Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|038930
Gene name
Locationscaffold_2:82708..84286
Strand-
Gene length (bp)1578
Transcript length (bp)1473
Coding sequence length (bp)1473
Protein length (aa) 491

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00646 F-box F-box domain 1.2E-05 8 48

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6633 0.3679 0.0707 0.0647 0.1622 0.0142 0.1753 0.2678 0.2598 0.0018

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1266
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|038860
Agaricus bisporus var bisporus H39 AgabiH39|038870
Agaricus bisporus var bisporus H39 AgabiH39|038890
Agaricus bisporus var bisporus H39 AgabiH39|038930
Agaricus bisporus var bisporus H39 AgabiH39|039040
Agaricus bisporus var bisporus H39 AgabiH39|238500
Agaricus bisporus var bisporus H39 AgabiH39|295900
Agaricus bisporus var bisporus H97 AgabiH97|038930 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|038920
Agaricus bisporus var bisporus H97 AgabiH97|038910
Agaricus bisporus var bisporus H97 AgabiH97|038900
Agaricus bisporus var bisporus H97 AgabiH97|038860
Agaricus bisporus var bisporus H97 AgabiH97|038870
Agaricus bisporus var bisporus H97 AgabiH97|039040
Agaricus bisporus var bisporus H97 AgabiH97|038850
Agaricus bisporus var bisporus H97 AgabiH97|038890
Agaricus bisporus var bisporus H97 AgabiH97|063380

