Protein ID | AgabiH97|040700 |
Gene name | |
Location | scaffold_2:581561..582626 |
Strand | - |
Gene length (bp) | 1065 |
Transcript length (bp) | 798 |
Coding sequence length (bp) | 798 |
Protein length (aa) | 266 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 4.9E-06 | 78 | 104 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 1.4E-04 | 79 | 103 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 47 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|040700 MYKRGTRLNTSLTHSPPFYPFRVYNALLRSLRPLLSYLACLQPTQDHYEAVHSWCRQCDRFFANDHSRHEHYRQS SVHFYCAPCERLFRSESNLRAHRNSSVHQPRSVKCRGKGCDRTFVSVSAMILHLEGGKCVSGIDRTYVNQKVREY DRNNIITDPSRMLTGPSSQGESWYYATDRAWNGYAFECYLCHNTYRTLLALNQHLGSPRHQDKFYICPLDTCRTR FRTLSGLCQHIESQRCGIHKFRVVKDTMDSVLNGMNRLTL* |
Coding | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
Transcript | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
Gene | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGGTGCGTCC TACCCCGGTAACCAGCGACGCTACATTCGTGTCCTTATCCCTCATCCCCTCCAGTATACAATGCCTTACTGCGAT CGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACGTGAACAATTCGGCATCCCACAACATCTGC GATGAATGTGACATCGACTTTTCCGACTGGAGTGATTTGCAGGATCATTGGGTTGAAAGCCCATACCACTCTTAT TGTCAACCCTGTAACGAGCGTTTCGATGATGATGATGACCTAGAGGATCACTATGAAGCGGTACATTCTTGGTGC CGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCTTCTGTACACTTTTAC TGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGGTAAGCCTATCTATGACCCGCATACAT CTTTGATACTGATGAGTGTTCCTCTCCCAGCATCGCAATTCTTCTGTTCATCAGCCTCGTAGCGTCAAATGTCGT GGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATGATCCTTCACCTCGAAGGCGGCAAATGCGTCTCT GGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTATGATCGAAACAACATCATCACCGACCCATCTCGC ATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTACGCGACAGATCGTGCGTGGAACGGATACGCCTTT GAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCCCTTAACCAGCATCTCGGGAGCCCTCGCCACCAG GACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGGTTCAGAACTTTGAGCGGATTGTGTCAACATATC GAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAGGATACGATGGATTCGGTGCTTAACGGAATGAAC CGTTTGACCTTGTGA |