© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|040700 |
| Gene name | |
| Location | scaffold_2:581561..582626 |
| Strand | - |
| Gene length (bp) | 1065 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 4.9E-06 | 78 | 104 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 1.4E-04 | 79 | 103 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 43.76 | 23.82 | 63.70 |
| Initials | Initials knots | 27.44 | 14.16 | 40.73 |
| Pileal_Stipeal_center | Stage I stipe center | 58.88 | 33.22 | 84.54 |
| Pileal_Stipeal_shell | Stage I stipe shell | 55.27 | 31.14 | 79.40 |
| DIF_stipe_center | Stage II stipe center | 85.67 | 50.11 | 121.23 |
| DIF_stipe_shell | Stage II stipe shell | 68.92 | 39.72 | 98.11 |
| DIF_stipe_skin | Stage II stipe skin | 46.13 | 25.44 | 66.83 |
| DIF_cap_skin | Stage II cap skin | 43.77 | 23.97 | 63.57 |
| DIF_cap_tissue | Stage II cap tissue | 68.96 | 39.66 | 98.26 |
| DIF_gill_tissue | Stage II gill tissue | 87.63 | 51.43 | 123.83 |
| YFB_stipe_center | Young fruiting body stipe center | 61.85 | 34.70 | 88.99 |
| YFB_stipe_shell | Young fruiting body stipe shell | 76.82 | 43.98 | 109.66 |
| YFB_stipe_skin | Young fruiting body stipe skin | 55.01 | 30.74 | 79.28 |
| YFB_cap_skin | Young fruiting body cap skin | 33.31 | 17.49 | 49.12 |
| YFB_cap_tissue | Young fruiting body cap tissue | 52.92 | 29.52 | 76.32 |
| YFB_gill_tissue | Young fruiting body gill tissue | 40.18 | 21.48 | 58.88 |
| YFB_veil | Young fruiting body veil | 50.88 | 28.22 | 73.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.013485 | yes |
| Casing | YFB_stipe_center | 0.329668 | no |
| Casing | YFB_stipe_shell | 0.058347 | no |
| Casing | YFB_stipe_skin | 0.576722 | no |
| Casing | YFB_cap_skin | 0.506327 | no |
| Casing | YFB_cap_tissue | 0.664291 | no |
| Casing | YFB_gill_tissue | 0.884156 | no |
| Casing | YFB_veil | 0.756270 | no |
| Casing | Initials | 0.172307 | no |
| Casing | Pileal_Stipeal_center | 0.428091 | no |
| Casing | Pileal_Stipeal_shell | 0.569998 | no |
| Casing | DIF_stipe_center | 0.019442 | yes |
| Casing | DIF_stipe_shell | 0.150982 | no |
| Casing | DIF_stipe_skin | 0.929789 | no |
| Casing | DIF_cap_skin | 0.999444 | no |
| Casing | DIF_cap_tissue | 0.147141 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.282109 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.771151 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.109929 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.077698 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.005671 | yes |
| DIF_gill_tissue | YFB_veil | 0.063954 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.583799 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.810507 | no |
| YFB_stipe_center | YFB_cap_skin | 0.039836 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.723535 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.197946 | no |
| YFB_stipe_center | YFB_veil | 0.644350 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.313622 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.002525 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.248019 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.030134 | yes |
| YFB_stipe_shell | YFB_veil | 0.196757 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.110080 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.947284 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.400308 | no |
| YFB_stipe_skin | YFB_veil | 0.887076 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.153833 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.699916 | no |
| YFB_cap_skin | YFB_veil | 0.217538 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.483762 | no |
| YFB_cap_tissue | YFB_veil | 0.945912 | no |
| YFB_gill_tissue | YFB_veil | 0.576211 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.004928 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.019987 | yes |
| Initials | YFB_cap_skin | 0.683582 | no |
| Initials | YFB_cap_tissue | 0.033211 | yes |
| Initials | YFB_gill_tissue | 0.310583 | no |
| Initials | YFB_veil | 0.053150 | no |
| Initials | Pileal_Stipeal_center | 0.009773 | yes |
| Initials | Pileal_Stipeal_shell | 0.020523 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.001625 | yes |
| Initials | DIF_stipe_skin | 0.112721 | no |
| Initials | DIF_cap_skin | 0.164492 | no |
| Initials | DIF_cap_tissue | 0.001625 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.205177 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.931559 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.472174 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.901486 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.063760 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.828893 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.275539 | no |
