© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|040320 |
| Gene name | |
| Location | scaffold_2:477513..478724 |
| Strand | - |
| Gene length (bp) | 1211 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 152 | 174 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 29.07 | 15.99 | 42.15 |
| Initials | Initials knots | 25.90 | 14.01 | 37.78 |
| Pileal_Stipeal_center | Stage I stipe center | 19.16 | 9.89 | 28.43 |
| Pileal_Stipeal_shell | Stage I stipe shell | 28.30 | 15.30 | 41.30 |
| DIF_stipe_center | Stage II stipe center | 21.26 | 11.19 | 31.32 |
| DIF_stipe_shell | Stage II stipe shell | 14.30 | 7.15 | 21.46 |
| DIF_stipe_skin | Stage II stipe skin | 14.76 | 7.37 | 22.16 |
| DIF_cap_skin | Stage II cap skin | 27.06 | 14.66 | 39.47 |
| DIF_cap_tissue | Stage II cap tissue | 36.83 | 20.82 | 52.84 |
| DIF_gill_tissue | Stage II gill tissue | 33.18 | 18.46 | 47.90 |
| YFB_stipe_center | Young fruiting body stipe center | 16.09 | 8.03 | 24.14 |
| YFB_stipe_shell | Young fruiting body stipe shell | 14.53 | 7.26 | 21.81 |
| YFB_stipe_skin | Young fruiting body stipe skin | 11.87 | 5.78 | 17.96 |
| YFB_cap_skin | Young fruiting body cap skin | 11.10 | 5.35 | 16.85 |
| YFB_cap_tissue | Young fruiting body cap tissue | 23.18 | 12.30 | 34.05 |
| YFB_gill_tissue | Young fruiting body gill tissue | 15.47 | 7.81 | 23.13 |
| YFB_veil | Young fruiting body veil | 19.54 | 10.20 | 28.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.790488 | no |
| Casing | YFB_stipe_center | 0.068640 | no |
| Casing | YFB_stipe_shell | 0.028675 | yes |
| Casing | YFB_stipe_skin | 0.003365 | yes |
| Casing | YFB_cap_skin | 0.002084 | yes |
| Casing | YFB_cap_tissue | 0.601584 | no |
| Casing | YFB_gill_tissue | 0.040723 | yes |
| Casing | YFB_veil | 0.263795 | no |
| Casing | Initials | 0.825138 | no |
| Casing | Pileal_Stipeal_center | 0.247581 | no |
| Casing | Pileal_Stipeal_shell | 0.964775 | no |
| Casing | DIF_stipe_center | 0.406997 | no |
| Casing | DIF_stipe_shell | 0.021322 | yes |
| Casing | DIF_stipe_skin | 0.030372 | yes |
| Casing | DIF_cap_skin | 0.900117 | no |
| Casing | DIF_cap_tissue | 0.550526 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.017226 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.006742 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.001140 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.323876 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.009773 | yes |
| DIF_gill_tissue | YFB_veil | 0.100249 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.869625 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.485285 | no |
| YFB_stipe_center | YFB_cap_skin | 0.378147 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.353531 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.954661 | no |
| YFB_stipe_center | YFB_veil | 0.694456 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.688376 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.570149 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.199255 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.924260 | no |
| YFB_stipe_shell | YFB_veil | 0.490356 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.919172 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.040947 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.547045 | no |
| YFB_stipe_skin | YFB_veil | 0.154391 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.022369 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.434333 | no |
| YFB_cap_skin | YFB_veil | 0.106659 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.267262 | no |
| YFB_cap_tissue | YFB_veil | 0.729074 | no |
| YFB_gill_tissue | YFB_veil | 0.601101 | no |
| Initials | DIF_gill_tissue | 0.538350 | no |
| Initials | YFB_stipe_center | 0.173213 | no |
| Initials | YFB_stipe_shell | 0.080179 | no |
| Initials | YFB_stipe_skin | 0.011968 | yes |
| Initials | YFB_cap_skin | 0.009446 | yes |
| Initials | YFB_cap_tissue | 0.840653 | no |
| Initials | YFB_gill_tissue | 0.120972 | no |
| Initials | YFB_veil | 0.484539 | no |
| Initials | Pileal_Stipeal_center | 0.449640 | no |
| Initials | Pileal_Stipeal_shell | 0.877533 | no |
| Initials | DIF_stipe_center | 0.663271 | no |
| Initials | DIF_stipe_shell | 0.068081 | no |
| Initials | DIF_stipe_skin | 0.094323 | no |
| Initials | DIF_cap_skin | 0.943101 | no |
| Initials | DIF_cap_tissue | 0.311558 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.092165 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.734338 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.528175 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.184329 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.135591 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.700081 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.654695 | no |
| Pileal_Stipeal_center | YFB_veil | 0.977071 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.289965 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.859259 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.496016 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.569705 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.365398 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.033444 | yes |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.740753 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.091998 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.041824 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.005302 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.003765 | yes |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.668205 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.058926 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.320555 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.472029 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.032978 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.046327 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.941882 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.501820 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.176682 | no |
| DIF_stipe_center | YFB_stipe_center | 0.513267 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.317155 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.075908 | no |
| DIF_stipe_center | YFB_cap_skin | 0.056760 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.884771 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.428971 | no |
| DIF_stipe_center | YFB_veil | 0.887400 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.291240 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.354048 | no |
