe_shell | Young fruiting body stipe shell | 559.12 | 253.54 | 864.71 |
| YFB_stipe_skin | Young fruiting body stipe skin | 700.32 | 318.03 | 1082.62 |
| YFB_cap_skin | Young fruiting body cap skin | 360.32 | 188.99 | 531.65 |
| YFB_cap_tissue | Young fruiting body cap tissue | 758.85 | 315.90 | 1201.79 |
| YFB_gill_tissue | Young fruiting body gill tissue | 264.03 | 139.70 | 388.37 |
| YFB_veil | Young fruiting body veil | 206.37 | 116.12 | 296.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.839852 | no |
| Casing | YFB_stipe_center | 0.317425 | no |
| Casing | YFB_stipe_shell | 0.010412 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.258084 | no |
| Casing | YFB_cap_tissue | 0.001140 | yes |
| Casing | YFB_gill_tissue | 0.852643 | no |
| Casing | YFB_veil | 0.787297 | no |
| Casing | Initials | 0.683703 | no |
| Casing | Pileal_Stipeal_center | 0.735374 | no |
| Casing | Pileal_Stipeal_shell | 0.543190 | no |
| Casing | DIF_stipe_center | 0.893619 | no |
| Casing | DIF_stipe_shell | 0.074478 | no |
| Casing | DIF_stipe_skin | 0.223600 | no |
| Casing | DIF_cap_skin | 0.715816 | no |
| Casing | DIF_cap_tissue | 0.514137 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.123509 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.002525 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.094821 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_gill_tissue | 0.605386 | no |
| DIF_gill_tissue | YFB_veil | 0.958838 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.208910 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.042041 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.959887 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.030610 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.503521 | no |
| YFB_stipe_center | YFB_veil | 0.104432 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.670634 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.255805 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.546198 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.022892 | yes |
| YFB_stipe_shell | YFB_veil | 0.002951 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.052745 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.909444 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.003765 | yes |
| YFB_stipe_skin | YFB_veil | 0.000613 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.041603 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.430182 | no |
| YFB_cap_skin | YFB_veil | 0.083669 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.002084 | yes |
| YFB_cap_tissue | YFB_veil | 0.000613 | yes |
| YFB_gill_tissue | YFB_veil | 0.541537 | no |
| Initials | DIF_gill_tissue | 0.888030 | no |
| Initials | YFB_stipe_center | 0.067147 | no |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.049046 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.437934 | no |
| Initials | YFB_veil | 0.935843 | no |
| Initials | Pileal_Stipeal_center | 0.301178 | no |
| Initials | Pileal_Stipeal_shell | 0.908823 | no |
| Initials | DIF_stipe_center | 0.477432 | no |
| Initials | DIF_stipe_shell | 0.010728 | yes |
| Initials | DIF_stipe_skin | 0.035765 | yes |
| Initials | DIF_cap_skin | 0.279372 | no |
| Initials | DIF_cap_tissue | 0.146187 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.460023 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.625351 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.039390 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.006742 | yes |
| Pileal_Stipeal_center | YFB_cap_skin | 0.548976 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.003365 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.915760 | no |
| Pileal_Stipeal_center | YFB_veil | 0.392277 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.189390 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.868437 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.209955 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.495365 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.988778 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.839852 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.757537 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.034377 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.025205 | yes |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.292985 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.827384 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.324970 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.005671 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.017507 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.168934 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.079655 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.653430 | no |
