Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040320
Gene name
Locationscaffold_2:477513..478724
Strand-
Gene length (bp)1211
Transcript length (bp)1110
Coding sequence length (bp)1110
Protein length (aa) 370

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 30 0.45

Transmembrane Domains

Domain # Start End Length
1 152 174 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040320
MYSMPPSTISSGPAALFVLLQLQAWTARASLIRRQDGDSDSDSDSDSDSDSESCQNNVCVKESCSRGVCTTVTST
KGVKGGAAGPTPTNGGASGTAGVTQTPPPAPAPDATSHTKGHQQSSQSSTDSLSAGPSQQTNASGLSNNSDGLSK
GGIAGIVLAIAFLIGLLIMCLTAYRNRRRRAQTKPQGFVPATFLNGPPATHSNTPNNNNEMSPVEFANRSPVTAA
TRMSRNLRGSADNNYNTSPTSPALAPLLPGIASGYEGRERPLPPSRGINQHNHTRSLSRGDNGSILTSPYSDHHH
TSIFVDAPLPPLPHEADRAGGSSIPAGTLHSDIRAYQKALEADNTKRTEAAMASQEPSRDPPPSYFPMR*
Coding >AgabiH97|040320
ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG
ACCGCTCGTGCCAGCCTTATTCGTCGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGAC
AGCGAATCTTGTCAAAACAACGTTTGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACC
AAAGGTGTCAAAGGTGGTGCAGCCGGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAG
ACCCCACCTCCAGCTCCAGCCCCAGATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACG
GACAGTCTATCAGCGGGACCTTCTCAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAA
GGTGGAATTGCCGGTATAGTTCTTGCCATCGCGTTTCTTATTGGTCTGTTAATTATGTGCCTCACTGCGTATCGC
AATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTACTTTCCTCAATGGGCCTCCTGCTACT
CATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCGCAAACAGATCCCCTGTTACAGCGGCC
ACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACACTAGTCCGACATCACCCGCGCTTGCA
CCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTCTACCTCCGAGTCGTGGCATCAACCAA
CACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCACCTCACCCTATTCTGATCATCATCAT
ACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTGATCGTGCGGGTGGAAGTAGCATTCCC
GCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAGCCGACAACACTAAACGAACAGAGGCT
GCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCCCTATGCGATGA
Transcript >AgabiH97|040320
ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG
ACCGCTCGTGCCAGCCTTATTCGTCGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGAC
AGCGAATCTTGTCAAAACAACGTTTGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACC
AAAGGTGTCAAAGGTGGTGCAGCCGGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAG
ACCCCACCTCCAGCTCCAGCCCCAGATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACG
GACAGTCTATCAGCGGGACCTTCTCAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAA
GGTGGAATTGCCGGTATAGTTCTTGCCATCGCGTTTCTTATTGGTCTGTTAATTATGTGCCTCACTGCGTATCGC
AATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTACTTTCCTCAATGGGCCTCCTGCTACT
CATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCGCAAACAGATCCCCTGTTACAGCGGCC
ACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACACTAGTCCGACATCACCCGCGCTTGCA
CCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTCTACCTCCGAGTCGTGGCATCAACCAA
CACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCACCTCACCCTATTCTGATCATCATCAT
ACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTGATCGTGCGGGTGGAAGTAGCATTCCC
GCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAGCCGACAACACTAAACGAACAGAGGCT
GCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCCCTATGCGATGA
Gene >AgabiH97|040320
ATGTACTCAATGCCGCCCTCCACAATCTCCTCGGGACCCGCAGCTTTGTTCGTGCTGTTGCAACTCCAAGCATGG
ACCGCTCGTGCCAGCCTTATTCGGTGCGTTAATACAACCACGCAGTATTACGCCAACTAAAAATTTTCGATAAGT
CGCCAAGATGGTGATTCCGACTCCGACAGTGATTCAGACTCGGACTCGGACAGCGAATCTTGTCAAAACAACGTT
TGTGTTAAAGAATCGTGCAGTCGTGGTGTCTGTACAACGGTTACCAGTACCAAAGGTGTCAAAGGTGGTGCAGCC
GGTCCAACCCCAACGAATGGGGGGGCTTCGGGAACGGCTGGGGTAACGCAGACCCCACCTCCAGCTCCAGCCCCA
GATGCTACGTCCCATACAAAAGGCCATCAGCAAAGTTCACAAAGTTCAACGGACAGTCTATCAGCGGGACCTTCT
CAACAAACTAACGCTTCGGGTCTCTCCAATAACTCCGATGGTCTCAGCAAAGGTGGAATTGCCGGTATAGTTCTT
GCCATCGGTGAGTATTTCTCCCCTTAACGCTGAGTTCTACTTCATCTCGCCACTCAGCGTTTCTTATTGGTCTGT
TAATTATGTGCCTCACTGCGTATCGCAATCGCCGAAGACGAGCTCAAACAAAACCCCAAGGTTTCGTTCCTGCTA
CTTTCCTCAATGGGCCTCCTGCTACTCATAGCAACACACCGAATAACAATAATGAGATGTCCCCAGTTGAGTTCG
CAAACAGATCCCCTGTTACAGCGGCCACGCGCATGAGCCGTAACCTTCGTGGCAGCGCCGATAACAACTACAACA
CTAGTCCGACATCACCCGCGCTTGCACCTCTCTTACCTGGCATAGCATCGGGTTATGAGGGAAGAGAAAGACCTC
TACCTCCGAGTCGTGGCATCAACCAACACAACCACACTCGTTCACTCTCGCGAGGCGATAACGGTTCAATCCTCA
CCTCACCCTATTCTGATCATCATCATACGAGCATCTTTGTTGACGCACCTCTACCACCATTACCCCACGAAGCTG
ATCGTGCGGGTGGAAGTAGCATTCCCGCCGGAACACTTCATTCTGACATACGAGCGTACCAGAAAGCTTTAGAAG
CCGACAACACTAAACGAACAGAGGCTGCCATGGCCTCACAAGAACCCAGTAGAGATCCTCCGCCATCATACTTCC
CTATGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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