Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|042430
Gene name
Location	scaffold_2:991616..992985
Strand	-
Gene length (bp)	1369
Transcript length (bp)	1152
Coding sequence length (bp)	1152
Protein length (aa)	384

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 32	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	32.63	18.59	46.67
Initials	Initials knots	54.58	32.11	77.05
Pileal_Stipeal_center	Stage I stipe center	59.57	35.81	83.33
Pileal_Stipeal_shell	Stage I stipe shell	48.98	29.00	68.97
DIF_stipe_center	Stage II stipe center	81.22	48.86	113.58
DIF_stipe_shell	Stage II stipe shell	89.57	54.27	124.88
DIF_stipe_skin	Stage II stipe skin	75.52	45.49	105.56
DIF_cap_skin	Stage II cap skin	36.23	20.84	51.62
DIF_cap_tissue	Stage II cap tissue	43.31	25.25	61.37
DIF_gill_tissue	Stage II gill tissue	49.15	28.88	69.41
YFB_stipe_center	Young fruiting body stipe center	99.89	60.89	138.89
YFB_stipe_shell	Young fruiting body stipe shell	112.45	68.24	156.66
YFB_stipe_skin	Young fruiting body stipe skin	86.46	52.38	120.55
YFB_cap_skin	Young fruiting body cap skin	32.37	18.26	46.48
YFB_cap_tissue	Young fruiting body cap tissue	32.03	17.48	46.57
YFB_gill_tissue	Young fruiting body gill tissue	39.01	22.53	55.50
YFB_veil	Young fruiting body veil	40.76	23.72	57.81

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.193760	no
Casing	YFB_stipe_center	0.000613	yes
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.000613	yes
Casing	YFB_cap_skin	0.988778	no
Casing	YFB_cap_tissue	0.974310	no
Casing	YFB_gill_tissue	0.675895	no
Casing	YFB_veil	0.567159	no
Casing	Initials	0.079123	no
Casing	Pileal_Stipeal_center	0.029890	yes
Casing	Pileal_Stipeal_shell	0.199497	no
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.000613	yes
Casing	DIF_cap_skin	0.836219	no
Casing	DIF_cap_tissue	0.429326	no
DIF_gill_tissue	YFB_stipe_center	0.006032	yes
DIF_gill_tissue	YFB_stipe_shell	0.001140	yes
DIF_gill_tissue	YFB_stipe_skin	0.034837	yes
DIF_gill_tissue	YFB_cap_skin	0.178332	no
DIF_gill_tissue	YFB_cap_tissue	0.170490	no
DIF_gill_tissue	YFB_gill_tissue	0.541827	no
DIF_gill_tissue	YFB_veil	0.638685	no
YFB_stipe_center	YFB_stipe_shell	0.790147	no
YFB_stipe_center	YFB_stipe_skin	0.727181	no
YFB_stipe_center	YFB_cap_skin	0.000613	yes
YFB_stipe_center	YFB_cap_tissue	0.000613	yes
YFB_stipe_center	YFB_gill_tissue	0.000613	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.426697	no
YFB_stipe_shell	YFB_cap_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_tissue	0.000613	yes
YFB_stipe_shell	YFB_gill_tissue	0.000613	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.000613	yes
YFB_stipe_skin	YFB_cap_tissue	0.000613	yes
YFB_stipe_skin	YFB_gill_tissue	0.002951	yes
YFB_stipe_skin	YFB_veil	0.002525	yes
YFB_cap_skin	YFB_cap_tissue	0.985568	no
YFB_cap_skin	YFB_gill_tissue	0.655875	no