| DIF_stipe_center | YFB_stipe_center | 0.426345 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.017783 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.002084 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.360018 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.002084 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.965214 | no |
| DIF_stipe_center | YFB_veil | 0.588640 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.108233 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.313162 | no |
| DIF_stipe_center | DIF_cap_skin | 0.853079 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.651386 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.020260 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.629215 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.599428 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.215960 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.695529 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.153551 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.141262 | no |
| DIF_stipe_shell | YFB_veil | 0.015242 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.744880 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.215044 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.393961 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.080179 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.925909 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.290161 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.065465 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.971494 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.051318 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.379207 | no |
| DIF_stipe_skin | YFB_veil | 0.063760 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.512002 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.730651 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.441846 | no |
| DIF_cap_skin | YFB_stipe_center | 0.644700 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.042260 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.007092 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.566602 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.003365 | yes |
| DIF_cap_skin | YFB_gill_tissue | 0.903062 | no |
| DIF_cap_skin | YFB_veil | 0.373177 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.856338 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.263495 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.844727 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.093175 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.018344 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.779917 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.008791 | yes |
| DIF_cap_tissue | YFB_gill_tissue | 0.719785 | no |
| DIF_cap_tissue | YFB_veil | 0.211586 | no |
| Orthofinder run ID | 1 |
| Orthogroup | 857 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Agaricus bisporus var bisporus H39 | AgabiH39|043320 |
| Agaricus bisporus var bisporus H97 | AgabiH97|043320 (this protein) |
| Rhodonia placenta FPRL280 | RhoplFPRL280|160_2 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|043320 MRISSAFLWTSLALSWGAYAQSSSVDAYLAAESPIAKAGLLANIGPSGSKSAGAKAGIVIASPSHSDPDYLFTWT RDASLVFAVIIDQYTLGLDTSLRSHIDNFVSSQKIIQQVSNPSGTISTGGLGEPKFNIDETAFTGSWGRPQRDGP ALRANALITWSNHLLKQNNASYVTGTLWPIIKLDLDYIKNTWNQSSFDLWEEVSSSSFFTTAVQHRSLRQGAALA TAIRETSVVADYTKQADNLLCFMQSYWNTAGYMTANTGGGRTGKDANTVLASIHTFDAAAGCDAATFQPCSDRAL ANLVAYVNAFRSIYAINSGVPSNIGIATGRYAEDVYFGGNPWYLTTLAVAEQLYDALIVWKNQGSITVTNLSKPF FSLFSSGISTGTFSSSSSTFNTLITGVQNYADSFVNVVAKHTPSGGGLAEQYSRNDGNPLSAFDLTWSYASLLTA DGARNGVVPASWGAKGLTVPGTCSGNSGPTAHVTFNVNAETVFGENIFVTGSVGALANWSPDNAIALNADNYPIW SVAIDIPASTNVEYKYIRKFNGGVTWESDPNRRFTSPASGSSTLNDVWR* |
| Coding | >AgabiH97|043320 ATGCGTATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAGCCTATGCACAGTCCAGTTCTGTT GATGCATATCTAGCCGCTGAATCCCCGATAGCCAAAGCAGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCAGGTGCTAAAGCAGGAATAGTAATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAATACACGTTGGGTCTGGATACTTCTCTGCGAAGTCAT ATCGATAATTTTGTTTCCTCACAAAAGATTATACAACAAGTGTCTAATCCATCGGGAACGATTAGTACCGGTGGC CTCGGTGAACCAAAGTTTAACATCGATGAAACGGCTTTCACTGGTTCATGGGGTCGTCCTCAACGAGATGGTCCT GCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAATCACCTTCTTAAACAAAACAACGCGTCCTACGTCACTGGC ACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAATACCTGGAATCAGTCTAGTTTCGACTTGTGG GAAGAAGTATCATCCTCGTCTTTCTTCACCACTGCCGTGCAACACCGTTCACTCCGCCAAGGCGCAGCATTGGCC ACTGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCATGCAGTCA TACTGGAATACAGCAGGTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTC GCTAGTATCCACACCTTCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTG GCCAATCTCGTCGCATACGTTAACGCCTTCCGAAGCATATATGCCATCAACTCGGGTGTTCCATCAAACATCGGT ATTGCGACTGGAAGATATGCAGAGGATGTGTATTTCGGTGGGAATCCATGGTACTTGACGACTTTGGCGGTTGCG GAACAACTCTATGATGCTTTGATCGTCTGGAAAAACCAAGGCTCAATCACAGTCACGAATCTATCCAAGCCATTC TTTTCACTCTTCTCGTCTGGCATTTCTACCGGCACTTTTTCTTCTTCTTCCAGCACCTTCAATACTCTGATTACA GGAGTCCAAAACTATGCCGATAGCTTCGTGAATGTCGTTGCGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAG CAGTACAGCCGCAATGACGGGAATCCTCTCAGTGCATTTGATTTGACTTGGAGCTATGCTTCCCTCTTAACGGCT GATGGTGCCAGAAATGGTGTTGTTCCTGCGAGTTGGGGTGCCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGG AACAGTGGACCCACTGCTCATGTCACTTTCAATGTTAATGCTGAAACGGTGTTCGGAGAGAATATCTTTGTGACT GGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCTCAATGCAGATAATTATCCCATTTGG AGTGTGGCCATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACGGCGGAGTTACC TGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAATGATGTTTGGCGATAG |
| Transcript | >AgabiH97|043320 ATGCGTATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAGCCTATGCACAGTCCAGTTCTGTT GATGCATATCTAGCCGCTGAATCCCCGATAGCCAAAGCAGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCAGGTGCTAAAGCAGGAATAGTAATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAATACACGTTGGGTCTGGATACTTCTCTGCGAAGTCAT ATCGATAATTTTGTTTCCTCACAAAAGATTATACAACAAGTGTCTAATCCATCGGGAACGATTAGTACCGGTGGC CTCGGTGAACCAAAGTTTAACATCGATGAAACGGCTTTCACTGGTTCATGGGGTCGTCCTCAACGAGATGGTCCT GCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAATCACCTTCTTAAACAAAACAACGCGTCCTACGTCACTGGC ACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAATACCTGGAATCAGTCTAGTTTCGACTTGTGG GAAGAAGTATCATCCTCGTCTTTCTTCACCACTGCCGTGCAACACCGTTCACTCCGCCAAGGCGCAGCATTGGCC ACTGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCATGCAGTCA TACTGGAATACAGCAGGTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTC GCTAGTATCCACACCTTCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTG GCCAATCTCGTCGCATACGTTAACGCCTTCCGAAGCATATATGCCATCAACTCGGGTGTTCCATCAAACATCGGT ATTGCGACTGGAAGATATGCAGAGGATGTGTATTTCGGTGGGAATCCATGGTACTTGACGACTTTGGCGGTTGCG GAACAACTCTATGATGCTTTGATCGTCTGGAAAAACCAAGGCTCAATCACAGTCACGAATCTATCCAAGCCATTC TTTTCACTCTTCTCGTCTGGCATTTCTACCGGCACTTTTTCTTCTTCTTCCAGCACCTTCAATACTCTGATTACA GGAGTCCAAAACTATGCCGATAGCTTCGTGAATGTCGTTGCGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAG CAGTACAGCCGCAATGACGGGAATCCTCTCAGTGCATTTGATTTGACTTGGAGCTATGCTTCCCTCTTAACGGCT GATGGTGCCAGAAATGGTGTTGTTCCTGCGAGTTGGGGTGCCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGG AACAGTGGACCCACTGCTCATGTCACTTTCAATGTTAATGCTGAAACGGTGTTCGGAGAGAATATCTTTGTGACT GGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCTCAATGCAGATAATTATCCCATTTGG AGTGTGGCCATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACGGCGGAGTTACC TGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAATGATGTTTGGCGATAG |
| Gene | >AgabiH97|043320 ATGCGTATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAGCCTATGCACAGTCCAGTTCTGTT GATGCATATCTAGCCGCTGAATCCCCGATAGCCAAAGCAGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCAGGTGCTAAAGCAGGAATAGTAATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAGTAAGTCATCGTACTACGACTATCAAAATTGCAAACT ATTGCCAACTAATCAAACATTCAGATACACGTTGGGTCTGGATACTTCTCTGCGAAGTCATATCGATAATTTTGT TTCCTCACAAAAGATTATACAACAAGTGTCTAATCCATCGGGAACGATTAGTACCGGTGGCCTCGGTGAACCAAA GTTTAACATCGATGAAACGGCTTTCACTGGTTCATGGGGGTAAGTCGGCCAATTGCACGAACTTTCTGTAATGCT GAATCTTGATTTGATTTTTAGTCGTCCTCAACGAGGTTCGTTCTGATTGTTGCGTGTCTGAACAGCGCCTGTACT GAGAATGATGTCTTAGATGGTCCTGCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAATCACCTTCTTAAACAA AACAACGCGTCCTACGTCACTGGCACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAATACCTGG AATCAGTCTAGGTACGTGTTTCATTCTAATGCTTTAATTGTTGGCTCTAAACGTTGAATTAGTTTCGACTTGTGG GAAGAAGTATCATCCTCGTCTTTCTTCACCACTGCCGTGCAACACCGTTCACTCCGCCAAGGCGCAGCATTGGCC ACTGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCATGCAGGTT TGTTTATACTTCGTTGAGTGCAAAGTGAAGCATACACTGATCAGTTTTTATCCTAGTCATACTGGAATACAGCAG GTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTCGCTAGTATCCACACCT TCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTGGCCAATCTCGTCGCAT ACGTTAACGCCTTCCGAAGCATATATGCCATCAACTCGGGTGTTCCATCAAACATCGGTATTGCGACTGGAAGAT ATGCAGAGGATGTGTATTTCGGTGGGAATGTATGTTTCTCTCTGAAATTACATGTTTGTCGTGGCTAAATCGTCT CAAAGCCATGGTACTTGACGACTTTGGCGGTTGCGGAACAACTCTATGATGCTTTGATCGTCTGGAAAAACCAAG GCTCAATCACAGTCACGAATCTATCCAAGCCATTCTTTTCACTCTTCTCGTCTGGCATTTCTACCGGCACTTTTT CTTCTTCTTCCAGCACCTTCAATACTCTGATTACAGGAGTCCAAAACTATGCCGATAGCTTCGTGAATGTCGTTG CGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAGCAGTACAGCCGCAATGACGGGAATCCTCTCAGTGCATTTG ATTTGACTTGGAGCTATGCTTCCCTCTTAACGGCTGATGGTGCCAGAAATGGTGTTGTTCCTGCGAGTTGGGGTG CCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGGAACAGTGGACCCACTGCTCATGTCACTTTCAATGTTAATG CTGAAACGGTGTTCGGAGGTACCTTTTTTCCCTCTCACTTTTACGAACAGGAATGACTCATGACATATGGAAACA GAGAATATCTTTGTGACTGGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCTCAATGCA GATAATTATCCCATTTGGAGTGGTAAGTCCTCAATCCCTCTCCTGCCTTTCGGTGATCCTTTTCGCTGAAGATGT TCCTCTAGTGGCCATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACGGCGGAGT TACCTGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAATGATGTTTGGCG ATAG |