© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|041740 |
| Gene name | |
| Location | scaffold_2:823137..824916 |
| Strand | - |
| Gene length (bp) | 1779 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02353 | CMAS | Mycolic acid cyclopropane synthetase | 3.7E-29 | 67 | 269 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 4.8E-14 | 126 | 219 |
| PF13847 | Methyltransf_31 | Methyltransferase domain | 1.1E-12 | 121 | 223 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 5.0E-12 | 127 | 219 |
| PF08242 | Methyltransf_12 | Methyltransferase domain | 3.0E-08 | 127 | 219 |
| PF05175 | MTS | Methyltransferase small domain | 2.0E-08 | 124 | 197 |
| PF13489 | Methyltransf_23 | Methyltransferase domain | 2.4E-07 | 120 | 219 |
| PF03848 | TehB | Tellurite resistance protein TehB | 4.2E-06 | 125 | 206 |
| PF02390 | Methyltransf_4 | Putative methyltransferase | 6.8E-06 | 125 | 184 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5C9L6|CNMT_THLFG | (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | 17 | 302 | 3.0E-56 |
| sp|Q7XB08|CNMT_PAPSO | (S)-coclaurine N-methyltransferase OS=Papaver somniferum GN=CNMT PE=1 SV=1 | 12 | 280 | 2.0E-49 |
| sp|C3SBS8|TNMT_ESCCA | (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1 | 12 | 287 | 2.0E-47 |
| sp|Q108P1|TNMT_PAPSO | (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1 | 12 | 306 | 9.0E-47 |
| sp|C3SBU5|TNMT1_PAPBR | (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1 | 12 | 306 | 1.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5C9L6|CNMT_THLFG | (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | 17 | 302 | 3.0E-56 |
| sp|Q7XB08|CNMT_PAPSO | (S)-coclaurine N-methyltransferase OS=Papaver somniferum GN=CNMT PE=1 SV=1 | 12 | 280 | 2.0E-49 |
| sp|C3SBS8|TNMT_ESCCA | (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1 | 12 | 287 | 2.0E-47 |
| sp|Q108P1|TNMT_PAPSO | (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1 | 12 | 306 | 9.0E-47 |
| sp|C3SBU5|TNMT1_PAPBR | (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1 | 12 | 306 | 1.0E-45 |
| sp|C3SBU4|TNMT2_PAPBR | Probable (S)-tetrahydroprotoberberine N-methyltransferase 2 OS=Papaver bracteatum PE=2 SV=1 | 12 | 287 | 3.0E-45 |
| sp|C3SBW0|PNMT_THLFG | Pavine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | 12 | 287 | 4.0E-42 |
| sp|P0A9H7|CFA_ECOLI | Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | 71 | 266 | 3.0E-19 |
| sp|P0A9H8|CFA_ECOL6 | Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | 71 | 266 | 3.0E-19 |
| sp|P31049|FAMT_PSEPU | Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | 67 | 206 | 7.0E-15 |
| sp|P9WPB6|CMAS1_MYCTO | Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=cmaA1 PE=3 SV=1 | 66 | 211 | 5.0E-14 |
| sp|A5U866|CMAS1_MYCTA | Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | 66 | 211 | 5.0E-14 |
| sp|P9WPB7|CMAS1_MYCTU | Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=cmaA1 PE=1 SV=1 | 66 | 211 | 5.0E-14 |
| sp|O69687|FAMT_MYCTU | Probable fatty acid methyltransferase Rv3720 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv3720 PE=1 SV=4 | 67 | 220 | 7.0E-14 |
| sp|Q5APD4|C9MT_CANAL | Sphingolipid C9-methyltransferase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MTS1 PE=1 SV=1 | 73 | 261 | 1.0E-13 |
| sp|Q49807|CMAS2_MYCLE | Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | 66 | 265 | 6.0E-13 |
