Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|040700
Gene name
Location	scaffold_2:581561..582626
Strand	-
Gene length (bp)	1065
Transcript length (bp)	798
Coding sequence length (bp)	798
Protein length (aa)	266

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	4.9E-06	78	104
PF12874	zf-met	Zinc-finger of C2H2 type	1.4E-04	79	103

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 47	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|040700 MYKRGTRLNTSLTHSPPFYPFRVYNALLRSLRPLLSYLACLQPTQDHYEAVHSWCRQCDRFFANDHSRHEHYRQS SVHFYCAPCERLFRSESNLRAHRNSSVHQPRSVKCRGKGCDRTFVSVSAMILHLEGGKCVSGIDRTYVNQKVREY DRNNIITDPSRMLTGPSSQGESWYYATDRAWNGYAFECYLCHNTYRTLLALNQHLGSPRHQDKFYICPLDTCRTR FRTLSGLCQHIESQRCGIHKFRVVKDTMDSVLNGMNRLTL*
Coding	>AgabiH97\|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA
Transcript	>AgabiH97\|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA
Gene	>AgabiH97\|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGGTGCGTCC TACCCCGGTAACCAGCGACGCTACATTCGTGTCCTTATCCCTCATCCCCTCCAGTATACAATGCCTTACTGCGAT CGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACGTGAACAATTCGGCATCCCACAACATCTGC GATGAATGTGACATCGACTTTTCCGACTGGAGTGATTTGCAGGATCATTGGGTTGAAAGCCCATACCACTCTTAT TGTCAACCCTGTAACGAGCGTTTCGATGATGATGATGACCTAGAGGATCACTATGAAGCGGTACATTCTTGGTGC CGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCTTCTGTACACTTTTAC TGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGGTAAGCCTATCTATGACCCGCATACAT CTTTGATACTGATGAGTGTTCCTCTCCCAGCATCGCAATTCTTCTGTTCATCAGCCTCGTAGCGTCAAATGTCGT GGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATGATCCTTCACCTCGAAGGCGGCAAATGCGTCTCT GGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTATGATCGAAACAACATCATCACCGACCCATCTCGC ATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTACGCGACAGATCGTGCGTGGAACGGATACGCCTTT GAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCCCTTAACCAGCATCTCGGGAGCCCTCGCCACCAG GACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGGTTCAGAACTTTGAGCGGATTGTGTCAACATATC GAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAGGATACGATGGATTCGGTGCTTAACGGAATGAAC CGTTTGACCTTGTGA

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