YFB_cap_skin	YFB_veil	0.545593	no
YFB_cap_tissue	YFB_gill_tissue	0.634330	no
YFB_cap_tissue	YFB_veil	0.525771	no
YFB_gill_tissue	YFB_veil	0.938138	no
Initials	DIF_gill_tissue	0.831965	no
Initials	YFB_stipe_center	0.017783	yes
Initials	YFB_stipe_shell	0.003765	yes
Initials	YFB_stipe_skin	0.099273	no
Initials	YFB_cap_skin	0.070681	no
Initials	YFB_cap_tissue	0.070499	no
Initials	YFB_gill_tissue	0.310296	no
Initials	YFB_veil	0.389072	no
Initials	Pileal_Stipeal_center	0.858572	no
Initials	Pileal_Stipeal_shell	0.820525	no
Initials	DIF_stipe_center	0.179706	no
Initials	DIF_stipe_shell	0.066584	no
Initials	DIF_stipe_skin	0.305777	no
Initials	DIF_cap_skin	0.185943	no
Initials	DIF_cap_tissue	0.533750	no
Pileal_Stipeal_center	DIF_gill_tissue	0.626027	no
Pileal_Stipeal_center	YFB_stipe_center	0.053965	no
Pileal_Stipeal_center	YFB_stipe_shell	0.015242	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.205647	no
Pileal_Stipeal_center	YFB_cap_skin	0.026461	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.025711	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.160121	no
Pileal_Stipeal_center	YFB_veil	0.204693	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.613191	no
Pileal_Stipeal_center	DIF_stipe_center	0.330474	no
Pileal_Stipeal_center	DIF_stipe_shell	0.151524	no
Pileal_Stipeal_center	DIF_stipe_skin	0.496427	no
Pileal_Stipeal_center	DIF_cap_skin	0.081927	no
Pileal_Stipeal_center	DIF_cap_tissue	0.328878	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.994825	no
Pileal_Stipeal_shell	YFB_stipe_center	0.005671	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.030610	yes
Pileal_Stipeal_shell	YFB_cap_skin	0.181569	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.172307	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.544686	no
Pileal_Stipeal_shell	YFB_veil	0.644890	no
Pileal_Stipeal_shell	DIF_stipe_center	0.063376	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.020790	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.129827	no
Pileal_Stipeal_shell	DIF_cap_skin	0.378147	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.786123	no
DIF_stipe_center	DIF_gill_tissue	0.065833	no
DIF_stipe_center	YFB_stipe_center	0.561721	no
DIF_stipe_center	YFB_stipe_shell	0.289094	no
DIF_stipe_center	YFB_stipe_skin	0.896775	no
DIF_stipe_center	YFB_cap_skin	0.001625	yes
DIF_stipe_center	YFB_cap_tissue	0.000613	yes
DIF_stipe_center	YFB_gill_tissue	0.005302	yes
DIF_stipe_center	YFB_veil	0.006032	yes
DIF_stipe_center	DIF_stipe_shell	0.828166	no
DIF_stipe_center	DIF_stipe_skin	0.878652	no
DIF_stipe_center	DIF_cap_skin	0.002084	yes
DIF_stipe_center	DIF_cap_tissue	0.014956	yes
DIF_stipe_shell	DIF_gill_tissue	0.020523	yes
DIF_stipe_shell	YFB_stipe_center	0.807243	no
DIF_stipe_shell	YFB_stipe_shell	0.518516	no
DIF_stipe_shell	YFB_stipe_skin	0.945756	no
