© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|041160 |
| Gene name | |
| Location | scaffold_2:695603..696728 |
| Strand | - |
| Gene length (bp) | 1125 |
| Transcript length (bp) | 954 |
| Coding sequence length (bp) | 954 |
| Protein length (aa) | 318 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 2.5E-11 | 152 | 215 |
| PF01713 | Smr | Smr domain | 1.8E-10 | 223 | 290 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08954|YP199_YEAST | Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 | 149 | 298 | 1.0E-24 |
| sp|Q9UTP4|YLL3_SCHPO | Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1 | 176 | 296 | 2.0E-16 |
| sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 150 | 296 | 2.0E-06 |
| sp|O64843|CID7_ARATH | Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 | 152 | 262 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 178.59 | 105.65 | 251.53 |
| Initials | Initials knots | 154.12 | 92.52 | 215.71 |
| Pileal_Stipeal_center | Stage I stipe center | 190.13 | 112.86 | 267.41 |
| Pileal_Stipeal_shell | Stage I stipe shell | 88.05 | 51.44 | 124.65 |
| DIF_stipe_center | Stage II stipe center | 183.08 | 109.01 | 257.15 |
| DIF_stipe_shell | Stage II stipe shell | 252.52 | 148.22 | 356.82 |
| DIF_stipe_skin | Stage II stipe skin | 221.39 | 130.72 | 312.05 |
| DIF_cap_skin | Stage II cap skin | 64.98 | 37.78 | 92.18 |
| DIF_cap_tissue | Stage II cap tissue | 82.20 | 48.86 | 115.54 |
| DIF_gill_tissue | Stage II gill tissue | 100.75 | 60.01 | 141.50 |
| YFB_stipe_center | Young fruiting body stipe center | 159.78 | 96.09 | 223.47 |
| YFB_stipe_shell | Young fruiting body stipe shell | 177.37 | 105.61 | 249.13 |
| YFB_stipe_skin | Young fruiting body stipe skin | 166.95 | 100.28 | 233.62 |
| YFB_cap_skin | Young fruiting body cap skin | 78.17 | 46.33 | 110.00 |
| YFB_cap_tissue | Young fruiting body cap tissue | 95.89 | 57.12 | 134.66 |
| YFB_gill_tissue | Young fruiting body gill tissue | 92.95 | 55.02 | 130.88 |
| YFB_veil | Young fruiting body veil | 98.15 | 57.53 | 138.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.034837 | yes |
| Casing | YFB_stipe_center | 0.806808 | no |
| Casing | YFB_stipe_shell | 0.989895 | no |
| Casing | YFB_stipe_skin | 0.894211 | no |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.021846 | yes |
| Casing | YFB_gill_tissue | 0.013485 | yes |
| Casing | YFB_veil | 0.026461 | yes |
| Casing | Initials | 0.720417 | no |
| Casing | Pileal_Stipeal_center | 0.902139 | no |
| Casing | Pileal_Stipeal_shell | 0.004160 | yes |
| Casing | DIF_stipe_center | 0.964132 | no |
| Casing | DIF_stipe_shell | 0.276906 | no |
| Casing | DIF_stipe_skin | 0.563298 | no |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.095478 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.033674 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.064141 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.457204 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.926929 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.872742 | no |
| DIF_gill_tissue | YFB_veil | 0.960732 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.815431 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.934697 | no |
| YFB_stipe_center | YFB_cap_skin | 0.003765 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.059513 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.038495 | yes |
| YFB_stipe_center | YFB_veil | 0.070681 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.906368 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.001140 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.017226 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.011350 | yes |
| YFB_stipe_shell | YFB_veil | 0.025458 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.001140 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.039836 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.022631 | yes |
| YFB_stipe_skin | YFB_veil | 0.048422 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.589880 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.658639 | no |
| YFB_cap_skin | YFB_veil | 0.526108 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.954131 | no |
| YFB_cap_tissue | YFB_veil | 0.965238 | no |
| YFB_gill_tissue | YFB_veil | 0.916737 | no |
| Initials | DIF_gill_tissue | 0.133562 | no |
| Initials | YFB_stipe_center | 0.946555 | no |
| Initials | YFB_stipe_shell | 0.733331 | no |
| Initials | YFB_stipe_skin | 0.868518 | no |
| Initials | YFB_cap_skin | 0.009123 | yes |
| Initials | YFB_cap_tissue | 0.089469 | no |
| Initials | YFB_gill_tissue | 0.059906 | no |
| Initials | YFB_veil | 0.107449 | no |
| Initials | Pileal_Stipeal_center | 0.562521 | no |
| Initials | Pileal_Stipeal_shell | 0.034604 | yes |
| Initials | DIF_stipe_center | 0.662953 | no |
| Initials | DIF_stipe_shell | 0.072862 | no |
| Initials | DIF_stipe_skin | 0.233318 | no |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.013782 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.016386 | yes |
| Pileal_Stipeal_center | YFB_stipe_center | 0.652372 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.888742 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.759468 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.008457 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.006032 | yes |
| Pileal_Stipeal_center | YFB_veil | 0.012274 | yes |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.001140 | yes |
| Pileal_Stipeal_center | DIF_stipe_center | 0.945585 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.395048 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.712762 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.758436 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.025711 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.006032 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.011968 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.791621 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.863291 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.918111 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.814191 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.004548 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.000613 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.359267 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.893549 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.026215 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.750732 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.953485 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.847023 | no |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.011350 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.007439 | yes |
