Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|041070
Gene name
Locationscaffold_2:674868..676925
Strand+
Gene length (bp)2057
Transcript length (bp)1671
Coding sequence length (bp)1671
Protein length (aa) 557

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16199 Radical_SAM_C Radical_SAM C-terminal domain 1.1E-29 314 394
PF04055 Radical_SAM Radical SAM superfamily 5.9E-17 108 295
PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family 3.5E-10 401 544

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1 11 555 0.0E+00
sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae GN=elpc-3 PE=3 SV=1 11 555 0.0E+00
sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans GN=elpc-3 PE=3 SV=2 11 555 0.0E+00
sp|Q7X7L3|ELP3_ORYSJ Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3 PE=2 SV=2 9 556 0.0E+00
sp|Q1ZXC6|ELP3_DICDI Probable elongator complex protein 3 OS=Dictyostelium discoideum GN=elp3 PE=3 SV=1 15 555 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1 11 555 0.0E+00
sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae GN=elpc-3 PE=3 SV=1 11 555 0.0E+00
sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans GN=elpc-3 PE=3 SV=2 11 555 0.0E+00
sp|Q7X7L3|ELP3_ORYSJ Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3 PE=2 SV=2 9 556 0.0E+00
sp|Q1ZXC6|ELP3_DICDI Probable elongator complex protein 3 OS=Dictyostelium discoideum GN=elp3 PE=3 SV=1 15 555 0.0E+00
sp|Q93ZR1|ELP3_ARATH Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1 9 556 0.0E+00
sp|Q9CZX0|ELP3_MOUSE Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=1 SV=1 1 555 0.0E+00
sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2 1 555 0.0E+00
sp|Q2KJ61|ELP3_BOVIN Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2 4 555 0.0E+00
sp|Q9VQZ6|ELP3_DROME Probable elongator complex protein 3 OS=Drosophila melanogaster GN=Elp3 PE=2 SV=1 9 555 0.0E+00
sp|Q6NVL5|ELP3_XENTR Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1 11 555 0.0E+00
sp|Q02908|ELP3_YEAST Elongator complex protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP3 PE=1 SV=1 12 555 0.0E+00
sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3 1 555 0.0E+00
sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1 11 555 0.0E+00
sp|O14023|ELP3_SCHPO Probable elongator complex protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp3 PE=3 SV=1 18 555 0.0E+00
sp|Q58536|Y1136_METJA Uncharacterized protein MJ1136 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1136 PE=3 SV=1 39 555 3.0E-143
