Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040250
Gene name
Locationscaffold_2:461001..461449
Strand+
Gene length (bp)448
Transcript length (bp)345
Coding sequence length (bp)345
Protein length (aa) 115

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09649 CHZ Histone chaperone domain CHZ 5.7E-08 62 91

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|A8N7N4|CHZ1_COPC7 Histone H2A.Z-specific chaperone CHZ1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=CHZ1 PE=3 SV=1 1 113 3.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 56 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040250
MSSNMTDPASTPTVDPVSPDSKGKGKAPVQDQPMNENVENADEGDEEEEEADDDDEIEEEEEVEESYEEIDPTAI
VSGRRTRAPVDYTSKEAFEKAGLKPDDADDDEDEDVHMG*
Coding >AgabiH97|040250
ATGTCCTCCAACATGACTGACCCTGCCTCCACACCCACCGTCGACCCCGTGTCTCCCGACTCAAAGGGAAAGGGC
AAGGCACCGGTTCAGGACCAGCCTATGAATGAAAATGTCGAAAACGCCGACGAAGGCGACGAAGAAGAAGAAGAA
GCAGACGACGACGATGAAATAGAAGAGGAGGAAGAGGTCGAGGAAAGCTACGAAGAAATAGACCCCACTGCCATC
GTTTCTGGTCGTAGGACCCGTGCCCCCGTTGATTATACATCAAAGGAAGCCTTTGAAAAAGCAGGTCTCAAACCT
GACGACGCAGATGATGATGAAGATGAAGACGTTCATATGGGTTGA
Transcript >AgabiH97|040250
ATGTCCTCCAACATGACTGACCCTGCCTCCACACCCACCGTCGACCCCGTGTCTCCCGACTCAAAGGGAAAGGGC
AAGGCACCGGTTCAGGACCAGCCTATGAATGAAAATGTCGAAAACGCCGACGAAGGCGACGAAGAAGAAGAAGAA
GCAGACGACGACGATGAAATAGAAGAGGAGGAAGAGGTCGAGGAAAGCTACGAAGAAATAGACCCCACTGCCATC
GTTTCTGGTCGTAGGACCCGTGCCCCCGTTGATTATACATCAAAGGAAGCCTTTGAAAAAGCAGGTCTCAAACCT
GACGACGCAGATGATGATGAAGATGAAGACGTTCATATGGGTTGA
Gene >AgabiH97|040250
ATGTCCTCCAACATGACTGACCCTGCCTCGTACGTCCTCTCTCTCGTCTCTCGTGCTCATGGCTGACGCGTAGTC
CAACAGCACACCCACCGTCGACCCCGTGTCTCCCGACTCAAAGGGAAAGGGCAAGGCACCGGTTCAGGACCAGCC
TATGAATGAAAATGTCGAAAACGCCGACGAAGGCGACGAAGAAGAAGAAGAAGCAGACGACGACGATGAAATAGA
AGAGGAGGAAGAGGTCGAGGTCGGTCGACGCGTCTTTTCTCCTTCCCTTCGGTCACTGATCCCATCATAGGAAAG
CTACGAAGAAATAGACCCCACTGCCATCGTTTCTGGTCGTAGGACCCGTGCCCCCGTTGATTATACATCAAAGGA
AGCCTTTGAAAAAGCAGGTCTCAAACCTGACGACGCAGATGATGATGAAGATGAAGACGTTCATATGGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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