Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040120
Gene name
Locationscaffold_2:429130..430450
Strand+
Gene length (bp)1320
Transcript length (bp)1122
Coding sequence length (bp)1122
Protein length (aa) 374

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04032 Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain 2.4E-22 103 224

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5TM57|RPP21_MACMU Ribonuclease P protein subunit p21 OS=Macaca mulatta GN=RPP21 PE=3 SV=1 95 245 7.0E-11
sp|Q9H633|RPP21_HUMAN Ribonuclease P protein subunit p21 OS=Homo sapiens GN=RPP21 PE=1 SV=1 95 248 9.0E-11
sp|Q8R040|RPP21_MOUSE Ribonuclease P protein subunit p21 OS=Mus musculus GN=Rpp21 PE=1 SV=2 161 262 4.0E-10
sp|Q9Y813|RPR2_SCHPO Ribonuclease P protein subunit rpr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpr2 PE=3 SV=1 161 229 4.0E-09
sp|Q5JEC9|RNP4_THEKO Ribonuclease P protein component 4 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rnp4 PE=3 SV=1 160 252 4.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|Q5TM57|RPP21_MACMU Ribonuclease P protein subunit p21 OS=Macaca mulatta GN=RPP21 PE=3 SV=1 95 245 7.0E-11
sp|Q9H633|RPP21_HUMAN Ribonuclease P protein subunit p21 OS=Homo sapiens GN=RPP21 PE=1 SV=1 95 248 9.0E-11
sp|Q8R040|RPP21_MOUSE Ribonuclease P protein subunit p21 OS=Mus musculus GN=Rpp21 PE=1 SV=2 161 262 4.0E-10
sp|Q9Y813|RPR2_SCHPO Ribonuclease P protein subunit rpr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpr2 PE=3 SV=1 161 229 4.0E-09
sp|Q5JEC9|RNP4_THEKO Ribonuclease P protein component 4 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rnp4 PE=3 SV=1 160 252 4.0E-07
sp|Q12VV9|RNP4_METBU Ribonuclease P protein component 4 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rnp4 PE=3 SV=1 165 230 1.0E-06
sp|Q2FTK3|RNP4_METHJ Ribonuclease P protein component 4 OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rnp4 PE=3 SV=1 166 234 2.0E-06
sp|Q8TGY1|RNP4_METKA Ribonuclease P protein component 4 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rnp4 PE=3 SV=1 160 234 2.0E-06
sp|Q9V166|RNP4_PYRAB Ribonuclease P protein component 4 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp4 PE=3 SV=1 160 230 4.0E-06
sp|Q8U0H6|RNP4_PYRFU Ribonuclease P protein component 4 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rnp4 PE=1 SV=1 160 230 6.0E-06
sp|O59248|RNP4_PYRHO Ribonuclease P protein component 4 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnp4 PE=1 SV=1 160 233 8.0E-06
sp|C6A4A4|RNP4_THESM Ribonuclease P protein component 4 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rnp4 PE=3 SV=1 160 230 8.0E-06
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GO

GO Term Description Terminal node
GO:0006396 RNA processing Yes
GO:0008152 metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0043170 macromolecule metabolic process No
GO:0071704 organic substance metabolic process No
GO:0009987 cellular process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040120
MTAERRTDYVEAVKPTTMSTWHYITLLQTRANIRAVRHQVSPVIFLKKKGSSVVVFRSRHPVTPLYLKAVTMGKN
DNKKSATGGKGVNLAGINTVPNRDIMQRMNFLWQASVLLGGSGVGDTGTGTSTSRGDGASEVKGNSVESGMKTKK
VKTKKVNGSDLARMYVRTMNVVGQRTTTKMDPSVKRTICKGCSSVLIPGISARIRNRPSRQHEHLMIYTCLTCNT
SRRIPAPRNGVIASPEARLGIGATATEIIDTSAENVQRLVQSSNPSNPHPIRQQQSQHHLEEQLGDKKDDIEMNE
QQDHHTKRNIIDPREDEKTKSLTKQKKTKKKKKKKLPTIVPTPREPPLFSRKDAGHVVYRSGEVIDMDGVYCI*
Coding >AgabiH97|040120
ATGACTGCGGAGCGCAGGACAGACTACGTGGAAGCCGTGAAGCCAACCACAATGTCGACGTGGCATTATATAACA
CTTCTCCAAACACGCGCAAATATCAGGGCTGTGAGGCACCAGGTTTCCCCGGTCATCTTTCTCAAGAAAAAAGGG
TCATCAGTGGTTGTTTTCCGGTCCCGACACCCTGTGACACCCCTCTATCTCAAGGCGGTTACGATGGGAAAGAAT
GATAACAAGAAAAGTGCCACTGGAGGGAAAGGCGTCAATCTTGCGGGTATCAATACTGTTCCGAATAGAGATATC
ATGCAGCGGATGAATTTTTTATGGCAGGCTAGTGTATTGCTTGGAGGGAGTGGCGTTGGTGATACTGGTACTGGT
ACTAGTACTAGTCGTGGCGATGGCGCCAGTGAAGTGAAGGGTAATAGTGTTGAGAGCGGTATGAAGACAAAGAAG
GTGAAGACGAAAAAGGTGAATGGATCTGATTTGGCCAGGATGTATGTGAGGACGATGAACGTCGTTGGACAAAGA
ACCACCACCAAAATGGACCCAAGCGTAAAGCGTACTATATGTAAAGGTTGCTCAAGCGTCCTCATTCCAGGTATT
TCTGCTCGAATTCGCAATCGACCGAGTCGACAACACGAACATCTGATGATATATACATGCTTAACATGCAATACT
TCAAGAAGGATTCCCGCACCTCGAAATGGCGTGATCGCCTCTCCTGAAGCGAGACTTGGAATTGGTGCTACGGCT
ACCGAAATTATCGACACTTCGGCAGAGAATGTCCAGCGACTGGTACAATCGTCGAATCCTTCTAATCCTCATCCT
ATACGACAGCAGCAATCACAACACCATTTGGAGGAACAACTCGGCGATAAGAAGGATGATATCGAAATGAACGAA
CAACAGGATCATCATACTAAGAGGAATATCATTGATCCACGGGAAGATGAGAAGACCAAATCACTGACGAAGCAA
AAGAAGACTAAAAAGAAGAAGAAGAAGAAATTGCCCACCATAGTACCAACACCTCGTGAGCCACCATTATTCTCC
AGAAAAGATGCGGGGCATGTGGTTTATAGGAGTGGAGAAGTTATTGATATGGATGGCGTATACTGTATATGA
Transcript >AgabiH97|040120
ATGACTGCGGAGCGCAGGACAGACTACGTGGAAGCCGTGAAGCCAACCACAATGTCGACGTGGCATTATATAACA
CTTCTCCAAACACGCGCAAATATCAGGGCTGTGAGGCACCAGGTTTCCCCGGTCATCTTTCTCAAGAAAAAAGGG
TCATCAGTGGTTGTTTTCCGGTCCCGACACCCTGTGACACCCCTCTATCTCAAGGCGGTTACGATGGGAAAGAAT