sp|Q57910|Y486_METJA Uncharacterized protein MJ0486 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0486 PE=3 SV=1 100 369 3.0E-14
sp|P0ADW6|YHCC_ECOLI Protein YhcC OS=Escherichia coli (strain K12) GN=yhcC PE=3 SV=1 185 381 6.0E-11
sp|P0ADW7|YHCC_ECO57 Uncharacterized protein YhcC OS=Escherichia coli O157:H7 GN=yhcC PE=3 SV=1 185 381 6.0E-11
sp|O35008|YTQA_BACSU Uncharacterized protein YtqA OS=Bacillus subtilis (strain 168) GN=ytqA PE=3 SV=1 178 406 2.0E-09
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GO

GO Term Description Terminal node
GO:0051536 iron-sulfur cluster binding Yes
GO:0008080 N-acetyltransferase activity Yes
GO:0003824 catalytic activity Yes
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups No
GO:0003674 molecular_function No
GO:0016407 acetyltransferase activity No
GO:0005488 binding No
GO:0016740 transferase activity No
GO:0016410 N-acyltransferase activity No
GO:0016746 acyltransferase activity No
GO:0051540 metal cluster binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|041070
MVQKTKTEGPSQAEQLLRVTSGIAAELIKAHDSNTSVSLNEIRARVSKKHAFGGVPRLVDIISAIPDDYKKALLP
KLKARPIRTASGIAVVAVMCKPHRCPHIAMTGNICVYCPGGPDSDFDYSTQSYTGYEPTSMRAIRARYDPYEQTR
GRVEQLKSLGHNVDKVEFIIMGGTFMSMPEDYRNKFIAQLHNALSGYTGLDVDEAVRFSEQSKSKAIGITIETRP
DYCLRPHLSQMLRYGCTRLEVGVQSVYEDVARDTNRGHTVRAVSESFHLAKDAGFKVVAHMMPDLPNVGVERDLE
QFKEYFENPAFRSDGLKIYPTLVIRGTGLYELWRTGRYKNYTPNVLVDVVARILALVPPWTRVYRVQRDIPLPLV
TSGCENSGNLRELALNRMKDFGAVCRDVRFREVGIHEIHHKVRPESVELLRRDYTANGGWETFLSYEDPEKDILV
GLLRLRKCSEEGTFRPELVTQPGAEGGCSIVRELHVYGTAVPVHGRDPTKFQHQGFGTLLMEEAERIAREEHGSV
KIAVISGVGTRDYYRKLGYELDGPYMSKTLV*
Coding >AgabiH97|041070
ATGGTCCAGAAAACCAAAACCGAGGGACCCTCACAAGCTGAACAACTTCTGCGCGTAACGTCTGGCATTGCAGCC
GAGCTCATCAAAGCGCACGATTCCAATACTTCTGTATCGCTCAATGAAATTCGTGCTCGTGTATCTAAAAAGCAC
GCTTTTGGAGGTGTTCCGCGACTCGTCGACATCATCAGCGCGATTCCGGATGACTACAAGAAGGCTCTTCTCCCG
AAGCTCAAAGCGAGACCTATTCGGACTGCAAGTGGTATCGCGGTGGTTGCGGTTATGTGCAAGCCTCACAGATGT
CCTCATATCGCCATGACCGGTAACATATGTGTATATTGTCCAGGAGGACCTGATTCGGACTTTGACTATAGTACG
CAAAGCTACACTGGATACGAACCGACAAGCATGCGTGCCATTCGTGCTCGATACGACCCGTACGAACAGACGAGA
GGGCGAGTGGAACAGTTGAAGAGTCTGGGCCATAACGTTGATAAAGTTGAATTCATCATCATGGGTGGGACATTC
ATGAGCATGCCAGAGGATTATCGAAACAAGTTTATTGCACAGTTGCATAATGCCTTGTCCGGGTACACAGGTTTA
GATGTAGATGAAGCAGTCCGGTTCTCCGAACAGAGCAAATCAAAAGCCATAGGAATAACGATCGAAACACGGCCA
GATTACTGTCTCCGCCCACACCTTTCCCAAATGCTCCGATACGGCTGCACTCGTCTAGAAGTTGGTGTCCAGTCT
