Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040720
Gene name
Locationscaffold_2:587094..587829
Strand-
Gene length (bp)735
Transcript length (bp)735
Coding sequence length (bp)735
Protein length (aa) 245

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08284 RVP_2 Retroviral aspartyl protease 6.9E-10 34 132
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.0E-09 26 117
PF13650 Asp_protease_2 Aspartyl protease 1.1E-07 25 115

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2 8 139 9.0E-07
sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2 8 133 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040720
MNNRYVVPQKRLGVQELEVKPLLTTTNGKKLKVSAMVDSGCTHTCIDEGLVKRKKIPTKKLERPITCRNSDGTIA
GKKDITKFAKIDLNINGHNEQLDAVVTPLQSSDLFLGHDWLTNHNPEINWKQGIIKFNRCPTSCSFPHTDISFEP
RIRRLQSNEDTEEKEPDPTNPEDLPAYMKPFAHLFNKKNFDKLPERTEWDHEVNFTENAPTEISSKVYSMTPLEK
SISRDVEMSEHDDVLPIGW*
Coding >AgabiH97|040720
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT
CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG
AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA
Transcript >AgabiH97|040720
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT
CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG
AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA
Gene >AgabiH97|040720
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGATCTAAACATCAACGGTCATAACGAACAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGATCTCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAACTACCTGAACGAACGGAATGGGAT
CACGAAGTTAACTTCACGGAAAACGCACCAACGGAGATATCATCAAAGGTTTATAGCATGACACCACTGGAGAAG
AGTATATCCAGGGATGTGGAAATGAGTGAGCATGATGACGTCCTTCCTATAGGTTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail