© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|041030 |
| Gene name | |
| Location | scaffold_2:664627..666082 |
| Strand | + |
| Gene length (bp) | 1455 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01713 | Smr | Smr domain | 2.9E-13 | 320 | 381 |
| PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 1.3E-08 | 251 | 312 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08954|YP199_YEAST | Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 | 245 | 395 | 7.0E-18 |
| sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 265 | 395 | 9.0E-10 |
| sp|Q9UTP4|YLL3_SCHPO | Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1 | 258 | 376 | 3.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|041030 MSFLVFILVVLFLVCLVVLIRGIRRYRSEHPLLPRTNRHLYSGYTEPRQYQRPVESRGIVPRSILSSSTHHEVVG VSKAFTTQPQQSPRPLPPPPLPPRPIYTAVRKLQQNSLSRHELPGALVEQVNQPDIKAPPVQKKIVEPPVKPLEP IYQSVPELPVAARKPQLSVARNDLPGPSVEQVHRTVVKPPVQPCIKPVEPIYQPVPRLVVARPLQFFQSSELLIE AVQQDVDDDDDDYDDDLEAKDLDHLTLRELANQEYESMKKCRQEEKSTRRHHRLKEARNFASKAQQHERHMRILN DRASEVIFAENNKDLTLRKIDLHGLRVKEAIQHTDRALKQARERGNSEMRIIVGKGLHSKDGNPKIKPAIQAFLE KHHFPVEVDPRNIGALNVRLDFAFSS* |
| Coding | >AgabiH97|041030 ATGTCTTTCCTCGTTTTTATCTTGGTTGTGCTTTTCTTGGTCTGCCTCGTCGTTTTGATTCGAGGGATCCGGAGG TATAGGTCTGAACACCCCCTTCTTCCCCGGACAAATCGACATCTGTATAGTGGTTATACTGAACCGAGGCAGTAT CAGCGGCCTGTAGAATCTCGGGGTATTGTACCTCGTAGTATTCTTTCCTCTTCGACGCACCACGAAGTTGTAGGT GTTTCGAAGGCCTTTACTACTCAGCCGCAACAATCCCCGAGACCTCTTCCTCCTCCTCCTCTTCCTCCTCGTCCC ATTTACACTGCAGTTCGAAAACTTCAACAGAATTCTCTTTCGCGGCATGAGCTTCCTGGAGCTTTGGTTGAGCAG GTTAACCAACCTGATATCAAAGCTCCTCCTGTTCAGAAGAAGATTGTTGAACCGCCTGTGAAGCCTCTTGAACCA ATATATCAATCGGTTCCGGAACTTCCTGTCGCTGCTCGAAAACCACAACTGTCCGTTGCAAGGAATGATCTTCCT GGACCTTCGGTTGAGCAAGTTCATCGAACGGTTGTAAAACCTCCTGTTCAACCGTGTATAAAACCTGTTGAACCG ATATATCAGCCGGTACCGAGGCTTGTTGTAGCAAGGCCTCTACAATTTTTTCAGTCATCTGAATTACTAATTGAA GCCGTTCAGCAGGACGTGGATGATGATGATGATGATTATGATGACGATTTAGAAGCAAAAGATCTCGATCATCTC ACTCTGCGTGAATTAGCGAATCAAGAATATGAAAGTATGAAAAAGTGTCGTCAGGAGGAAAAATCGACGAGGAGG CATCATCGATTGAAGGAAGCAAGAAATTTTGCTAGTAAAGCTCAGCAACACGAGCGGCATATGCGGATATTGAAT GATCGGGCGAGCGAAGTGATTTTTGCCGAGAATAATAAGGATCTCACTTTACGGAAGATCGACCTGCACGGGTTA AGAGTGAAAGAAGCTATTCAACATACGGACCGTGCCCTTAAACAAGCTCGTGAGCGCGGCAATTCAGAAATGCGT ATAATAGTTGGCAAAGGTCTTCATTCGAAAGACGGTAATCCCAAGATTAAGCCAGCAATTCAGGCTTTCTTGGAA AAGCATCATTTTCCGGTGGAAGTTGACCCAAGGAACATAGGAGCCCTGAATGTCAGGCTCGATTTCGCATTTAGT TCCTGA |
