Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|042030
Gene name
Locationscaffold_2:890183..892052
Strand+
Gene length (bp)1869
Transcript length (bp)1476
Coding sequence length (bp)1476
Protein length (aa) 492

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00856 SET SET domain 2.2E-13 31 289
PF09273 Rubis-subs-bind Rubisco LSMT substrate-binding 5.1E-11 343 451

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5ZK17|SETD6_CHICK N-lysine methyltransferase SETD6 OS=Gallus gallus GN=SETD6 PE=2 SV=2 4 459 6.0E-30
sp|Q9CWY3|SETD6_MOUSE N-lysine methyltransferase SETD6 OS=Mus musculus GN=Setd6 PE=1 SV=1 4 456 4.0E-29
sp|Q803K4|SETD6_DANRE N-lysine methyltransferase setd6 OS=Danio rerio GN=setd6 PE=2 SV=1 33 459 3.0E-27
sp|E1BI64|SETD6_BOVIN N-lysine methyltransferase SETD6 OS=Bos taurus GN=SETD6 PE=2 SV=1 1 456 7.0E-26
sp|Q9P6L2|RKM4_SCHPO Ribosomal lysine N-methyltransferase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set13 PE=3 SV=2 3 459 2.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|Q5ZK17|SETD6_CHICK N-lysine methyltransferase SETD6 OS=Gallus gallus GN=SETD6 PE=2 SV=2 4 459 6.0E-30
sp|Q9CWY3|SETD6_MOUSE N-lysine methyltransferase SETD6 OS=Mus musculus GN=Setd6 PE=1 SV=1 4 456 4.0E-29
sp|Q803K4|SETD6_DANRE N-lysine methyltransferase setd6 OS=Danio rerio GN=setd6 PE=2 SV=1 33 459 3.0E-27
sp|E1BI64|SETD6_BOVIN N-lysine methyltransferase SETD6 OS=Bos taurus GN=SETD6 PE=2 SV=1 1 456 7.0E-26
sp|Q9P6L2|RKM4_SCHPO Ribosomal lysine N-methyltransferase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set13 PE=3 SV=2 3 459 2.0E-24
sp|D3ZSK5|SETD6_RAT N-lysine methyltransferase SETD6 OS=Rattus norvegicus GN=Setd6 PE=3 SV=1 4 456 3.0E-24
sp|A4QNG5|SETD6_XENTR N-lysine methyltransferase setd6 OS=Xenopus tropicalis GN=setd6 PE=2 SV=1 1 459 8.0E-24
sp|Q12504|RKM4_YEAST Ribosomal lysine N-methyltransferase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RKM4 PE=1 SV=1 4 380 1.0E-23
sp|C0H8I2|SETD6_SALSA N-lysine methyltransferase setd6 OS=Salmo salar GN=setd6 PE=2 SV=1 1 459 2.0E-22
sp|Q6INM2|SETD6_XENLA N-lysine methyltransferase setd6 OS=Xenopus laevis GN=setd6 PE=2 SV=1 4 459 3.0E-22
sp|Q8TBK2|SETD6_HUMAN N-lysine methyltransferase SETD6 OS=Homo sapiens GN=SETD6 PE=1 SV=2 30 456 4.0E-21
sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1 3 454 7.0E-09
sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1 3 454 3.0E-08
sp|Q9XI84|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1 3 181 7.0E-08
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|042030
MGTFIQWFQRKGAYFDAESVGIIGFPPSEGGRGAVALRDIPNGHTLFSIPRTLTISTRTCSLPTKFGLEAWRKAQ
LHQGWVGLILCLMWETAAGSSSKWAGYLDILPNRFDTPMFWTEYDLLELKGTSVVEKLGKVDAQADYNEKLLPAV
KSRPDLFLPEHLSTHYTLERYHIMGSRILSRSFIVEKWNEDEDENEAANTSLGSAMDVEPSRNEETPGVPMETED
NSDDNDDDDDDDEEASDVAMVPMADILNARYQTENAKLFHEKDELKMVTTKPIRSGEQIWNTYGDLPNAELLRRY
GHVDFLSLPSEGHGNPGDVVEIKADLIISAVSSIPEAVKDDEAKERIDWWLEEGGEDIFILDYEYDLPPVMISFV
KLLLLPQADWEKAREKSKPPKSKLEGILYDILISTLEKRLAEYPTTIETDKALLTNDTPLNKKNAIIVRLGEKEI
LHGILQKLKVLKEAEGRSSAGASTKRKGGASGPTKVKRIRR*
Coding >AgabiH97|042030
ATGGGGACCTTCATCCAATGGTTTCAACGTAAAGGTGCATATTTTGACGCCGAATCCGTGGGCATCATTGGATTT
CCCCCTTCTGAGGGTGGTCGTGGTGCCGTTGCACTGAGAGATATTCCAAATGGACATACACTTTTCTCAATTCCT
AGAACCCTAACAATTTCCACACGTACATGTAGTCTCCCCACAAAATTTGGTCTCGAAGCTTGGCGAAAAGCCCAA
CTCCATCAAGGGTGGGTCGGTCTGATTTTGTGTTTGATGTGGGAGACTGCGGCTGGGTCGTCTTCCAAGTGGGCG
GGTTATTTAGATATTTTGCCGAACCGTTTCGATACACCTATGTTCTGGACTGAATACGACCTCCTAGAATTAAAA
GGTACCTCTGTGGTAGAAAAACTCGGCAAGGTAGATGCACAAGCAGACTACAACGAGAAACTTTTACCAGCGGTC
AAATCAAGACCAGACTTGTTTCTTCCTGAACATCTATCAACACATTATACCCTCGAGAGGTATCATATCATGGGT
AGTCGTATCCTTTCACGAAGTTTTATTGTGGAAAAGTGGAATGAAGACGAAGATGAAAACGAAGCTGCCAATACA
AGTCTAGGCAGTGCTATGGATGTCGAGCCAAGTCGCAATGAAGAAACACCAGGCGTTCCAATGGAAACTGAGGAC
AATTCGGACGACAATGACGACGACGACGATGATGATGAAGAGGCTTCCGATGTGGCCATGGTACCAATGGCTGAT
ATACTGAATGCAAGATATCAGACAGAAAATGCAAAACTGTTTCACGAAAAGGACGAGCTAAAGATGGTGACCACA
AAGCCGATCAGAAGTGGCGAACAAATTTGGAATACCTACGGCGATCTACCAAACGCAGAGCTGCTGCGGCGATAT
GGGCACGTCGATTTTCTATCTCTTCCTTCTGAAGGTCATGGGAATCCCGGAGATGTCGTTGAAATCAAGGCCGAT
CTCATTATATCCGCAGTATCGTCAATACCAGAAGCTGTCAAGGATGACGAAGCAAAGGAAAGGATCGATTGGTGG
CTAGAAGAGGGTGGTGAAGATATCTTCATTCTGGACTACGAATATGATTTGCCACCGGTCATGATCTCGTTTGTA
AAACTCCTGCTTCTGCCCCAAGCTGATTGGGAGAAAGCTCGAGAAAAGTCAAAACCACCCAAGTCAAAGCTCGAG
GGTATTCTGTATGACATCTTGATCTCGACTCTTGAAAAACGCTTGGCCGAGTACCCTACCACAATAGAGACGGAT
AAGGCACTTTTGACGAACGACACCCCTTTGAATAAGAAGAATGCCATCATCGTCCGCCTTGGTGAAAAAGAGATT
TTACATGGAATCTTGCAAAAATTAAAAGTTCTGAAAGAGGCTGAGGGTAGAAGCAGTGCTGGAGCGTCCACAAAA
AGAAAAGGTGGGGCGAGCGGCCCCACCAAGGTGAAAAGGATAAGGCGATGA
Transcript >AgabiH97|042030
ATGGGGACCTTCATCCAATGGTTTCAACGTAAAGGTGCATATTTTGACGCCGAATCCGTGGGCATCATTGGATTT
CCCCCTTCTGAGGGTGGTCGTGGTGCCGTTGCACTGAGAGATATTCCAAATGGACATACACTTTTCTCAATTCCT
AGAACCCTAACAATTTCCACACGTACATGTAGTCTCCCCACAAAATTTGGTCTCGAAGCTTGGCGAAAAGCCCAA
CTCCATCAAGGGTGGGTCGGTCTGATTTTGTGTTTGATGTGGGAGACTGCGGCTGGGTCGTCTTCCAAGTGGGCG
GGTTATTTAGATATTTTGCCGAACCGTTTCGATACACCTATGTTCTGGACTGAATACGACCTCCTAGAATTAAAA
GGTACCTCTGTGGTAGAAAAACTCGGCAAGGTAGATGCACAAGCAGACTACAACGAGAAACTTTTACCAGCGGTC
AAATCAAGACCAGACTTGTTTCTTCCTGAACATCTATCAACACATTATACCCTCGAGAGGTATCATATCATGGGT
AGTCGTATCCTTTCACGAAGTTTTATTGTGGAAAAGTGGAATGAAGACGAAGATGAAAACGAAGCTGCCAATACA
AGTCTAGGCAGTGCTATGGATGTCGAGCCAAGTCGCAATGAAGAAACACCAGGCGTTCCAATGGAAACTGAGGAC
AATTCGGACGACAATGACGACGACGACGATGATGATGAAGAGGCTTCCGATGTGGCCATGGTACCAATGGCTGAT
ATACTGAATGCAAGATATCAGACAGAAAATGCAAAACTGTTTCACGAAAAGGACGAGCTAAAGATGGTGACCACA