GTTTACGAAGACGTCGCTCGTGATACAAATCGAGGCCATACCGTTCGCGCAGTCTCTGAATCGTTCCATCTCGCC
AAAGATGCTGGTTTCAAAGTTGTCGCCCACATGATGCCTGATCTTCCCAATGTCGGTGTTGAACGCGATTTGGAG
CAGTTCAAAGAATATTTCGAGAATCCGGCATTTAGGAGTGATGGACTGAAAATATATCCGACTCTGGTGATTCGA
GGGACGGGTTTATATGAGCTTTGGAGGACGGGGAGGTATAAGAACTATACGCCGAATGTACTGGTGGATGTCGTT
GCGAGAATTTTAGCTTTGGTTCCGCCCTGGACGAGGGTATATCGCGTGCAAAGGGATATCCCGCTCCCACTCGTA
ACAAGTGGATGTGAGAATTCGGGGAATCTACGAGAACTTGCTCTAAACAGGATGAAGGACTTTGGAGCTGTCTGT
CGGGACGTACGGTTCCGTGAAGTCGGAATCCATGAAATTCACCATAAAGTTCGTCCAGAGTCTGTGGAGCTTCTA
CGAAGGGATTACACAGCGAACGGAGGCTGGGAAACCTTCCTTTCTTACGAAGACCCTGAAAAAGATATCCTCGTC
GGTCTTCTGCGTCTCCGAAAATGTTCAGAAGAAGGTACATTCCGGCCAGAACTGGTTACTCAACCCGGTGCAGAG
GGTGGATGTAGTATCGTCAGAGAACTACATGTATATGGAACAGCTGTACCCGTTCATGGCCGTGATCCAACGAAA
TTTCAGCATCAGGGATTCGGAACGTTGTTGATGGAGGAAGCGGAGAGAATTGCGAGAGAGGAACATGGGAGTGTG
AAGATTGCTGTGATTTCGGGTGTGGGGACGAGAGATTATTATAGGAAGTTGGGGTATGAGTTGGATGGACCATAT
ATGAGCAAGACGCTGGTTTGA
Transcript >AgabiH97|041070
ATGGTCCAGAAAACCAAAACCGAGGGACCCTCACAAGCTGAACAACTTCTGCGCGTAACGTCTGGCATTGCAGCC
GAGCTCATCAAAGCGCACGATTCCAATACTTCTGTATCGCTCAATGAAATTCGTGCTCGTGTATCTAAAAAGCAC
GCTTTTGGAGGTGTTCCGCGACTCGTCGACATCATCAGCGCGATTCCGGATGACTACAAGAAGGCTCTTCTCCCG
AAGCTCAAAGCGAGACCTATTCGGACTGCAAGTGGTATCGCGGTGGTTGCGGTTATGTGCAAGCCTCACAGATGT
CCTCATATCGCCATGACCGGTAACATATGTGTATATTGTCCAGGAGGACCTGATTCGGACTTTGACTATAGTACG
CAAAGCTACACTGGATACGAACCGACAAGCATGCGTGCCATTCGTGCTCGATACGACCCGTACGAACAGACGAGA
GGGCGAGTGGAACAGTTGAAGAGTCTGGGCCATAACGTTGATAAAGTTGAATTCATCATCATGGGTGGGACATTC
ATGAGCATGCCAGAGGATTATCGAAACAAGTTTATTGCACAGTTGCATAATGCCTTGTCCGGGTACACAGGTTTA
GATGTAGATGAAGCAGTCCGGTTCTCCGAACAGAGCAAATCAAAAGCCATAGGAATAACGATCGAAACACGGCCA
GATTACTGTCTCCGCCCACACCTTTCCCAAATGCTCCGATACGGCTGCACTCGTCTAGAAGTTGGTGTCCAGTCT
GTTTACGAAGACGTCGCTCGTGATACAAATCGAGGCCATACCGTTCGCGCAGTCTCTGAATCGTTCCATCTCGCC
AAAGATGCTGGTTTCAAAGTTGTCGCCCACATGATGCCTGATCTTCCCAATGTCGGTGTTGAACGCGATTTGGAG
CAGTTCAAAGAATATTTCGAGAATCCGGCATTTAGGAGTGATGGACTGAAAATATATCCGACTCTGGTGATTCGA
GGGACGGGTTTATATGAGCTTTGGAGGACGGGGAGGTATAAGAACTATACGCCGAATGTACTGGTGGATGTCGTT
GCGAGAATTTTAGCTTTGGTTCCGCCCTGGACGAGGGTATATCGCGTGCAAAGGGATATCCCGCTCCCACTCGTA
ACAAGTGGATGTGAGAATTCGGGGAATCTACGAGAACTTGCTCTAAACAGGATGAAGGACTTTGGAGCTGTCTGT
CGGGACGTACGGTTCCGTGAAGTCGGAATCCATGAAATTCACCATAAAGTTCGTCCAGAGTCTGTGGAGCTTCTA
CGAAGGGATTACACAGCGAACGGAGGCTGGGAAACCTTCCTTTCTTACGAAGACCCTGAAAAAGATATCCTCGTC
GGTCTTCTGCGTCTCCGAAAATGTTCAGAAGAAGGTACATTCCGGCCAGAACTGGTTACTCAACCCGGTGCAGAG