| Transcript | >AgabiH97|041030 ATGTCTTTCCTCGTTTTTATCTTGGTTGTGCTTTTCTTGGTCTGCCTCGTCGTTTTGATTCGAGGGATCCGGAGG TATAGGTCTGAACACCCCCTTCTTCCCCGGACAAATCGACATCTGTATAGTGGTTATACTGAACCGAGGCAGTAT CAGCGGCCTGTAGAATCTCGGGGTATTGTACCTCGTAGTATTCTTTCCTCTTCGACGCACCACGAAGTTGTAGGT GTTTCGAAGGCCTTTACTACTCAGCCGCAACAATCCCCGAGACCTCTTCCTCCTCCTCCTCTTCCTCCTCGTCCC ATTTACACTGCAGTTCGAAAACTTCAACAGAATTCTCTTTCGCGGCATGAGCTTCCTGGAGCTTTGGTTGAGCAG GTTAACCAACCTGATATCAAAGCTCCTCCTGTTCAGAAGAAGATTGTTGAACCGCCTGTGAAGCCTCTTGAACCA ATATATCAATCGGTTCCGGAACTTCCTGTCGCTGCTCGAAAACCACAACTGTCCGTTGCAAGGAATGATCTTCCT GGACCTTCGGTTGAGCAAGTTCATCGAACGGTTGTAAAACCTCCTGTTCAACCGTGTATAAAACCTGTTGAACCG ATATATCAGCCGGTACCGAGGCTTGTTGTAGCAAGGCCTCTACAATTTTTTCAGTCATCTGAATTACTAATTGAA GCCGTTCAGCAGGACGTGGATGATGATGATGATGATTATGATGACGATTTAGAAGCAAAAGATCTCGATCATCTC ACTCTGCGTGAATTAGCGAATCAAGAATATGAAAGTATGAAAAAGTGTCGTCAGGAGGAAAAATCGACGAGGAGG CATCATCGATTGAAGGAAGCAAGAAATTTTGCTAGTAAAGCTCAGCAACACGAGCGGCATATGCGGATATTGAAT GATCGGGCGAGCGAAGTGATTTTTGCCGAGAATAATAAGGATCTCACTTTACGGAAGATCGACCTGCACGGGTTA AGAGTGAAAGAAGCTATTCAACATACGGACCGTGCCCTTAAACAAGCTCGTGAGCGCGGCAATTCAGAAATGCGT ATAATAGTTGGCAAAGGTCTTCATTCGAAAGACGGTAATCCCAAGATTAAGCCAGCAATTCAGGCTTTCTTGGAA AAGCATCATTTTCCGGTGGAAGTTGACCCAAGGAACATAGGAGCCCTGAATGTCAGGCTCGATTTCGCATTTAGT TCCTGA |
| Gene | >AgabiH97|041030 ATGTCTTTCCTCGTTTTTATCTTGGTTGTGCTTTTCTTGGTCTGCCTCGTCGTTTTGATTCGAGGGATCCGGAGG TATAGGTCTGAACACCCCCTTCTTCCCCGGACAAATCGACATCTGTATAGTGGTTATACTGAACCGAGGCAGTAT CAGCGGCCTGTAGAATCTCGGGGTATTGTACCTCGTAGTATTCTTTCCTCTTCGACGCACCACGAAGTTGTAGGT GTTTCGAAGGCCTTTACTACTCAGCCGCAACAATCCCCGAGACCTCTTCCTCCTCCTCCTCTTCCTCCTCGTCCC ATTTACACTGCAGTTCGAAAACTTCAACAGAATTCTCTTTCGCGGCATGAGCTTCCTGGAGCTTTGGTTGAGCAG GTTAACCAACCTGATATCAAAGCTCCTCCTGTTCAGAAGAAGATTGTTGAACCGCCTGTGAAGCCTCTTGAACCA ATATATCAATCGGTTCCGGAACTTCCTGTCGCTGCTCGAAAACCACAACTGTCCGTTGCAAGGAATGATCTTCCT GGACCTTCGGTTGAGCAAGTTCATCGAACGGTTGTAAAACCTCCTGTTCAACCGTGTATAAAACCTGTTGAACCG ATATATCAGCCGGTACCGAGGCTTGTTGTAGCAAGGCCTCTACAATTTTTTCAGTCATCTGAATTACTAATTGAA GCCGTTCAGCAGGTAAGTCTGTGTTCTTTTCTTTTTCAAGCCACCTGGCTCACATCTTTCACGTCGATAATTACA AAGGACGTGGATGATGATGATGATGATTATGATGACGATTTAGAAGCAAAAGATCTCGATCATCTCACTCTGCGT GAATTAGCGAATCAAGAATATGAAAGTATGAAAAAGTGTCGTCAGGAGGAAAAATCGACGAGGAGGCATCATCGA TTGAAGGAAGCAAGAAATTTTGCTAGTAAAGCTCAGCAACACGAGCGGCATATGCGGATATTGAATGATCGGGCG AGCGAAGTGATTTTTGCCGGTACGTTTCTCTCTCTCTCCATACTCTGATAATGAATTGAATATGTGGTACATAGA GAATAATAAGGTCTCGTCGTTAAGATTACTGCATTTTATTATTATTATTTATTAACTTGGGACCAGGATCTCACT TTACGGAAGATCGACCTGCACGGGTTAAGAGTGAAAGAAGCTATTCAACATACGGACCGTGCCCTTAAACAAGCT CGTGAGCGCGGCAATTCAGAAATGCGTATAATAGTTGGCAAAGGTCTTCATTCGAAAGACGGTAATCCCAAGATT AAGCCAGCAATTCAGGCTTTCTTGGAAAAGTAAGTGATATTTAATATATTTTACTGCGTCGCGATGTGCGTTCTG ACAAACTTCTTTCTCTTCTTTTAAAGGCATCATTTTCCGGTGGAAGTTGACCCAAGGAACATAGGAGCCCTGAAT GTCAGGCTCGATTTCGCATTTAGTTCCTGA |