| Pileal_Stipeal_center | YFB_veil | 0.755464 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.908837 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.240931 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.722673 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.531625 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.420780 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.721179 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.122473 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.819112 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.332007 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.993123 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.109462 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.939167 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.388395 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.876712 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.146589 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.573036 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.674137 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.554291 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.568043 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.967560 | no |
| DIF_stipe_center | YFB_stipe_center | 0.332902 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.821119 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.133289 | no |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.097608 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.008457 | yes |
| DIF_stipe_center | YFB_veil | 0.077879 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.573429 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.027943 | yes |
| DIF_stipe_center | DIF_cap_skin | 0.014374 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.571885 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.522819 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.825623 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.823953 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.564102 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.011968 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.480469 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.085561 | no |
| DIF_stipe_shell | YFB_veil | 0.399688 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.220912 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.149625 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.998697 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.019715 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.425833 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.091664 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.689330 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.383227 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.768767 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.783748 | no |
| DIF_stipe_skin | YFB_veil | 0.850816 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.928069 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.211699 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.011350 | yes |
| DIF_cap_skin | YFB_stipe_center | 0.316787 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.054575 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.566429 | no |
| DIF_cap_skin | YFB_cap_skin | 0.493841 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.657989 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.880438 | no |
| DIF_cap_skin | YFB_veil | 0.749700 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.139267 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.521019 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.826072 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.827049 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.562299 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.011350 | yes |
| DIF_cap_tissue | YFB_cap_tissue | 0.475154 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.078410 | no |
| DIF_cap_tissue | YFB_veil | 0.393887 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|040700 MYKRGTRLNTSLTHSPPFYPFRVYNALLRSLRPLLSYLACLQPTQDHYEAVHSWCRQCDRFFANDHSRHEHYRQS SVHFYCAPCERLFRSESNLRAHRNSSVHQPRSVKCRGKGCDRTFVSVSAMILHLEGGKCVSGIDRTYVNQKVREY DRNNIITDPSRMLTGPSSQGESWYYATDRAWNGYAFECYLCHNTYRTLLALNQHLGSPRHQDKFYICPLDTCRTR FRTLSGLCQHIESQRCGIHKFRVVKDTMDSVLNGMNRLTL* |
| Coding | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
| Transcript | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
| Gene | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGGTGCGTCC TACCCCGGTAACCAGCGACGCTACATTCGTGTCCTTATCCCTCATCCCCTCCAGTATACAATGCCTTACTGCGAT CGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACGTGAACAATTCGGCATCCCACAACATCTGC GATGAATGTGACATCGACTTTTCCGACTGGAGTGATTTGCAGGATCATTGGGTTGAAAGCCCATACCACTCTTAT TGTCAACCCTGTAACGAGCGTTTCGATGATGATGATGACCTAGAGGATCACTATGAAGCGGTACATTCTTGGTGC CGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCTTCTGTACACTTTTAC TGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGGTAAGCCTATCTATGACCCGCATACAT CTTTGATACTGATGAGTGTTCCTCTCCCAGCATCGCAATTCTTCTGTTCATCAGCCTCGTAGCGTCAAATGTCGT GGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATGATCCTTCACCTCGAAGGCGGCAAATGCGTCTCT GGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTATGATCGAAACAACATCATCACCGACCCATCTCGC ATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTACGCGACAGATCGTGCGTGGAACGGATACGCCTTT GAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCCCTTAACCAGCATCTCGGGAGCCCTCGCCACCAG GACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGGTTCAGAACTTTGAGCGGATTGTGTCAACATATC GAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAGGATACGATGGATTCGGTGCTTAACGGAATGAAC CGTTTGACCTTGTGA |