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|038930
MEPSKIGLSSVPSEIVTEIFKQLDWRDLLNARQTCTLLYNASKTRETWDNLIRIHAVATYGLPTIFDKPMRTYNA
TNLEERFLHWMKTESTWLNEIPLNEKYIPDYSHEFLYSHLFPGGRWLVCSDFGGEVLYCDLESPETGFVPLIPYP
FSCQRKSMTMMAVEENSGTETLTFKIALVHMLFADYVKGPHGQPEMTGDSRVDVWSGRVILDEDGLGKGLQVEQL
ASVPISLYLGQPLFGVSLRGPLVAFTVEWHLFGTTIYSCDAIIIDWSSWKSQGQSFNRKIVNYLPSYAGCGRKVE
VMLLPGNRVLTTPSPELCIYDHSLIPWSSKERPVWVDMSIPEQHSCCVTVPGSSVQHPCGFSRMFPLPKNEYRVV
LNTLEGVKGLILRYTESSRFKASALELLDWDEKVDCSITEFRSHLSYNCGVARFKSGCLLRARFSWSEEEGFFET
GTSPILGETNETPLVMNMDVAAGRLAWIAVESGRVAMLDI*
Coding >AgabiH97|038930
ATGGAACCGTCAAAGATTGGGCTCAGCTCCGTACCATCTGAAATCGTCACGGAAATTTTCAAACAGCTAGATTGG
AGAGATTTACTGAATGCACGCCAGACTTGTACACTCCTTTATAACGCGTCAAAAACCAGAGAGACATGGGACAAT
CTGATCAGAATCCATGCCGTCGCCACGTATGGGCTTCCGACGATATTTGACAAACCTATGCGAACTTATAATGCA
ACCAATCTCGAAGAGCGGTTTCTCCATTGGATGAAAACCGAATCCACTTGGCTCAATGAAATCCCTTTGAATGAA
AAATACATCCCGGATTATTCACACGAATTCCTGTACTCTCATCTTTTTCCAGGAGGCCGATGGCTCGTCTGCTCT
GACTTTGGAGGCGAGGTGCTCTACTGCGATCTGGAATCACCCGAGACTGGCTTCGTTCCTCTGATCCCGTATCCG
TTCTCGTGCCAGCGCAAATCTATGACTATGATGGCTGTCGAAGAAAATTCCGGGACTGAAACCTTAACGTTTAAA
ATCGCCCTGGTCCATATGTTGTTTGCCGACTATGTGAAAGGGCCACATGGTCAACCTGAGATGACTGGGGATTCG
CGGGTTGATGTGTGGTCAGGCCGCGTTATCTTAGACGAGGACGGCCTGGGAAAGGGCTTGCAAGTTGAGCAACTC
GCATCTGTGCCTATATCTTTGTATCTTGGCCAACCTTTATTCGGTGTATCTTTACGTGGTCCACTTGTTGCCTTC
ACTGTAGAATGGCATTTGTTCGGCACGACGATTTATTCATGTGATGCGATTATCATAGACTGGAGCTCATGGAAG
AGTCAGGGTCAATCCTTTAATCGGAAAATTGTCAATTATCTACCCAGTTACGCTGGTTGTGGTCGGAAGGTCGAA
GTAATGTTACTCCCTGGAAACCGAGTGCTCACCACGCCATCTCCAGAGCTTTGCATTTACGACCATTCATTGATC
CCATGGTCCTCGAAGGAAAGACCTGTGTGGGTCGATATGTCTATACCTGAACAACATTCATGTTGCGTCACCGTC
CCCGGAAGCTCCGTCCAACATCCTTGCGGTTTCTCCAGGATGTTCCCTCTCCCAAAAAATGAGTATCGAGTGGTA
TTAAATACGTTAGAGGGGGTAAAGGGACTCATCCTGCGTTATACGGAAAGCAGCCGATTCAAGGCATCGGCATTA
GAGCTCCTCGACTGGGATGAAAAAGTGGATTGTTCTATCACTGAATTCCGATCACATCTCTCGTACAATTGTGGC
GTCGCCCGCTTTAAGTCAGGATGCCTTTTACGTGCTCGTTTTTCCTGGTCTGAAGAGGAAGGCTTCTTCGAAACG
GGGACGTCTCCTATTTTAGGCGAGACGAATGAGACACCCCTGGTTATGAACATGGATGTTGCAGCTGGAAGACTG
GCATGGATAGCAGTAGAGAGTGGTCGAGTGGCTATGCTGGATATTTAG
Transcript >AgabiH97|038930
ATGGAACCGTCAAAGATTGGGCTCAGCTCCGTACCATCTGAAATCGTCACGGAAATTTTCAAACAGCTAGATTGG
AGAGATTTACTGAATGCACGCCAGACTTGTACACTCCTTTATAACGCGTCAAAAACCAGAGAGACATGGGACAAT
CTGATCAGAATCCATGCCGTCGCCACGTATGGGCTTCCGACGATATTTGACAAACCTATGCGAACTTATAATGCA
ACCAATCTCGAAGAGCGGTTTCTCCATTGGATGAAAACCGAATCCACTTGGCTCAATGAAATCCCTTTGAATGAA
AAATACATCCCGGATTATTCACACGAATTCCTGTACTCTCATCTTTTTCCAGGAGGCCGATGGCTCGTCTGCTCT
GACTTTGGAGGCGAGGTGCTCTACTGCGATCTGGAATCACCCGAGACTGGCTTCGTTCCTCTGATCCCGTATCCG
TTCTCGTGCCAGCGCAAATCTATGACTATGATGGCTGTCGAAGAAAATTCCGGGACTGAAACCTTAACGTTTAAA
ATCGCCCTGGTCCATATGTTGTTTGCCGACTATGTGAAAGGGCCACATGGTCAACCTGAGATGACTGGGGATTCG
CGGGTTGATGTGTGGTCAGGCCGCGTTATCTTAGACGAGGACGGCCTGGGAAAGGGCTTGCAAGTTGAGCAACTC
GCATCTGTGCCTATATCTTTGTATCTTGGCCAACCTTTATTCGGTGTATCTTTACGTGGTCCACTTGTTGCCTTC
ACTGTAGAATGGCATTTGTTCGGCACGACGATTTATTCATGTGATGCGATTATCATAGACTGGAGCTCATGGAAG
AGTCAGGGTCAATCCTTTAATCGGAAAATTGTCAATTATCTACCCAGTTACGCTGGTTGTGGTCGGAAGGTCGAA
GTAATGTTACTCCCTGGAAACCGAGTGCTCACCACGCCATCTCCAGAGCTTTGCATTTACGACCATTCATTGATC
CCATGGTCCTCGAAGGAAAGACCTGTGTGGGTCGATATGTCTATACCTGAACAACATTCATGTTGCGTCACCGTC
CCCGGAAGCTCCGTCCAACATCCTTGCGGTTTCTCCAGGATGTTCCCTCTCCCAAAAAATGAGTATCGAGTGGTA
TTAAATACGTTAGAGGGGGTAAAGGGACTCATCCTGCGTTATACGGAAAGCAGCCGATTCAAGGCATCGGCATTA
GAGCTCCTCGACTGGGATGAAAAAGTGGATTGTTCTATCACTGAATTCCGATCACATCTCTCGTACAATTGTGGC
GTCGCCCGCTTTAAGTCAGGATGCCTTTTACGTGCTCGTTTTTCCTGGTCTGAAGAGGAAGGCTTCTTCGAAACG
GGGACGTCTCCTATTTTAGGCGAGACGAATGAGACACCCCTGGTTATGAACATGGATGTTGCAGCTGGAAGACTG
GCATGGATAGCAGTAGAGAGTGGTCGAGTGGCTATGCTGGATATTTAG
Gene >AgabiH97|038930
ATGGAACCGTCAAAGATTGGGCTCAGCTCCGTACCATCTGAAATCGTCACGGAAATTTTCAAACAGCTAGATTGG
AGAGATTTACTGAATGCACGCCAGGTGGGTGTATCATGTATAAGCTCTCTATATCACAATGTAATCTGTAATCTA
TAGACTTGTACACTCCTTTATAACGCGTCAAAAACCAGAGAGACATGGGACAATCTGATCAGAATCCATGCCGTC
GCCACGTATGGGCTTCCGACGATATTTGACAAACCTATGCGAACTTATAATGCAACCAATCTCGAAGAGCGGTTT
CTCCATTGGATGAAAACCGAATCCACTTGGCTCAATGAAATCCCTTTGAATGAAAAATACATCCCGGATTATTCA
CACGAATTCCTGTACTCTCATCTTTTTCCAGGAGGCCGATGGCTCGTCTGCTCTGACTTTGGAGGCGAGGTGCTC
TACTGCGATCTGGAATCACCCGAGACTGGCTTCGTTCCTCTGATCCCGTATCCGTTCTCGTGCCAGCGCAAATCT
ATGACTATGATGGCTGTCGAAGAAAATTCCGGGACTGAAACCTTAACGTTTAAAATCGCCCTGGTCCATATGTTG
TTTGCCGACTATGTGAAAGGGCCACATGGTCAACCTGAGATGACTGGGGATTCGCGGGTTGATGTGTGGTCAGGC
CGCGTTATCTTAGACGAGGACGGCCTGGGAAAGGGCTTGCAAGTTGAGCAACTCGCATCTGTGCCTATATCTTTG
TATCTTGGCCAACCTTTATTCGGTGTATCTTTACGTGGTCCACTTGTTGCCTTCACTGTAGAATGGCATTTGTTC
GGCACGACGATTTATTCATGTGATGCGATTATCATAGACTGGAGCTCATGGAAGAGTCAGGGTCAATCCTTTAAT
CGGAAAATTGTCAATTATCTACCCAGTTACGCTGGTTGTGGTCGGAAGGTGAGTTGAGCTCTCATTTAAAACCAC
ACTATTACGCAATATCTATTTCAGGTCGAAGTAATGTTACTCCCTGGAAACCGAGTGCTCACCACGCCATCTCCA
GAGCTTTGCATTTACGACCATTCATTGATCCCATGGTCCTCGAAGGAAAGACCTGTGTGGGTCGATATGTCTATA
CCTGAACAACATTCATGTTGCGTCACCGTCCCCGGAAGCTCCGTCCAACATCCTTGCGGTTTCTCCAGGATGTTC
CCTCTCCCAAAAAATGAGTATCGAGTGGTATTAAATACGTTAGAGGGGGTAAAGGGACTCATCCTGCGTTATACG
GAAAGCAGCCGATTCAAGGCATCGGCATTAGAGCTCCTCGACTGGGATGAAAAAGTGGATTGTTCTATCACTGAA
TTCCGATCACATCTCTCGTACAATTGTGGCGTCGCCCGCTTTAAGTCAGGATGCCTTTTACGTGCTCGTTTTTCC
TGGTCTGAAGAGGAAGGCTTCTTCGAAACGGGGACGTCTCCTATTTTAGGCGAGACGAATGAGACACCCCTGGTT
ATGAACATGGATGTTGCAGCTGGAAGACTGGCATGGATAGCAGTAGAGAGTGGTCGAGTGGCTATGCTGGATATT
TAG

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