| sp|C4R7Z3|C9MT_PICPG | Sphingolipid C9-methyltransferase OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=PAS_chr4_0465 PE=1 SV=1 | 61 | 214 | 2.0E-11 |
| sp|I1RNL0|C9MT2_GIBZE | Sphingolipid C9-methyltransferase 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MT2 PE=3 SV=1 | 61 | 236 | 6.0E-11 |
| sp|I1RJD6|C9MT1_GIBZE | Sphingolipid C9-methyltransferase 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MT1 PE=3 SV=1 | 85 | 204 | 8.0E-11 |
| sp|P0CH91|MMAA3_MYCTU | Methoxy mycolic acid synthase MmaA3 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmaA3 PE=1 SV=1 | 57 | 203 | 1.0E-10 |
| sp|Q7U1K0|MMAA3_MYCBO | Methoxy mycolic acid synthase MmaA3 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaB PE=1 SV=1 | 57 | 203 | 1.0E-10 |
| sp|A5U028|MMAA3_MYCTA | Methoxy mycolic acid synthase MmaA3 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA3 PE=1 SV=1 | 57 | 203 | 1.0E-10 |
| sp|Q6MX39|UMAA_MYCTU | S-adenosylmethionine-dependent methyltransferase UmaA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=umaA PE=1 SV=1 | 74 | 274 | 2.0E-10 |
| sp|P9WPB3|CMAS3_MYCTU | Cyclopropane mycolic acid synthase 3 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=pcaA PE=1 SV=1 | 66 | 233 | 3.0E-10 |
| sp|P9WPB2|CMAS3_MYCTO | Cyclopropane mycolic acid synthase 3 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=pcaA PE=3 SV=1 | 66 | 233 | 3.0E-10 |
| sp|P9WPB5|CMAS2_MYCTU | Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=cmaA2 PE=1 SV=1 | 66 | 273 | 6.0E-10 |
| sp|P9WPB4|CMAS2_MYCTO | Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=cmaA2 PE=3 SV=1 | 66 | 273 | 6.0E-10 |
| sp|P0A5P1|CMAS2_MYCBO | Cyclopropane mycolic acid synthase 2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaA2 PE=3 SV=1 | 66 | 273 | 6.0E-10 |
| sp|Q79FX6|MMAA2_MYCTU | Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmaA2 PE=1 SV=1 | 71 | 206 | 8.0E-10 |
| sp|A5U029|MMAA2_MYCTA | Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1 | 71 | 206 | 8.0E-10 |
| sp|Q7U1J9|MMAA2_MYCBO | Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1 | 71 | 206 | 9.0E-10 |
| sp|Q79FX8|MMAA4_MYCTU | Hydroxymycolate synthase MmaA4 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmaA4 PE=1 SV=1 | 53 | 213 | 1.0E-09 |
| sp|A5U027|MMAA4_MYCTA | Hydroxymycolate synthase MmaA4 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA4 PE=1 SV=1 | 53 | 213 | 1.0E-09 |
| sp|Q7U1K1|MMAA4_MYCBO | Hydroxymycolate synthase MmaA4 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaA PE=1 SV=1 | 53 | 213 | 2.0E-09 |
| sp|P9WPB1|MMAA1_MYCTU | Mycolic acid methyltransferase MmaA1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmaA1 PE=1 SV=1 | 70 | 266 | 9.0E-07 |
| sp|P9WPB0|MMAA1_MYCTO | Mycolic acid methyltransferase MmaA1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mmaA1 PE=3 SV=1 | 70 | 266 | 9.0E-07 |
| sp|A5U030|MMAA1_MYCTA | Mycolic acid methyltransferase MmaA1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA1 PE=1 SV=1 | 70 | 266 | 9.0E-07 |
| sp|P0A5Q1|MMAA1_MYCBO | Mycolic acid methyltransferase MmaA1 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaD PE=3 SV=1 | 70 | 266 | 9.0E-07 |