| DIF_stipe_center | DIF_cap_skin | 0.567498 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.067896 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.006387 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.843211 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.981565 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.718377 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.597930 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.176182 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.901232 | no |
| DIF_stipe_shell | YFB_veil | 0.455342 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.965732 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.050706 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.001625 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.008121 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.892019 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.981129 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.653857 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.536081 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.218856 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.943362 | no |
| DIF_stipe_skin | YFB_veil | 0.516827 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.065086 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.000613 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.639885 | no |
| DIF_cap_skin | YFB_stipe_center | 0.121880 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.056958 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.009446 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.004928 | yes |
| DIF_cap_skin | YFB_cap_tissue | 0.759934 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.085220 | no |
| DIF_cap_skin | YFB_veil | 0.395351 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.400613 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.842540 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.005302 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.002525 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_tissue | 0.157303 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.001625 | yes |
| DIF_cap_tissue | YFB_veil | 0.036683 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|040320 MYSMPPSTISSGPAALFVLLQLQAWTARASLIRRQDGDSDSDSDSDSDSDSESCQNNVCVKESCSRGVCTTVTST KGVKGGAAGPTPTNGGASGTAGVTQTPPPAPAPDATSHTKGHQQSSQSSTDSLSAGPSQQTNASGLSNNSDGLSK GGIAGIVLAIAFLIGLLIMCLTAYRNRRRRAQTKPQGFVPATFLNGPPATHSNTPNNNNEMSPVEFANRSPVTAA TRMSRNLRGSADNNYNTSPTSPALAPLLPGIASGYEGRERPLPPSRGINQHNHTRSLSRGDNGSILTSPYSDHHH TSIFVDAPLPPLPHEADRAGGSSIPAGTLHSDIRAYQKALEADNTKRTEAAMASQEPSRDPPPSYFPMR* |
| Coding | >AgabiH97|040320 ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG ACCGCTCGTGCCAGCCTTATTCGTCGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGAC AGCGAATCTTGTCAAAACAACGTTTGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACC AAAGGTGTCAAAGGTGGTGCAGCCGGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAG ACCCCACCTCCAGCTCCAGCCCCAGATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACG GACAGTCTATCAGCGGGACCTTCTCAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAA GGTGGAATTGCCGGTATAGTTCTTGCCATCGCGTTTCTTATTGGTCTGTTAATTATGTGCCTCACTGCGTATCGC AATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTACTTTCCTCAATGGGCCTCCTGCTACT CATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCGCAAACAGATCCCCTGTTACAGCGGCC ACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACACTAGTCCGACATCACCCGCGCTTGCA CCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTCTACCTCCGAGTCGTGGCATCAACCAA CACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCACCTCACCCTATTCTGATCATCATCAT ACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTGATCGTGCGGGTGGAAGTAGCATTCCC GCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAGCCGACAACACTAAACGAACAGAGGCT GCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCCCTATGCGATGA |
| Transcript | >AgabiH97|040320 ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG ACCGCTCGTGCCAGCCTTATTCGTCGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGAC AGCGAATCTTGTCAAAACAACGTTTGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACC AAAGGTGTCAAAGGTGGTGCAGCCGGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAG ACCCCACCTCCAGCTCCAGCCCCAGATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACG GACAGTCTATCAGCGGGACCTTCTCAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAA GGTGGAATTGCCGGTATAGTTCTTGCCATCGCGTTTCTTATTGGTCTGTTAATTATGTGCCTCACTGCGTATCGC AATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTACTTTCCTCAATGGGCCTCCTGCTACT CATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCGCAAACAGATCCCCTGTTACAGCGGCC ACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACACTAGTCCGACATCACCCGCGCTTGCA CCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTCTACCTCCGAGTCGTGGCATCAACCAA CACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCACCTCACCCTATTCTGATCATCATCAT ACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTGATCGTGCGGGTGGAAGTAGCATTCCC GCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAGCCGACAACACTAAACGAACAGAGGCT GCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCCCTATGCGATGA |
| Gene | >AgabiH97|040320 ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG ACCGCTCGTGCCAGCCTTATTCGGTGCGTTAATACAACCACGCAGTATTACGCCAACTAAAAATTTTCGATAAGT CGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGACAGCGAATCTTGTCAAAACAACGTT TGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACCAAAGGTGTCAAAGGTGGTGCAGCC GGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAGACCCCACCTCCAGCTCCAGCCCCA GATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACGGACAGTCTATCAGCGGGACCTTCT CAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAAGGTGGAATTGCCGGTATAGTTCTT GCCATCGGTGAGTATTTCTCCCCTTAACGCTGAGTTCTACTTCATCTCGCCACTCAGCGTTTCTTATTGGTCTGT TAATTATGTGCCTCACTGCGTATCGCAATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTA CTTTCCTCAATGGGCCTCCTGCTACTCATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCG CAAACAGATCCCCTGTTACAGCGGCCACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACA CTAGTCCGACATCACCCGCGCTTGCACCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTC TACCTCCGAGTCGTGGCATCAACCAACACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCA CCTCACCCTATTCTGATCATCATCATACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTG ATCGTGCGGGTGGAAGTAGCATTCCCGCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAG CCGACAACACTAAACGAACAGAGGCTGCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCC CTATGCGATGA |