Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040380
Gene name
Locationscaffold_2:495895..497236
Strand+
Gene length (bp)1341
Transcript length (bp)1221
Coding sequence length (bp)1221
Protein length (aa) 407

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF18376 MDD_C Mevalonate 5-diphosphate decarboxylase C-terminal domain 1.0E-70 196 388
PF00288 GHMP_kinases_N GHMP kinases N terminal domain 1.2E-05 107 165

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 1 406 3.0E-130
sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 3 403 3.0E-124
sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 1 403 2.0E-120
sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 7 403 1.0E-117
sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 1 405 4.0E-115
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Swissprot ID Swissprot Description Start End E-value
sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 1 406 3.0E-130
sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 3 403 3.0E-124
sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 1 403 2.0E-120
sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 7 403 1.0E-117
sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 1 405 4.0E-115
sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 7 406 1.0E-114
sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 6 406 1.0E-113
sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=1 SV=1 7 403 2.0E-113
sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 7 406 1.0E-110
sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 1 403 6.0E-110
sp|Q97UL5|DMD_SULSO Diphosphomevalonate decarboxylase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2989 PE=1 SV=1 6 329 2.0E-60
sp|D4GXZ3|PMD_HALVD Phosphomevalonate decarboxylase OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=mvaD PE=1 SV=1 5 353 4.0E-07
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GO

GO Term Description Terminal node
GO:0005524 ATP binding Yes
GO:0035639 purine ribonucleoside triphosphate binding No
GO:1901265 nucleoside phosphate binding No
GO:0097367 carbohydrate derivative binding No
GO:0036094 small molecule binding No
GO:0032553 ribonucleotide binding No
GO:0032559 adenyl ribonucleotide binding No
GO:0030554 adenyl nucleotide binding No
GO:0043168 anion binding No
GO:0017076 purine nucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No
GO:0000166 nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040380
MTVYQATASAPVNIACIKYWGKRDTKLILPTNSSLSVTLDQDHLRSTTTSRADPSFTNDRLWLNGKEEEIKEGGR
LWTCIREMKRLRKEEVEDKSSSEPKLSTYNVHICSHNNFPTAAGLASSASGFAALVSSLSHLYSLPVSSSTLSLI
ARQGSGSACRSLFGGFVAWQMGSNPSGSDSLALQIAPQSHWPDIHALICIVSDDKKGTSSTSGMQRTVETSSLLH
HRINTVVPHRMETISKAIQEKDFDTFAKVTMADSNQFHAVALDTEPPIFYLNDVSRAIIALVVEYNRLGVEEGKG
YRAAYTYDAGPNAVIYAKKENVKEILELVVEYFPQREGAFKDAFGLFGGGGKVGGKLPMGFNENVAKRFEVGAVK
GLIHTRVGDGPRKLGDGEGLLNDEGLPKSLA*
Coding >AgabiH97|040380
ATGACCGTTTACCAAGCTACTGCATCTGCACCTGTAAACATTGCCTGCATCAAATATTGGGGCAAAAGGGATACA
AAATTGATCTTGCCCACAAACTCTTCGCTTTCTGTTACCCTTGACCAAGATCATTTACGATCTACGACTACTTCA
CGAGCGGACCCATCGTTCACTAATGATCGCTTGTGGCTTAATGGTAAGGAGGAGGAGATTAAGGAGGGTGGGAGG
TTGTGGACTTGTATAAGGGAGATGAAGAGGTTGAGGAAGGAGGAAGTTGAAGATAAAAGTTCTAGTGAACCCAAG
TTATCAACATACAATGTTCACATATGTTCACACAACAACTTCCCCACTGCCGCTGGACTCGCATCTTCCGCATCC
GGATTCGCAGCTCTAGTCTCCTCACTCTCGCATCTCTATTCCCTTCCGGTTTCCTCATCCACTCTTTCTTTAATC
GCTCGTCAAGGTTCCGGTTCCGCCTGTCGTTCCCTTTTCGGTGGTTTTGTAGCTTGGCAAATGGGTTCAAACCCT
TCTGGTTCCGATTCCCTCGCACTACAAATCGCACCTCAATCTCATTGGCCTGATATTCATGCTCTTATATGTATA
GTCTCTGATGACAAGAAAGGGACATCTAGTACGAGTGGTATGCAACGTACAGTCGAAACTTCATCTTTACTACAC
CATCGTATCAACACCGTCGTTCCTCATCGTATGGAAACGATTTCCAAAGCCATTCAAGAAAAAGATTTTGATACG
TTTGCGAAAGTGACGATGGCGGATTCGAATCAATTTCATGCTGTGGCTTTGGATACGGAACCCCCGATTTTTTAT
TTGAATGATGTGAGTAGGGCTATCATTGCTTTGGTGGTGGAGTATAATCGATTGGGGGTTGAGGAGGGGAAAGGG
TATAGGGCGGCGTATACGTATGATGCTGGACCGAATGCGGTTATATATGCGAAGAAGGAAAATGTGAAAGAGATT
TTGGAGTTGGTGGTTGAGTATTTTCCGCAAAGGGAGGGTGCGTTTAAAGATGCGTTTGGATTGTTTGGAGGGGGA
GGAAAGGTGGGTGGGAAATTGCCGATGGGATTTAATGAAAATGTGGCGAAGAGGTTTGAGGTGGGTGCGGTTAAA
GGATTGATTCATACTCGTGTTGGGGATGGACCGAGGAAATTGGGAGATGGGGAAGGGTTGTTGAATGATGAAGGT
TTGCCTAAAAGTTTGGCGTAG
Transcript >AgabiH97|040380
ATGACCGTTTACCAAGCTACTGCATCTGCACCTGTAAACATTGCCTGCATCAAATATTGGGGCAAAAGGGATACA
AAATTGATCTTGCCCACAAACTCTTCGCTTTCTGTTACCCTTGACCAAGATCATTTACGATCTACGACTACTTCA
CGAGCGGACCCATCGTTCACTAATGATCGCTTGTGGCTTAATGGTAAGGAGGAGGAGATTAAGGAGGGTGGGAGG
TTGTGGACTTGTATAAGGGAGATGAAGAGGTTGAGGAAGGAGGAAGTTGAAGATAAAAGTTCTAGTGAACCCAAG
TTATCAACATACAATGTTCACATATGTTCACACAACAACTTCCCCACTGCCGCTGGACTCGCATCTTCCGCATCC
GGATTCGCAGCTCTAGTCTCCTCACTCTCGCATCTCTATTCCCTTCCGGTTTCCTCATCCACTCTTTCTTTAATC
GCTCGTCAAGGTTCCGGTTCCGCCTGTCGTTCCCTTTTCGGTGGTTTTGTAGCTTGGCAAATGGGTTCAAACCCT
TCTGGTTCCGATTCCCTCGCACTACAAATCGCACCTCAATCTCATTGGCCTGATATTCATGCTCTTATATGTATA
GTCTCTGATGACAAGAAAGGGACATCTAGTACGAGTGGTATGCAACGTACAGTCGAAACTTCATCTTTACTACAC
CATCGTATCAACACCGTCGTTCCTCATCGTATGGAAACGATTTCCAAAGCCATTCAAGAAAAAGATTTTGATACG
TTTGCGAAAGTGACGATGGCGGATTCGAATCAATTTCATGCTGTGGCTTTGGATACGGAACCCCCGATTTTTTAT
TTGAATGATGTGAGTAGGGCTATCATTGCTTTGGTGGTGGAGTATAATCGATTGGGGGTTGAGGAGGGGAAAGGG
TATAGGGCGGCGTATACGTATGATGCTGGACCGAATGCGGTTATATATGCGAAGAAGGAAAATGTGAAAGAGATT
TTGGAGTTGGTGGTTGAGTATTTTCCGCAAAGGGAGGGTGCGTTTAAAGATGCGTTTGGATTGTTTGGAGGGGGA
GGAAAGGTGGGTGGGAAATTGCCGATGGGATTTAATGAAAATGTGGCGAAGAGGTTTGAGGTGGGTGCGGTTAAA
GGATTGATTCATACTCGTGTTGGGGATGGACCGAGGAAATTGGGAGATGGGGAAGGGTTGTTGAATGATGAAGGT
TTGCCTAAAAGTTTGGCGTAG
Gene >AgabiH97|040380
ATGACCGTTTACCAAGCTACTGCATCTGCACCTGTAAACATTGCCTGCATCAAGTAAGTTGGACTGTTTCCTGAC
TCAGTCGATAGAACTGATTTACTGACTATCGGCATATCGCATATCAGATATTGGGGCAAAAGGGATACAAAATTG
ATCTTGCCCACAAACTCTTCGCTTTCTGTTACCCTTGACCAAGATCATTTACGATCTACGACTACTTCACGAGCG
GACCCATCGTTCACTAATGATCGCTTGTGGCTTAATGGTAAGGAGGAGGAGATTAAGGAGGGTGGGAGGTTGTGG
ACTTGTATAAGGGAGATGAAGAGGTTGAGGAAGGAGGAAGTTGAAGATAAAAGTTCTAGTGAACCCAAGGTTAAT
CCACTCTCCATTTTTTAAATTCATGCTGACACGAATACAAAAAAGTTATCAACATACAATGTTCACATATGTTCA
CACAACAACTTCCCCACTGCCGCTGGACTCGCATCTTCCGCATCCGGATTCGCAGCTCTAGTCTCCTCACTCTCG
CATCTCTATTCCCTTCCGGTTTCCTCATCCACTCTTTCTTTAATCGCTCGTCAAGGTTCCGGTTCCGCCTGTCGT
TCCCTTTTCGGTGGTTTTGTAGCTTGGCAAATGGGTTCAAACCCTTCTGGTTCCGATTCCCTCGCACTACAAATC
GCACCTCAATCTCATTGGCCTGATATTCATGCTCTTATATGTATAGTCTCTGATGACAAGAAAGGGACATCTAGT
ACGAGTGGTATGCAACGTACAGTCGAAACTTCATCTTTACTACACCATCGTATCAACACCGTCGTTCCTCATCGT
ATGGAAACGATTTCCAAAGCCATTCAAGAAAAAGATTTTGATACGTTTGCGAAAGTGACGATGGCGGATTCGAAT
CAATTTCATGCTGTGGCTTTGGATACGGAACCCCCGATTTTTTATTTGAATGATGTGAGTAGGGCTATCATTGCT
TTGGTGGTGGAGTATAATCGATTGGGGGTTGAGGAGGGGAAAGGGTATAGGGCGGCGTATACGTATGATGCTGGA
CCGAATGCGGTTATATATGCGAAGAAGGAAAATGTGAAAGAGATTTTGGAGTTGGTGGTTGAGTATTTTCCGCAA
AGGGAGGGTGCGTTTAAAGATGCGTTTGGATTGTTTGGAGGGGGAGGAAAGGTGGGTGGGAAATTGCCGATGGGA
TTTAATGAAAATGTGGCGAAGAGGTTTGAGGTGGGTGCGGTTAAAGGATTGATTCATACTCGTGTTGGGGATGGA
CCGAGGAAATTGGGAGATGGGGAAGGGTTGTTGAATGATGAAGGTTTGCCTAAAAGTTTGGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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