Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|041480
Gene name
Locationscaffold_2:764019..765338
Strand-
Gene length (bp)1319
Transcript length (bp)1029
Coding sequence length (bp)1029
Protein length (aa) 343

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00106 adh_short short chain dehydrogenase 1.8E-20 28 174
PF13561 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 1.4E-15 34 157
PF08659 KR KR domain 7.2E-05 29 119

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 11 240 1.0E-23
sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 5 293 1.0E-22
sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 11 328 4.0E-22
sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 11 301 7.0E-22
sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 5 250 7.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 11 240 1.0E-23
sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 5 293 1.0E-22
sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 11 328 4.0E-22
sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 11 301 7.0E-22
sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 5 250 7.0E-22
sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 11 328 8.0E-22
sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 22 335 8.0E-22
sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 22 248 8.0E-22
sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 22 250 1.0E-21
sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 11 310 2.0E-20
sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 4 301 1.0E-19
sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1 9 314 1.0E-19
sp|O74959|YJCD_SCHPO Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1 24 321 1.0E-19
sp|Q9VLU5|WWOX_DROME WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 24 303 5.0E-19
sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 25 301 9.0E-19
sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1 11 301 1.0E-18
sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 24 250 2.0E-18
sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=1 SV=2 22 248 2.0E-17
sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1 24 297 5.0E-17
sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2 27 294 3.0E-14
sp|Q8VBZ0|DHRSX_MOUSE Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2 28 325 2.0E-12
sp|Q92247|BLI4_NEUCR Putative oxidoreductase bli-4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bli-4 PE=1 SV=1 24 245 5.0E-11
sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 29 314 1.0E-10
sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 29 278 2.0E-10
sp|P35320|OXIR_STRLI Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1 24 248 5.0E-10
sp|Q03326|OXIR_STRAT Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1 24 248 2.0E-09
sp|Q8K354|CBR3_MOUSE Carbonyl reductase [NADPH] 3 OS=Mus musculus GN=Cbr3 PE=1 SV=1 28 283 4.0E-09
sp|P72332|NODG_RHIS3 Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1 24 246 1.0E-08
sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 25 151 2.0E-08
sp|O75828|CBR3_HUMAN Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3 28 182 3.0E-08
sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1 18 172 3.0E-08
sp|A0PJE2|DHR12_HUMAN Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2 17 250 5.0E-08
sp|P48758|CBR1_MOUSE Carbonyl reductase [NADPH] 1 OS=Mus musculus GN=Cbr1 PE=1 SV=3 31 246 1.0E-07
sp|Q39617|POR_CHLRE Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1 9 141 1.0E-07
sp|Q49WS9|Y1627_STAS1 Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1 23 154 2.0E-07
sp|Q6P7J1|DHI1A_XENLA Hydroxysteroid 11-beta-dehydrogenase 1-like protein A OS=Xenopus laevis GN=hsd11b1l-a PE=2 SV=1 24 147 5.0E-07
sp|P46331|YXBG_BACSU Uncharacterized oxidoreductase YxbG OS=Bacillus subtilis (strain 168) GN=yxbG PE=3 SV=2 25 158 5.0E-07
sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 15 141 6.0E-07
sp|Q8MI29|CBR1_MACFA Carbonyl reductase [NADPH] 1 OS=Macaca fascicularis GN=CBR1 PE=2 SV=1 28 246 7.0E-07
sp|Q28960|CBR1_PIG Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3 28 177 9.0E-07
sp|O88736|DHB7_MOUSE 3-keto-steroid reductase OS=Mus musculus GN=Hsd17b7 PE=1 SV=1 28 120 1.0E-06
sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 18 141 3.0E-06
sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 25 141 5.0E-06
sp|Q62904|DHB7_RAT 3-keto-steroid reductase OS=Rattus norvegicus GN=Hsd17b7 PE=1 SV=1 28 120 5.0E-06