| sp|Q482G8|UBIG_COLP3 | Ubiquinone biosynthesis O-methyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ubiG PE=3 SV=1 | 124 | 219 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0006400 | tRNA modification | Yes |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0140101 | catalytic activity, acting on a tRNA | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0016740 | transferase activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009987 | cellular process | No |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0016423 | tRNA (guanine) methyltransferase activity | No |
| GO:0008173 | RNA methyltransferase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008175 | tRNA methyltransferase activity | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0009451 | RNA modification | No |
| GO:0043170 | macromolecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 45.49 | 25.15 | 65.84 |
| Initials | Initials knots | 48.71 | 28.04 | 69.37 |
| Pileal_Stipeal_center | Stage I stipe center | 51.99 | 29.83 | 74.15 |
| Pileal_Stipeal_shell | Stage I stipe shell | 55.87 | 32.52 | 79.21 |
| DIF_stipe_center | Stage II stipe center | 43.41 | 24.52 | 62.30 |
| DIF_stipe_shell | Stage II stipe shell | 33.32 | 18.30 | 48.33 |
| DIF_stipe_skin | Stage II stipe skin | 40.16 | 22.40 | 57.92 |
| DIF_cap_skin | Stage II cap skin | 37.60 | 20.83 | 54.38 |
| DIF_cap_tissue | Stage II cap tissue | 43.88 | 24.69 | 63.06 |
| DIF_gill_tissue | Stage II gill tissue | 57.97 | 33.87 | 82.08 |
| YFB_stipe_center | Young fruiting body stipe center | 31.34 | 16.48 | 46.20 |
| YFB_stipe_shell | Young fruiting body stipe shell | 19.67 | 10.13 | 29.22 |
| YFB_stipe_skin | Young fruiting body stipe skin | 37.53 | 20.99 | 54.07 |
| YFB_cap_skin | Young fruiting body cap skin | 47.10 | 27.01 | 67.20 |
| YFB_cap_tissue | Young fruiting body cap tissue | 49.34 | 28.35 | 70.33 |
| YFB_gill_tissue | Young fruiting body gill tissue | 45.36 | 25.59 | 65.13 |
| YFB_veil | Young fruiting body veil | 53.20 | 30.78 | 75.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.524039 | no |
| Casing | YFB_stipe_center | 0.294057 | no |
| Casing | YFB_stipe_shell | 0.003365 | yes |
| Casing | YFB_stipe_skin | 0.651486 | no |
| Casing | YFB_cap_skin | 0.951852 | no |
| Casing | YFB_cap_tissue | 0.880358 | no |
| Casing | YFB_gill_tissue | 0.995729 | no |
| Casing | YFB_veil | 0.731782 | no |
| Casing | Initials | 0.900614 | no |
| Casing | Pileal_Stipeal_center | 0.778999 | no |
| Casing | Pileal_Stipeal_shell | 0.620893 | no |
| Casing | DIF_stipe_center | 0.937154 | no |
| Casing | DIF_stipe_shell | 0.394112 | no |
| Casing | DIF_stipe_skin | 0.796829 | no |
| Casing | DIF_cap_skin | 0.665197 | no |
| Casing | DIF_cap_tissue | 0.951032 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.041386 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.151916 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.595830 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.702051 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.512242 | no |
| DIF_gill_tissue | YFB_veil | 0.865693 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.188530 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.690086 | no |
| YFB_stipe_center | YFB_cap_skin | 0.226490 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.160121 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.294348 | no |
| YFB_stipe_center | YFB_veil | 0.087755 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.033906 | yes |
| YFB_stipe_shell | YFB_cap_skin | 0.001140 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.002525 | yes |