GATAACAAGAAAAGTGCCACTGGAGGGAAAGGCGTCAATCTTGCGGGTATCAATACTGTTCCGAATAGAGATATC
ATGCAGCGGATGAATTTTTTATGGCAGGCTAGTGTATTGCTTGGAGGGAGTGGCGTTGGTGATACTGGTACTGGT
ACTAGTACTAGTCGTGGCGATGGCGCCAGTGAAGTGAAGGGTAATAGTGTTGAGAGCGGTATGAAGACAAAGAAG
GTGAAGACGAAAAAGGTGAATGGATCTGATTTGGCCAGGATGTATGTGAGGACGATGAACGTCGTTGGACAAAGA
ACCACCACCAAAATGGACCCAAGCGTAAAGCGTACTATATGTAAAGGTTGCTCAAGCGTCCTCATTCCAGGTATT
TCTGCTCGAATTCGCAATCGACCGAGTCGACAACACGAACATCTGATGATATATACATGCTTAACATGCAATACT
TCAAGAAGGATTCCCGCACCTCGAAATGGCGTGATCGCCTCTCCTGAAGCGAGACTTGGAATTGGTGCTACGGCT
ACCGAAATTATCGACACTTCGGCAGAGAATGTCCAGCGACTGGTACAATCGTCGAATCCTTCTAATCCTCATCCT
ATACGACAGCAGCAATCACAACACCATTTGGAGGAACAACTCGGCGATAAGAAGGATGATATCGAAATGAACGAA
CAACAGGATCATCATACTAAGAGGAATATCATTGATCCACGGGAAGATGAGAAGACCAAATCACTGACGAAGCAA
AAGAAGACTAAAAAGAAGAAGAAGAAGAAATTGCCCACCATAGTACCAACACCTCGTGAGCCACCATTATTCTCC
AGAAAAGATGCGGGGCATGTGGTTTATAGGAGTGGAGAAGTTATTGATATGGATGGCGTATACTGTATATGA
Gene >AgabiH97|040120
ATGACTGCGGAGCGCAGGACAGACTACGTGGAAGCCGTGAAGCCAACCACAATGTCGACGTGGCATTATATAACA
CTTCTCCAAACACGCGCAAATATCAGGGCTGTGAGGCACCAGGTTTCCCCGGTCATCTTTCTCAAGGTCCGCTTA
TTTATTTATGTAACCTCGTGTGTTCACCTCGCACGCGCGTGTGTCTGAGAAACGCGTTCTCATTCGTCCTTTTGC
TACTGGCAGAAAAAAGGGTCATCAGTGGTTGTTTTCCGGTCCCGACACCCTGTGACACCCCTCTATCTCAAGGCG
GTTACGATGGGAAAGAATGATAACAAGAAAAGTGCCACTGGAGGGAAAGGCGTCAATCTTGCGGGTATCAATACT
GTTCCGAATAGAGATATCATGCAGCGGATGAATTTTTTATGGCAGGCTAGTGTATTGCTTGGAGGGAGTGGCGTT
GGTGATACTGGTACTGGTACTAGTACTAGTCGTGGCGATGGCGCCAGTGAAGTGAAGGGTAATAGTGTTGAGAGC
GGTATGAAGACAAAGAAGGTGAAGACGAAAAAGGTGAATGGATCTGATTTGGCCAGGATGTATGTGAGGACGATG
AACGTCGTTGGACAAAGAACCACCACCAAAATGTTTGTTCTCTCCGTTTTCCCCTCGTCCATTCTGATAATTAAA
TCTTTACAGGGACCCAAGCGTAAAGCGTACTATATGTAAAGGTTGCTCAAGCGTCCTCATTCCAGGTATTTCTGC
TCGAATTCGCAATCGACGTGAGTCATCTTAAAGATTTGATCTATGTACATAATATCTGATCTTTCTCTAGCGAGT
CGACAACACGAACATCTGATGATATATACATGCTTAACATGCAATACTTCAAGAAGGATTCCCGCACCTCGAAAT
GGCGTGATCGCCTCTCCTGAAGCGAGACTTGGAATTGGTGCTACGGCTACCGAAATTATCGACACTTCGGCAGAG
AATGTCCAGCGACTGGTACAATCGTCGAATCCTTCTAATCCTCATCCTATACGACAGCAGCAATCACAACACCAT
TTGGAGGAACAACTCGGCGATAAGAAGGATGATATCGAAATGAACGAACAACAGGATCATCATACTAAGAGGAAT
ATCATTGATCCACGGGAAGATGAGAAGACCAAATCACTGACGAAGCAAAAGAAGACTAAAAAGAAGAAGAAGAAG
AAATTGCCCACCATAGTACCAACACCTCGTGAGCCACCATTATTCTCCAGAAAAGATGCGGGGCATGTGGTTTAT
AGGAGTGGAGAAGTTATTGATATGGATGGCGTATACTGTATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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