GGTGGATGTAGTATCGTCAGAGAACTACATGTATATGGAACAGCTGTACCCGTTCATGGCCGTGATCCAACGAAA
TTTCAGCATCAGGGATTCGGAACGTTGTTGATGGAGGAAGCGGAGAGAATTGCGAGAGAGGAACATGGGAGTGTG
AAGATTGCTGTGATTTCGGGTGTGGGGACGAGAGATTATTATAGGAAGTTGGGGTATGAGTTGGATGGACCATAT
ATGAGCAAGACGCTGGTTTGA
Gene >AgabiH97|041070
ATGGTCCAGAAAACCAAAACCGAGGGTCAGTATATCTCATTTTATCTTTCTTAGCTAGTCTTACCCTTCCACCTT
GACTACCGCAGGACCCTCACAAGCTGAACAACTTCTGCGCGTAACGTCTGGCATTGCAGCCGAGCTCATCAAAGC
GCACGATTCCAATACTTCTGTATCGCTCAATGAAATTCGTGCTCGTGTATCTAAAAAGCACGCTTTTGGAGGTGT
TCCGCGACTCGTCGACATCATCAGCGCGATTCCGGATGACTACAAGAAGGCTCTTCTCCCGAAGCTCAAAGCGAG
ACCTATTCGGACTGCAAGTGGTGTACGTACCCTGCCGAAATTGGAGCTGGCCCATTGTGACATTCTTGATGTAGA
TCGCGGTGGTTGCGGTTATGTGCAAGCCTCACAGATGTCCTCATATCGCCATGACCGGTAACATATGTGTGTGCG
CTCAAAAATTTCTTTCATCTTGGTTCTCGCGATCGATCTGACAACGACCAGATATTGTCCAGGAGGACCTGATTC
GGACTTTGACTATAGTACGCAAAGCTACACTGGATACGAACCGACAAGCATGCGTGCCATTCGTGCTCGATACGA
CCCGTACGAACAGACGAGAGGGCGAGTGGAACAGTTGAAGAGTCTGGGCCATAACGTTGATAAAGTAACGTCGGC
TACCATCTTGGATACAATTTCAATCTGATGATTTCTAGGTTGAATTCATCATCATGGGTGGGACATTCATGAGCA
TGCCAGAGGATTATCGAAACAAGTTTATTGCACAGTTGCATAATGCCTTGTCCGGGTACACAGGTTTAGATGTAG
ATGAAGCAGTCCGGTACGTCGATCCACTCGTTAAGCGCACACTCCTTCATACCTGATCATTGTGCTACAGGTTCT
CCGAACAGAGCAAATCAAAAGCCATAGGAATAACGATCGAAACACGGCCAGATTACTGTCTCCGCCCACACCTTT
CCCAAATGCTCCGATACGGCTGCACTCGTCTAGAAGTTGGTGTCCAGTCTGTTTACGAAGACGTCGCTCGTGATA
CAAATCGAGGCCATACCGTTCGCGCAGTCTCTGAATCGTTCCATCTCGCCAAAGATGCTGGTTTCAAAGTTGTCG
CCCACATGATGCCTGATCTTCCCAATGTCGGTGTTGAACGCGATTTGGAGCAGTTCAAAGAATATTTCGAGAATC
CGGCATTTAGGAGTGATGGACTGAAAATATATCCGACTCTGGTGATTCGAGGGACGGGTTTATATGAGCTTTGGA
GGACGGGGAGGTATAAGAACTATACGCCGAATGTACTGGTGGATGTCGTTGCGAGAATTTTAGCTTTGGTTCCGC
CCTGGACGAGGGTATATCGCGTGCAAAGGTGAGTAGTTTGGCGACCTCAGTTTCGTGAGGGATCTGAAGCTATTC
TTTGGCAGGGATATCCCGCTCCCACTCGTAACAAGTGGATGTGAGAATTCGGGGAATCTACGAGAACTTGCTCTA
AACAGGATGAAGGACTTTGGAGCTGTCTGTCGGGACGTACGGTTCCGTGAAGTCGGAGTGAGTAACACGATCTAT
CTCTCGCTCTGTAACTTGACATTCGCTTTACATTACAGATCCATGAAATTCACCATAAAGTTCGTCCAGAGTCTG
TGGAGCTTCTACGAAGGGATTACACAGCGAACGGAGGCTGGGAAACCTTCCTTTCTTACGAAGACCCTGAAAAAG
ATATCCTCGTCGGTCTTCTGCGTCTCCGAAAATGTTCAGAAGAAGGTACATTCCGGCCAGAACTGGTTACTCAAC
CCGGTGCAGAGGGTGGATGTAGTATCGTCAGAGAACTACATGTATATGGAACAGCTGTACCCGTTCATGGCCGTG
ATCCAACGAAATTTCAGCATCAGGGATTCGGAACGTTGTTGATGGAGGAAGCGGAGAGAATTGCGAGAGAGGAAC
ATGGGAGTGTGAAGATTGCTGTGATTTCGGGTGTGGGGACGAGAGATTATTATAGGAAGTTGGGGTATGAGTTGG
ATGGACCATATATGAGCAAGACGCTGGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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