| YFB_stipe_shell | YFB_veil | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.561375 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.449718 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.654742 | no |
| YFB_stipe_skin | YFB_veil | 0.297681 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.935080 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.950133 | no |
| YFB_cap_skin | YFB_veil | 0.799248 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.873302 | no |
| YFB_cap_tissue | YFB_veil | 0.887498 | no |
| YFB_gill_tissue | YFB_veil | 0.721901 | no |
| Initials | DIF_gill_tissue | 0.671178 | no |
| Initials | YFB_stipe_center | 0.181451 | no |
| Initials | YFB_stipe_shell | 0.002084 | yes |
| Initials | YFB_stipe_skin | 0.480884 | no |
| Initials | YFB_cap_skin | 0.952669 | no |
| Initials | YFB_cap_tissue | 0.981535 | no |
| Initials | YFB_gill_tissue | 0.896851 | no |
| Initials | YFB_veil | 0.865353 | no |
| Initials | Pileal_Stipeal_center | 0.905155 | no |
| Initials | Pileal_Stipeal_shell | 0.764935 | no |
| Initials | DIF_stipe_center | 0.813187 | no |
| Initials | DIF_stipe_shell | 0.251000 | no |
| Initials | DIF_stipe_skin | 0.636136 | no |
| Initials | DIF_cap_skin | 0.499611 | no |
| Initials | DIF_cap_tissue | 0.832530 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.817043 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.109778 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.001140 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.338690 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.843759 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.926541 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.769686 | no |
| Pileal_Stipeal_center | YFB_veil | 0.969427 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.892575 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.669691 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.155171 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.482180 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.359432 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.697569 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.944426 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.056561 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.205305 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.689494 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.788091 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.606017 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.930230 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.499674 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.082633 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.322969 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.222818 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.525830 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.416582 | no |
| DIF_stipe_center | YFB_stipe_center | 0.381564 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.009446 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.753853 | no |
| DIF_stipe_center | YFB_cap_skin | 0.878716 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.786022 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.941497 | no |