AAGCCGATCAGAAGTGGCGAACAAATTTGGAATACCTACGGCGATCTACCAAACGCAGAGCTGCTGCGGCGATAT
GGGCACGTCGATTTTCTATCTCTTCCTTCTGAAGGTCATGGGAATCCCGGAGATGTCGTTGAAATCAAGGCCGAT
CTCATTATATCCGCAGTATCGTCAATACCAGAAGCTGTCAAGGATGACGAAGCAAAGGAAAGGATCGATTGGTGG
CTAGAAGAGGGTGGTGAAGATATCTTCATTCTGGACTACGAATATGATTTGCCACCGGTCATGATCTCGTTTGTA
AAACTCCTGCTTCTGCCCCAAGCTGATTGGGAGAAAGCTCGAGAAAAGTCAAAACCACCCAAGTCAAAGCTCGAG
GGTATTCTGTATGACATCTTGATCTCGACTCTTGAAAAACGCTTGGCCGAGTACCCTACCACAATAGAGACGGAT
AAGGCACTTTTGACGAACGACACCCCTTTGAATAAGAAGAATGCCATCATCGTCCGCCTTGGTGAAAAAGAGATT
TTACATGGAATCTTGCAAAAATTAAAAGTTCTGAAAGAGGCTGAGGGTAGAAGCAGTGCTGGAGCGTCCACAAAA
AGAAAAGGTGGGGCGAGCGGCCCCACCAAGGTGAAAAGGATAAGGCGATGA
Gene >AgabiH97|042030
ATGGGGACCTTCATCCAATGGTTTCAACGTAAAGGTGCATATTTTGACGCCGAATCCGTGGGCATCATTGGATTT
CCCCCTTCTGAGGGTGGTCGTGGTGCCGTTGCACTGAGAGATATTCCAGTGCGTGATTAATCATTTCTCAATAAA
TTCGAATTAAGAATTCTCAGAATGGACATACACTTTTCTCAATTCCTAGAACCCTAACAATTTCCACACGTACAT
GTAGTCTCCCCACAAAATTTGGTCTCGAAGCTTGGCGAAAAGCCCAACTCCATCAAGGGTGGGTCGGTCTGATTT
TGTGTTTGATGTGGGAGACTGCGGCTGGGTCGTCTTCCAAGTGGGCGGGTTATTTAGGTATGTCTCGCCATCTAT
GTAATAACTCGCCGGCCAAGTAACTTATATATAAAAACTGATAGATATTTTGCCGAACCGTTTCGATACACCTAT
GTTCTGGACTGAATACGACCTCCTAGAATTAAAAGGTACCTCTGTGGTAGGTCGGTTTGTTCAAAAATTTCGACG
AGTAAATGAGTATAGTCTTACCTTCATCTGCAGAAAAACTCGGCAAGGTAGATGCACAAGCAGACTACAACGAGA
AACTTTTACCAGCGGTCAAATCAAGACCAGACTTGTTTCTTCCTGAACATCTATCAACACATTATACCCTCGAGA
GGTATCATATCATGGGTAGTCGTATCCTTTCACGAAGTTTTATTGTGGAAAAGTGGAATGAAGACGAAGATGAAA
ACGAAGCTGCCAATACAAGTCTAGGCAGTGCTATGGATGTCGAGCCAAGTCGCAATGAAGAAACACCAGGCGTTC
CAATGGAAACTGAGGACAATTCGGACGACAATGACGACGACGACGATGATGATGAAGAGGCTTCCGATGTGGCCA
TGGTACCAATGGCTGATATACTGAATGCAAGATATCAGACAGAAAATGTCAGTGGTTGACGTTCATGGCACGGAC
GGATGAGAATTCAATTTGTCTCTACCAGGCAAAACTGTTTCACGAAAAGGACGAGCTAAAGATGGTGACCACAAA
GCCGATCAGAAGTGGCGAACAAATTGTCAGTTTTTCCGTAATCAATCGCTTGTGTGCTGCCATTCTAACTTTTTC
TCAATTAAGTGGAATACCTACGGCGATCTACCAAACGCAGAGCTGCTGCGGCGATATGGGCACGTCGATTTTCTA
TCTCTTCCTTCTGAAGGTCATGGGAATCCCGGAGATGTCGTTGAAATCAAGGCCGATCTCATTATATCCGCAGTA
TCGTCAATACCAGAAGCTGTCAAGGATGACGAAGCAAAGGAAAGGATCGATTGGTGGCTAGAAGAGGGTGGTGAA
GAGTAAGTGTTGCAAATATTGATTTTGTTCTCGAATCGTGATTCTGATTTTTTTGGTCTTGTAGTATCTTCATTC
TGGACTACGAATATGATTTGCCACCGGTCATGATCTCGTTTGTAAAACTCCTGCTTCTGCCCCAAGCTGATTGGG
AGAAAGCTCGAGAAAAGTCAAAACCACCCAAGTCAAAGCTCGAGGGTATTCTGTATGACATCTTGATCTCGACTC
TTGAAAAACGCTTGGCCGAGTACCCTACCACAATAGAGGTAACAATAGTACACTCCCTTTTCTCCGAGACTAATC
GCACCATCTTAGACGGATAAGGCACTTTTGACGAACGACACCCCTTTGAATAAGAAGAATGCCATCATCGTCCGC
CTTGGTGAAAAAGAGATTTTACATGGAATCTTGCAAAAATTAAAAGTTCTGAAAGAGGCTGAGGGTAGAAGCAGT
GCTGGAGCGTCCACAAAAAGAAAAGGTGGGGCGAGCGGCCCCACCAAGGTGAAAAGGATAAGGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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