DIF_stipe_shell	YFB_cap_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_tissue	0.000613	yes
DIF_stipe_shell	YFB_gill_tissue	0.002084	yes
DIF_stipe_shell	YFB_veil	0.002525	yes
DIF_stipe_shell	DIF_stipe_skin	0.656751	no
DIF_stipe_shell	DIF_cap_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_tissue	0.004928	yes
DIF_stipe_skin	DIF_gill_tissue	0.135445	no
DIF_stipe_skin	YFB_stipe_center	0.380934	no
DIF_stipe_skin	YFB_stipe_shell	0.161964	no
DIF_stipe_skin	YFB_stipe_skin	0.747302	no
DIF_stipe_skin	YFB_cap_skin	0.002084	yes
DIF_stipe_skin	YFB_cap_tissue	0.000613	yes
DIF_stipe_skin	YFB_gill_tissue	0.011968	yes
DIF_stipe_skin	YFB_veil	0.017226	yes
DIF_stipe_skin	DIF_cap_skin	0.004160	yes
DIF_stipe_skin	DIF_cap_tissue	0.034377	yes
DIF_cap_skin	DIF_gill_tissue	0.372405	no
DIF_cap_skin	YFB_stipe_center	0.000613	yes
DIF_cap_skin	YFB_stipe_shell	0.000613	yes
DIF_cap_skin	YFB_stipe_skin	0.000613	yes
DIF_cap_skin	YFB_cap_skin	0.822132	no
DIF_cap_skin	YFB_cap_tissue	0.801202	no
DIF_cap_skin	YFB_gill_tissue	0.888941	no
DIF_cap_skin	YFB_veil	0.802114	no
DIF_cap_skin	DIF_cap_tissue	0.665936	no
DIF_cap_tissue	DIF_gill_tissue	0.783326	no
DIF_cap_tissue	YFB_stipe_center	0.000613	yes
DIF_cap_tissue	YFB_stipe_shell	0.000613	yes
DIF_cap_tissue	YFB_stipe_skin	0.004928	yes
DIF_cap_tissue	YFB_cap_skin	0.408674	no
DIF_cap_tissue	YFB_cap_tissue	0.386814	no
DIF_cap_tissue	YFB_gill_tissue	0.827234	no
DIF_cap_tissue	YFB_veil	0.907044	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|042430 MLHYVLLIVHRCLRGISYLRILLFELWQLLAVHLRDECVYGQVECSETECDMIVVRGELEAHRKEKHGKDTKQES VEATEPDQAQPSCPTPTTDKPQQKEVELLMEQNFLLRHRVEMLEGAMQVMKREMNAVKSALGPWYRMPTTRPTYS ARARTSLRPEGEEVAAEITNGNTGPSLDAANSLGAGEGNTVQARATHTRRRSLPLSGEMMENGGDGIREGDPFAG YFPTIGDFGGLLSHHGAFAQQQQQGGGPGGLQINPGAVTRVAPLDLGTTLIGTLEGLRESVVGVAAGIDSLGRRS EIALANESLRLGEEVVSMRGAVHGLRMQIHAMMMERNAQITGREEGMGAGSSWMGGGMNFGGQNASGPRMYSYGG PPPNITKL*
Coding	>AgabiH97|042430 ATGCTCCATTATGTCCTATTGATCGTTCACCGTTGTCTGAGAGGGATCTCGTACCTTCGGATCCTATTATTCGAA CTCTGGCAGCTGTTGGCTGTTCATCTCAGAGATGAATGTGTGTATGGACAAGTGGAATGTAGTGAGACAGAGTGT GATATGATTGTTGTGAGGGGTGAGTTGGAGGCACATCGAAAGGAGAAACATGGTAAGGATACGAAACAAGAATCT GTTGAAGCTACAGAACCAGATCAAGCACAACCTTCATGTCCAACGCCAACCACTGATAAGCCACAGCAGAAAGAA GTGGAATTGCTAATGGAACAAAACTTTCTTTTGCGACATCGAGTGGAAATGCTTGAAGGTGCTATGCAGGTTATG AAGAGGGAGATGAATGCTGTGAAGAGTGCGCTAGGCCCGTGGTACCGTATGCCTACAACACGCCCGACCTATTCC GCCCGAGCTCGTACCTCGCTACGGCCAGAAGGGGAAGAAGTAGCAGCTGAAATTACAAATGGGAATACCGGCCCA TCACTCGATGCGGCAAATTCTTTGGGCGCGGGCGAGGGCAATACTGTGCAGGCGAGGGCGACACACACGCGTAGA CGATCATTGCCTTTGTCGGGAGAAATGATGGAGAATGGCGGGGATGGGATCCGTGAAGGTGATCCCTTTGCTGGA TACTTTCCTACGATCGGGGACTTTGGTGGATTACTGTCGCATCATGGGGCCTTTGCGCAACAGCAGCAGCAGGGA GGAGGACCTGGTGGGCTTCAAATTAACCCGGGGGCTGTGACTAGGGTGGCGCCTTTGGATTTGGGGACAACTCTG ATTGGGACATTGGAGGGACTACGAGAAAGCGTGGTTGGAGTTGCTGCGGGAATAGACTCACTAGGAAGGAGAAGC GAAATTGCGTTGGCTAATGAAAGCTTACGGTTGGGAGAAGAGGTAGTTTCTATGCGGGGGGCTGTTCATGGGTTG AGGATGCAGATCCATGCGATGATGATGGAGAGAAATGCGCAGATTACGGGGAGAGAGGAGGGGATGGGTGCCGGA AGCTCGTGGATGGGTGGGGGGATGAATTTTGGTGGACAGAATGCCTCTGGACCGAGGATGTATTCTTATGGAGGA CCACCGCCGAACATCACAAAACTATAA