| DIF_stipe_center | YFB_veil | 0.623771 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.493720 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.885577 | no |
| DIF_stipe_center | DIF_cap_skin | 0.763931 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.985291 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.058542 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.919692 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.115346 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.810051 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.315328 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.230239 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.402915 | no |
| DIF_stipe_shell | YFB_veil | 0.129397 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.662953 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.812589 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.470794 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.256120 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.541657 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.021056 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.899960 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.717852 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.608765 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.801172 | no |
| DIF_stipe_skin | YFB_veil | 0.434560 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.905688 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.863795 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.170490 | no |
| DIF_cap_skin | YFB_stipe_center | 0.695484 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.046117 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.996882 | no |
| DIF_cap_skin | YFB_cap_skin | 0.577149 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.467739 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.667935 | no |
| DIF_cap_skin | YFB_veil | 0.316230 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.744180 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.444210 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.364099 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.007092 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.729278 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.895720 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.807659 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.956200 | no |
| DIF_cap_tissue | YFB_veil | 0.647125 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|041740 MDFILQNGYNLLDRGLVPDFVLRRVIRLLCHGRLREIDLGSFEANHAAKMQWIEDVKARAVIADVPAKANEQHYE VSTKFMLSTLGPHAKYSSCLYPTGDETLAEAEECMLESYCWKAQLRDGIEILDLGCGWGSLSLFLAKKYPNSNIT GLSNSATQKSYIDSTAKERGLTNIKIITADVNTFDFENPKKFDRILSVEMFEHMKNYQALFQKISTWLRSTKETT EIDDPALLFVHIFCHKSTPYHFVEDDGWMAKNFFSGGTMPSHDLFTYFQDDLTLMKNIAKKGCRSLNRTPLRRVA RLKRAEKPSTGSVTRMGSRTLSL* |