| DIF_stipe_center | YFB_veil | 0.017783 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.317243 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.625304 | no |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.000613 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.101862 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.259385 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.154113 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_shell | YFB_veil | 0.000613 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.768896 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.000613 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.001140 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.290462 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.546875 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.391043 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_veil | 0.001625 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.000613 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.130393 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.640072 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.194842 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.242880 | no |
| DIF_cap_skin | YFB_veil | 0.165288 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.511724 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.588429 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.010093 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.002525 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.002951 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.926055 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.709873 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.780028 | no |
| DIF_cap_tissue | YFB_veil | 0.648885 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|041160 MPFFKPLLLLATFYGVCKLGSYLFGDDSPPPPPPPSPPSYPRSRSRSPRRAPRLGGQHAQAPSPHRCSSSCRAGR HVYQAQPPTTLQPQRRPVKTVSEHQPLSPQNVGQHHSRVESSPITDPYRSHDHHNPQVEPVRNAGASNKDDERDP HYVHLRNEAKKYYGLMIEARDGSKIARDQGNRALARELSSKRTEYSDLMESYHEQASEWIFYQLNRNNDPGEVDL HGLFVKEAIPRVERKLKEARARGAPSIRFIVGQGRHSDDGIPKLKPAIENLIRESGLSSRIEQFNPGALIVDFDS HSESRGRDYLRDRTNQG* |
| Coding | >AgabiH97|041160 ATGCCTTTCTTCAAACCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCGGT GATGACTCTCCGCCCCCTCCACCACCACCCTCTCCACCATCTTATCCCCGATCACGTTCACGTTCACCTCGACGA GCTCCGAGACTCGGAGGCCAACATGCACAGGCGCCATCTCCACACCGATGCTCTTCCTCTTGTCGTGCCGGTCGA CACGTCTACCAAGCCCAACCACCAACCACCCTACAGCCTCAACGCCGACCCGTAAAGACTGTATCAGAGCACCAG CCTCTTTCTCCCCAAAACGTGGGGCAACATCACTCCCGAGTCGAGTCCTCCCCCATAACGGATCCATATCGATCC CATGACCATCATAACCCGCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGATGATGAGCGAGATCCG CATTATGTCCACCTTCGCAATGAGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGGGAGTAAAATT GCTCGCGACCAAGGCAATCGTGCTCTAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAA AGTTATCATGAACAGGCCAGTGAATGGATATTTTACCAGCTCAACAGAAACAATGACCCAGGCGAAGTGGATTTA CACGGATTATTCGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAAGCTCGAGCGCGAGGTGCTCCA TCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAACTCAAACCTGCGATCGAAAAT TTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCCTTGATAGTCGACTTTGATTCT CACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA |
| Transcript | >AgabiH97|041160 ATGCCTTTCTTCAAACCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCGGT GATGACTCTCCGCCCCCTCCACCACCACCCTCTCCACCATCTTATCCCCGATCACGTTCACGTTCACCTCGACGA GCTCCGAGACTCGGAGGCCAACATGCACAGGCGCCATCTCCACACCGATGCTCTTCCTCTTGTCGTGCCGGTCGA CACGTCTACCAAGCCCAACCACCAACCACCCTACAGCCTCAACGCCGACCCGTAAAGACTGTATCAGAGCACCAG CCTCTTTCTCCCCAAAACGTGGGGCAACATCACTCCCGAGTCGAGTCCTCCCCCATAACGGATCCATATCGATCC CATGACCATCATAACCCGCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGATGATGAGCGAGATCCG CATTATGTCCACCTTCGCAATGAGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGGGAGTAAAATT GCTCGCGACCAAGGCAATCGTGCTCTAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAA AGTTATCATGAACAGGCCAGTGAATGGATATTTTACCAGCTCAACAGAAACAATGACCCAGGCGAAGTGGATTTA CACGGATTATTCGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAAGCTCGAGCGCGAGGTGCTCCA TCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAACTCAAACCTGCGATCGAAAAT TTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCCTTGATAGTCGACTTTGATTCT CACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA |
| Gene | >AgabiH97|041160 ATGCCTTTCTTCAAACCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCGGT GATGACTCTCCGCCCCCTCCACCACCACCCTCTCCACCATCTTATCCCCGATCACGTTCACGTTCACCTCGACGA GCTCCGAGACTCGGAGGCCAACATGCACAGGCGCCATCTCCACACCGATGCTCTTCCTCTTGTCGTGCCGGTCGA CACGTCTACCAAGCCCAACCACCAACCACCCTACAGCCTCAACGCCGACCCGTAAAGACTGTATCAGAGCACCAG CCTCTTTCTCCCCAAAACGTGGGGCAACATCACTCCCGAGTCGAGTCCTCCCCCATAACGGATCCATATCGATCC CATGACCATCATAACCCGCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGTCTGCCTGTCGAAACCT TATTTTTATGAGCATTCAGTTGATCGTTATGTTAGGATGATGAGCGAGATCCGCATTATGTCCACCTTCGCAATG AGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGGGAGTAAAATTGCTCGCGACCAAGGCAATCGTG CTCTAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAAAGTTATCATGAACAGGCCAGTG AATGGATATTTTACCGTAAGTTTTCGTCCCACTGATTTCAATCCGCGTTCTGATCCGAAAATCCGTCCTTAGAGC TCAACAGAGTTCGTGGATTATCTTCCTATTCGCTTCCGCTGTGTGTACTCAATGATCACCATTCATCAGAACAAT GACCCAGGCGAAGTGGATTTACACGGATTATTCGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAA GCTCGAGCGCGAGGTGCTCCATCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAA CTCAAACCTGCGATCGAAAATTTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCC TTGATAGTCGACTTTGATTCTCACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA |