Protein ID | AgabiH97|040700 |
Gene name | |
Location | scaffold_2:581561..582626 |
Strand | - |
Gene length (bp) | 1065 |
Transcript length (bp) | 798 |
Coding sequence length (bp) | 798 |
Protein length (aa) | 266 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 4.9E-06 | 78 | 104 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 1.4E-04 | 79 | 103 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | 0.5009 | 0.5929 | 0.1756 | 0.03 | 0.1502 | 0.0109 | 0.1219 | 0.1892 | 0.0847 | 0.1002 |
Orthofinder run ID | 1 |
Orthogroup | 363 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|040700 MYKRGTRLNTSLTHSPPFYPFRVYNALLRSLRPLLSYLACLQPTQDHYEAVHSWCRQCDRFFANDHSRHEHYRQS SVHFYCAPCERLFRSESNLRAHRNSSVHQPRSVKCRGKGCDRTFVSVSAMILHLEGGKCVSGIDRTYVNQKVREY DRNNIITDPSRMLTGPSSQGESWYYATDRAWNGYAFECYLCHNTYRTLLALNQHLGSPRHQDKFYICPLDTCRTR FRTLSGLCQHIESQRCGIHKFRVVKDTMDSVLNGMNRLTL* |
Coding | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
Transcript | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGTATACAAT GCCTTACTGCGATCGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACAGGATCACTATGAAGCG GTACATTCTTGGTGCCGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCT TCTGTACACTTTTACTGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGCATCGCAATTCT TCTGTTCATCAGCCTCGTAGCGTCAAATGTCGTGGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATG ATCCTTCACCTCGAAGGCGGCAAATGCGTCTCTGGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTAT GATCGAAACAACATCATCACCGACCCATCTCGCATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTAC GCGACAGATCGTGCGTGGAACGGATACGCCTTTGAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCC CTTAACCAGCATCTCGGGAGCCCTCGCCACCAGGACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGG TTCAGAACTTTGAGCGGATTGTGTCAACATATCGAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAG GATACGATGGATTCGGTGCTTAACGGAATGAACCGTTTGACCTTGTGA |
Gene | >AgabiH97|040700 ATGTATAAAAGGGGTACGCGGCTCAATACCTCTTTGACTCACTCCCCCCCATTCTACCCCTTCCGCGGTGCGTCC TACCCCGGTAACCAGCGACGCTACATTCGTGTCCTTATCCCTCATCCCCTCCAGTATACAATGCCTTACTGCGAT CGTTGCGACCGCTACTTTCGTACCTGGCCTGCCTTCAACCAACACGTGAACAATTCGGCATCCCACAACATCTGC GATGAATGTGACATCGACTTTTCCGACTGGAGTGATTTGCAGGATCATTGGGTTGAAAGCCCATACCACTCTTAT TGTCAACCCTGTAACGAGCGTTTCGATGATGATGATGACCTAGAGGATCACTATGAAGCGGTACATTCTTGGTGC CGACAATGCGACCGATTCTTCGCGAATGATCATAGTCGCCACGAACATTACCGCCAATCTTCTGTACACTTTTAC TGTGCACCTTGCGAACGTTTGTTTCGGTCAGAAAGCAACCTTCGGGCGGTAAGCCTATCTATGACCCGCATACAT CTTTGATACTGATGAGTGTTCCTCTCCCAGCATCGCAATTCTTCTGTTCATCAGCCTCGTAGCGTCAAATGTCGT GGCAAGGGTTGTGATAGGACATTCGTCAGCGTTTCTGCCATGATCCTTCACCTCGAAGGCGGCAAATGCGTCTCT GGCATTGATCGCACTTATGTTAACCAGAAAGTCCGCGAGTATGATCGAAACAACATCATCACCGACCCATCTCGC ATGCTCACTGGGCCTAGCTCCCAAGGCGAATCCTGGTATTACGCGACAGATCGTGCGTGGAACGGATACGCCTTT GAGTGTTATCTGTGTCATAATACTTATCGCACCCTTCTGGCCCTTAACCAGCATCTCGGGAGCCCTCGCCACCAG GACAAGTTTTATATATGCCCTTTAGACACGTGCCGTACAAGGTTCAGAACTTTGAGCGGATTGTGTCAACATATC GAGAGTCAACGATGTGGTATTCACAAGTTCCGTGTTGTCAAGGATACGATGGATTCGGTGCTTAACGGAATGAAC CGTTTGACCTTGTGA |