| Coding | >AgabiH97|041740 ATGGATTTCATTCTACAAAACGGGTACAACTTATTGGATAGGGGACTGGTACCGGATTTTGTTCTACGGCGTGTC ATTCGACTTCTTTGCCATGGGCGCCTCCGCGAGATTGATCTTGGTTCCTTTGAGGCCAACCATGCTGCTAAAATG CAATGGATCGAAGATGTGAAAGCCCGTGCGGTAATTGCAGACGTACCCGCCAAAGCCAACGAACAACATTACGAG GTTTCAACCAAGTTTATGCTGTCGACTTTGGGTCCTCATGCCAAATACTCATCATGTCTCTACCCGACTGGAGAT GAAACCCTGGCAGAAGCAGAAGAATGTATGCTCGAAAGTTACTGCTGGAAAGCTCAGCTAAGAGATGGGATAGAA ATCCTCGACCTTGGATGTGGATGGGGGAGTCTTTCTCTTTTCTTAGCCAAGAAATATCCCAATTCGAATATCACT GGTCTTTCAAACTCGGCGACGCAGAAATCATATATCGATTCGACGGCTAAAGAACGGGGATTGACGAATATAAAG ATTATCACCGCAGATGTCAATACGTTTGATTTTGAAAATCCCAAAAAGTTCGACCGCATTTTGTCTGTTGAGATG TTTGAACATATGAAGAACTATCAAGCACTTTTCCAGAAAATATCTACCTGGCTCCGGTCGACTAAAGAGACTACA GAAATAGACGACCCTGCACTCTTATTTGTTCATATCTTCTGCCACAAATCTACACCTTACCATTTCGTCGAGGAT GACGGTTGGATGGCCAAGAACTTTTTCTCAGGCGGAACAATGCCTTCACACGATCTTTTCACTTATTTCCAAGAT GATCTGACGTTAATGAAGAACATAGCAAAGAAGGGTTGCAGGAGCTTGAACAGGACGCCGTTGCGAAGGGTAGCT CGGCTGAAGAGGGCAGAAAAGCCTTCTACAGGTTCCGTGACAAGAATGGGGAGTCGGACATTATCTCTTTAA |
| Transcript | >AgabiH97|041740 ATGGATTTCATTCTACAAAACGGGTACAACTTATTGGATAGGGGACTGGTACCGGATTTTGTTCTACGGCGTGTC ATTCGACTTCTTTGCCATGGGCGCCTCCGCGAGATTGATCTTGGTTCCTTTGAGGCCAACCATGCTGCTAAAATG CAATGGATCGAAGATGTGAAAGCCCGTGCGGTAATTGCAGACGTACCCGCCAAAGCCAACGAACAACATTACGAG GTTTCAACCAAGTTTATGCTGTCGACTTTGGGTCCTCATGCCAAATACTCATCATGTCTCTACCCGACTGGAGAT GAAACCCTGGCAGAAGCAGAAGAATGTATGCTCGAAAGTTACTGCTGGAAAGCTCAGCTAAGAGATGGGATAGAA ATCCTCGACCTTGGATGTGGATGGGGGAGTCTTTCTCTTTTCTTAGCCAAGAAATATCCCAATTCGAATATCACT GGTCTTTCAAACTCGGCGACGCAGAAATCATATATCGATTCGACGGCTAAAGAACGGGGATTGACGAATATAAAG ATTATCACCGCAGATGTCAATACGTTTGATTTTGAAAATCCCAAAAAGTTCGACCGCATTTTGTCTGTTGAGATG TTTGAACATATGAAGAACTATCAAGCACTTTTCCAGAAAATATCTACCTGGCTCCGGTCGACTAAAGAGACTACA GAAATAGACGACCCTGCACTCTTATTTGTTCATATCTTCTGCCACAAATCTACACCTTACCATTTCGTCGAGGAT GACGGTTGGATGGCCAAGAACTTTTTCTCAGGCGGAACAATGCCTTCACACGATCTTTTCACTTATTTCCAAGAT GATCTGACGTTAATGAAGAACATAGCAAAGAAGGGTTGCAGGAGCTTGAACAGGACGCCGTTGCGAAGGGTAGCT CGGCTGAAGAGGGCAGAAAAGCCTTCTACAGGTTCCGTGACAAGAATGGGGAGTCGGACATTATCTCTTTAA |
| Gene | >AgabiH97|041740 ATGGATTTCATTCTACAAAACGGGTACAACTTATTGGATAGGGTCTGTCATGACACAAGTCCGTATACCTCGTCT GACACGATGCAACGCAGGGACTGGTACCGGATTTTGTTCTACGGCGTGTCATTCGACTTCTTTGCCATGGGCGCC TCCGCGAGATTGATCTTGGTTCCTTTGAGGCCAACCATGCTGCTAAAATGCAATGGATCGAAGATGTGAAAGCCC GTGCGGTAATTGCAGACGTACCCGCCAAAGCCAACGAACAACATTACGAGGTGTGTCCAGGTCAACGTCTAACAA CCGTTCGTGCCTGGTTAAACAAATCTAGGTTTCAACCAAGTTTATGCTGTCGACTTTGGGTCCTCATGCCAAATA CTCATCATGTCTCTACCCGACTGGAGATGAAACCCTGGCAGAAGCAGAAGAATGTATGCTCGAAAGTTACTGCTG GAAAGCTCAGCTAAGAGATGGGATAGAAATCCTCGACCTTGGATGTGGTATGACTACGTTTATTTCTCAAACTCA GGGTTGTGATGGTAACGAGGATTACAATAAAAGGATGGGGGAGTCTTTCTCTTTTCTTAGCCAAGGTTCGTAGTG CGGAACATCATCGGCATTAGAGTTGCGCACGCTTACTTTGGCTTTTCATCAGAAATATCCCAATTCGAATATCAC TGGTCTTTCAAACTCGGCGACGCAGAAATCATATATCGATTCGACGGCTAAAGAACGGGGATTGACGAATATAAA GGTATCGGAACCAATATCTATCGTTAGCCATGACTAACAACCTAATAGATTATCACCGCAGATGTCAATACGTTT GATTTTGAAAATCCCAAAAAGTAAGCGACGCCGCCTAAAATTGACTCAACCACACTCTGAAGTAATTCAAAGGTT CGACCGCATTTTGTCTGTTGAGGTAAGTAGACTTTCACGTATTCTATATCCATCTGTCAACATGACTCCACTGTT GGGCATCATGACGCAGATGTTTGAACATATGAAGAACTATCAAGCACTTTTCCAGAAAATATCTACCTGGCTCCG GTCGACTAAAGAGACTACAGAAATAGACGACCCTGCACTCTTATTTGTTCATATCTTCTGCCACAAATCTACACC TTACCATTTCGTCGAGGATGACGGTTGGATGGCCAAGAACTTTTTCTCAGGTGACTTCCATCATTATTCAACTGT TTCATCTGAAGTGAAGGATTCAAATCTTTCGTCAATTACATACTACTCACTTAGGCGGAACAATGCCTTCACACG ATCTTTTCGTGAGTACCATTGATTGTAACTCCCCCCTTAACAACACGAAGTATTGATCAAACGTCCGTTGTTTAG ACTTATTTCCAAGATGATCTGACGTTAATGAAGAGTTGGTTTATTTCTGGCACCAACTATTCCAGAACATGCGAA GATTGGCTGAAGACTCAAGATAGACATAGCAAAGGTGTCCAACAACCCCTCAATCATCTCAATTCCCACTAACGT TTGCCTGCCCGAAATAAAGAAGGGTTGCAGGAGCTTGAACAGGACGCCGTTGCGAAGGGTAGCTCGGCTGAAGAG GGCAGAAAAGCCTTCTACAGGTTAGCCTTTTTCGTTCCAATGTCGAGCTAAATGACAACGTAATGGCAGGTTCCG TGTATTTTATATGGCTTGTTCAGAGCTGTTTAACCTGAACGGAGGACAAGAGTATGTGGTCATATGTTTAGCCAA CGTAACTGATTCTTACAATCTGGCCAGATGGGGAGTCGGACATTATCTCTTTAA |