Transcript	>AgabiH97|042430 ATGCTCCATTATGTCCTATTGATCGTTCACCGTTGTCTGAGAGGGATCTCGTACCTTCGGATCCTATTATTCGAA CTCTGGCAGCTGTTGGCTGTTCATCTCAGAGATGAATGTGTGTATGGACAAGTGGAATGTAGTGAGACAGAGTGT GATATGATTGTTGTGAGGGGTGAGTTGGAGGCACATCGAAAGGAGAAACATGGTAAGGATACGAAACAAGAATCT GTTGAAGCTACAGAACCAGATCAAGCACAACCTTCATGTCCAACGCCAACCACTGATAAGCCACAGCAGAAAGAA GTGGAATTGCTAATGGAACAAAACTTTCTTTTGCGACATCGAGTGGAAATGCTTGAAGGTGCTATGCAGGTTATG AAGAGGGAGATGAATGCTGTGAAGAGTGCGCTAGGCCCGTGGTACCGTATGCCTACAACACGCCCGACCTATTCC GCCCGAGCTCGTACCTCGCTACGGCCAGAAGGGGAAGAAGTAGCAGCTGAAATTACAAATGGGAATACCGGCCCA TCACTCGATGCGGCAAATTCTTTGGGCGCGGGCGAGGGCAATACTGTGCAGGCGAGGGCGACACACACGCGTAGA CGATCATTGCCTTTGTCGGGAGAAATGATGGAGAATGGCGGGGATGGGATCCGTGAAGGTGATCCCTTTGCTGGA TACTTTCCTACGATCGGGGACTTTGGTGGATTACTGTCGCATCATGGGGCCTTTGCGCAACAGCAGCAGCAGGGA GGAGGACCTGGTGGGCTTCAAATTAACCCGGGGGCTGTGACTAGGGTGGCGCCTTTGGATTTGGGGACAACTCTG ATTGGGACATTGGAGGGACTACGAGAAAGCGTGGTTGGAGTTGCTGCGGGAATAGACTCACTAGGAAGGAGAAGC GAAATTGCGTTGGCTAATGAAAGCTTACGGTTGGGAGAAGAGGTAGTTTCTATGCGGGGGGCTGTTCATGGGTTG AGGATGCAGATCCATGCGATGATGATGGAGAGAAATGCGCAGATTACGGGGAGAGAGGAGGGGATGGGTGCCGGA AGCTCGTGGATGGGTGGGGGGATGAATTTTGGTGGACAGAATGCCTCTGGACCGAGGATGTATTCTTATGGAGGA CCACCGCCGAACATCACAAAACTATAA
Gene	>AgabiH97|042430 ATGCTCCATTATGTCCTATTGATCGTTCACCGTTGTCTGAGAGGGATCTCGTACCTTCGGATCCTATTATTCGAA CTGTAAGTGTTGTGTATATCCCAAGGTTTTATGATTTATGGGGTTTTCTGTAGCTGGTAGAAGAACTCGCGGTGG AATGTGTGCATAAATCTTCGGGATGTGAATATGTTTGTCAAAGGCAGCTGTTGGCTGTTCATCTCAGAGATGAAT GTGTGTATGGACAAGTGGAATGTAGTGAGACAGAGTGTGATATGATTGTTGTGAGGGGTGAGTTGGAGGCACATC GAAAGGAGAAACATGGTAAGGATACGAAACAAGAATCTGTGCGGGGTTACATTTGATTTTATTCATCGAGTTTAC TCATGACATGGGTTTAGGTTGAAGCTACAGAACCAGATCAAGCACAACCTTCATGTCCAACGCCAACCACTGATA AGCCACAGCAGAAAGAAGTGGAATTGCTAATGGAACAAAACTTTCTTTTGCGACATCGAGTGGAAATGCTTGAAG GTGCTATGCAGGTTATGAAGAGGGAGATGAATGCTGTGAAGAGTGCGCTAGGCCCGTGGTACCGTATGCCTACAA CACGCCCGACCTATTCCGCCCGAGCTCGTACCTCGCTACGGCCAGAAGGGGAAGAAGTAGCAGCTGAAATTACAA ATGGGAATACCGGCCCATCACTCGATGCGGCAAATTCTTTGGGCGCGGGCGAGGGCAATACTGTGCAGGCGAGGG CGACACACACGCGTAGACGATCATTGCCTTTGTCGGGAGAAATGATGGAGAATGGCGGGGATGGGATCCGTGAAG GTGATCCCTTTGCTGGATACTTTCCTACGATCGGGGACTTTGGTGGATTACTGTCGCATCATGGGGCCTTTGCGC AACAGCAGCAGCAGGGAGGAGGACCTGGTGGGCTTCAAATTAACCCGGGGGCTGTGACTAGGGTGGCGCCTTTGG ATTTGGGGACAACTCTGATTGGGACATTGGAGGGACTACGAGAAAGCGTGGTTGGAGTTGCTGCGGGAATAGACT CACTAGGAAGGAGAAGCGAAATTGCGTTGGCTAATGAAAGCTTACGGTTGGGAGAAGAGGTAGTTTCTATGCGGG GGGCTGTTCATGGGTTGAGGATGCAGGTGGGTTTGCATACGTCTTTCAGCTGATCGGACCACTGATAAGCATTTA GATCCATGCGATGATGATGGAGAGAAATGCGCAGATTACGGGGAGAGAGGAGGGGATGGGTGCCGGAAGCTCGTG GATGGGTGGGGGGATGAATTTTGGTGGACAGAATGCCTCTGGACCGAGGATGTATTCTTATGGAGGACCACCGCC GAACATCACAAAACTATAA