© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|040720 |
| Gene name | |
| Location | scaffold_2:587094..587829 |
| Strand | - |
| Gene length (bp) | 735 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08284 | RVP_2 | Retroviral aspartyl protease | 6.9E-10 | 34 | 132 |
| PF13975 | gag-asp_proteas | gag-polyprotein putative aspartyl protease | 5.0E-09 | 26 | 117 |
| PF13650 | Asp_protease_2 | Aspartyl protease | 1.1E-07 | 25 | 115 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q86TG7|PEG10_HUMAN | Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2 | 8 | 139 | 9.0E-07 |
| sp|Q7TN75|PEG10_MOUSE | Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2 | 8 | 133 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|040720 MNNRYVVPQKRLGVQELEVKPLLTTTNGKKLKVSAMVDSGCTHTCIDEGLVKRKKIPTKKLERPITCRNSDGTIA GKKDITKFAKIDLNINGHNEQLDAVVTPLQSSDLFLGHDWLTNHNPEINWKQGIIKFNRCPTSCSFPHTDISFEP RIRRLQSNEDTEEKEPDPTNPEDLPAYMKPFAHLFNKKNFDKLPERTEWDHEVNFTENAPTEISSKVYSMTPLEK SISRDVEMSEHDDVLPIGW* |
| Coding | >AgabiH97|040720 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA |
| Transcript | >AgabiH97|040720 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA |
| Gene | >AgabiH97|040720 ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA |