Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|040090
Gene name
Locationscaffold_2:424079..424460
Strand-
Gene length (bp)381
Transcript length (bp)276
Coding sequence length (bp)276
Protein length (aa) 92

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00651 BTB BTB/POZ domain 1.0E-05 22 63

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 69 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|040090
MDQTLTNTEHDELFYFEDDPMCIFLVENRLFKVHRHYLIQGSEVFRNMFISPTGSESHSVEGTCDEKPTALPDVT
VKEFQVGLFAVSTHYI*
Coding >AgabiH97|040090
ATGGATCAAACTCTGACCAACACGGAGCACGATGAGTTATTTTATTTCGAGGATGATCCTATGTGCATTTTTCTC
GTCGAGAATAGACTCTTTAAGGTCCATCGGCACTACCTCATTCAGGGGTCTGAAGTCTTTCGAAATATGTTCATT
AGTCCGACTGGAAGTGAGAGCCATTCTGTGGAGGGGACATGTGATGAGAAGCCTACTGCATTGCCAGATGTCACG
GTGAAAGAATTTCAGGTAGGCTTGTTTGCCGTTAGCACTCACTACATATGA
Transcript >AgabiH97|040090
ATGGATCAAACTCTGACCAACACGGAGCACGATGAGTTATTTTATTTCGAGGATGATCCTATGTGCATTTTTCTC
GTCGAGAATAGACTCTTTAAGGTCCATCGGCACTACCTCATTCAGGGGTCTGAAGTCTTTCGAAATATGTTCATT
AGTCCGACTGGAAGTGAGAGCCATTCTGTGGAGGGGACATGTGATGAGAAGCCTACTGCATTGCCAGATGTCACG
GTGAAAGAATTTCAGGTAGGCTTGTTTGCCGTTAGCACTCACTACATATGA
Gene >AgabiH97|040090
ATGGATCAAACTCTGACCAACACGGAGCACGATGAGTTATTTTATTTCGAGGATGATCCTATGTGCATTTTTCTC
GTAAGTCCTTAAATTTGCGGGGTACTCAATTGAAGAAAGACACTGGCTACAGGTCGAGAATAGACTCTTTAAGGT
CCATCGGCACTACCTCATTCAGGGGTCTGAAGTCTTTCGAAATATGTTCATTAGTCCGACTGGAAGTGAGAGCCA
TTCTGTGGAGGGGACATGTGATGAGAAGCCTACTGCATTGCCAGATGTCACGGTGAAAGAATTTCAGGTTTTGTT
ACGCTTCCTCTACCAATTGTGAGTCAGCCACTCATTGATTTGCAGGTAGGCTTGTTTGCCGTTAGCACTCACTAC
ATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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