sp|Q53877|DNRU_STRS5 Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces sp. (strain C5) PE=3 SV=1 25 142 5.0E-06
sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 25 141 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|041480
MGRRSFFGFLYDQLRRVPDVIQTDLKDKTVVVVGANTGIGFQAAQHFARMNTGRLILACRSEKKGQAALDRLKAA
TGYSKAELWLVDLSEFSSVQAFADRAVKDLERLDILLLNAAVLPREDGSYTTTRDGWETTLHVNDLSFTLLSFLL
LPLMIDTAKKFNTHPRVVTVTSELHFRTSFEDKIFESPNAIEFMSSKDYCTPQIMKTRYPDTKLLNVFFTRALSN
RSKHQPVVFNCVNPGFCRSELLRDAKGIVIKLMSLLLAWSAEEGSRQLIWAAVGLPESGSLDEMRGAYVNRASIE
EPSDFVLGEEGKKREDKLYADTISIIQKVDPRVKEIESQYLI*
Coding >AgabiH97|041480
ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCGTCGAGTTCCCGATGTCATTCAGACAGATCTC
AAGGACAAGACAGTGGTCGTCGTTGGCGCCAATACTGGTATCGGTTTTCAAGCCGCGCAACATTTCGCGAGAATG
AATACTGGAAGGCTTATTCTGGCTTGTCGCAGCGAGAAGAAAGGCCAAGCAGCTCTGGATCGTTTGAAAGCAGCC
ACTGGCTATTCTAAGGCAGAATTGTGGTTGGTTGATCTTTCCGAATTCTCGTCCGTCCAAGCATTCGCCGATCGG
GCTGTGAAAGACCTAGAGAGGTTGGATATTCTGTTGTTAAATGCTGCCGTTCTACCTCGAGAAGATGGGTCATAT
ACCACAACTAGAGATGGATGGGAGACAACACTCCATGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTG
CTTCCTCTTATGATTGACACCGCCAAGAAGTTTAACACACATCCAAGGGTCGTCACCGTCACAAGCGAGCTTCAC
TTTAGGACGAGCTTCGAGGATAAAATATTTGAAAGTCCAAATGCAATCGAGTTTATGAGCAGCAAAGATTACTGT
ACACCCCAAATTATGAAAACCCGTTATCCTGATACGAAGCTTTTGAATGTGTTTTTCACTCGCGCTCTCAGCAAC
CGATCGAAACACCAGCCTGTTGTCTTCAATTGTGTTAACCCTGGCTTCTGTCGTTCCGAACTCCTCAGAGATGCA
AAGGGCATTGTCATCAAACTGATGTCATTATTGTTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCTAATCTGG
GCTGCTGTTGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACGTCAACAGAGCGAGCATCGAA
GAGCCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGCCGACACGATTTCTATC
ATACAAAAAGTGGATCCGCGCGTGAAAGAGATAGAGTCACAGTATTTGATCTAA
Transcript >AgabiH97|041480
ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCGTCGAGTTCCCGATGTCATTCAGACAGATCTC
AAGGACAAGACAGTGGTCGTCGTTGGCGCCAATACTGGTATCGGTTTTCAAGCCGCGCAACATTTCGCGAGAATG
AATACTGGAAGGCTTATTCTGGCTTGTCGCAGCGAGAAGAAAGGCCAAGCAGCTCTGGATCGTTTGAAAGCAGCC
ACTGGCTATTCTAAGGCAGAATTGTGGTTGGTTGATCTTTCCGAATTCTCGTCCGTCCAAGCATTCGCCGATCGG
GCTGTGAAAGACCTAGAGAGGTTGGATATTCTGTTGTTAAATGCTGCCGTTCTACCTCGAGAAGATGGGTCATAT
ACCACAACTAGAGATGGATGGGAGACAACACTCCATGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTG
CTTCCTCTTATGATTGACACCGCCAAGAAGTTTAACACACATCCAAGGGTCGTCACCGTCACAAGCGAGCTTCAC
TTTAGGACGAGCTTCGAGGATAAAATATTTGAAAGTCCAAATGCAATCGAGTTTATGAGCAGCAAAGATTACTGT
ACACCCCAAATTATGAAAACCCGTTATCCTGATACGAAGCTTTTGAATGTGTTTTTCACTCGCGCTCTCAGCAAC
CGATCGAAACACCAGCCTGTTGTCTTCAATTGTGTTAACCCTGGCTTCTGTCGTTCCGAACTCCTCAGAGATGCA
AAGGGCATTGTCATCAAACTGATGTCATTATTGTTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCTAATCTGG
GCTGCTGTTGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACGTCAACAGAGCGAGCATCGAA
GAGCCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGCCGACACGATTTCTATC
ATACAAAAAGTGGATCCGCGCGTGAAAGAGATAGAGTCACAGTATTTGATCTAA
Gene >AgabiH97|041480
ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCGTCGAGTTCCCGATGTCATTCAGACAGATCTC
AAGGACAAGACAGTGGTCGTCGTTGGCGCCAATACTGGTATCGGTTTTCAAGCCGCGCAACATTTCGCGAGAATG
AATACTGGAAGGCTTATTCTGGCTTGTCGCAGCGAGAAGAAAGGCCAAGCAGCTCTGGATCGTCAGTACATTATT
TTTTGGTTCTTACTTTTTTGAATAGTCGATTAATATGCATGATTCTAAAATGCAGGTTTGAAAGCAGCCACTGGC
TATTCTAAGGCAGAATTGTGGTTGGTTGATCTTTCCGAATTCTCGTCCGTCCAAGCATTCGCCGATCGGGCTGTG
AAAGACCTAGAGAGGTTGGATATTCTGTTGTTAAATGCTGCCGTTCTACCTCGAGAAGATGGGTCATATACCACA
ACTAGAGATGGATGGGAGACAACGTACGTGTCCATCTACCAAGTCATGATGGAACTTTAACGGTTGAATATGTCC
AACTAGACTCCATGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTGCTTCCTCTTATGATTGACACCGC
CAAGAAGTTTAACACACATCCAAGGGTCGTCACCGTCACAAGCGAGCTTCACTTTAGGACGAGCTTCGAGGATAA
AATATTTGAAAGTCCAAATGCAATCGAGTTTATGAGCAGCAAAGATTACTGTACACCCCAGTGAGTTGGCATTTA
AAACGTTGACTCGGCAAATAACTAATAACGAACAAGAATTATGAAAACCCGTTATCCTGATACGAAGCGTGAGTT
GTTCCCTACATTCATTGGACCTTATGTTGTTGATATTCTATTCCTAGTTTTGAATGTGTTTTTCACTCGCGCTCT
CAGCAACCGATCGAAACACCAGCCTGTTGTCTTCAATTGTGTTAACCCTGGCTTCTGTCGTTCCGAACTCCTCAG
AGATGCAAAGGGCATTGTCATCAAACTGATGTCATTATTGTTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCT
AATCTGGGCTGCTGTTGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACGTCAACAGAGCGAG
CATCGAAGAGCCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGTGAGTTCAAA
TCAAATGCTTCGTATGTCAATACTATTGACAATACAATTTCCGGCAGGCCGACACGATTTCTATCATACAAAAAG
TGGATCCGCGCGTGAAAGAGATAGAGTCACAGTATTTGATCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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