Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|038920
Gene name
Locationscaffold_2:80719..82249
Strand-
Gene length (bp)1530
Transcript length (bp)1329
Coding sequence length (bp)1329
Protein length (aa) 443

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00646 F-box F-box domain 6.7E-04 15 55

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.529 0.4414 0.145 0.0588 0.1672 0.0322 0.1252 0.1784 0.1713 0.0398

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1266
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|038860
Agaricus bisporus var bisporus H39 AgabiH39|038870
Agaricus bisporus var bisporus H39 AgabiH39|038890
Agaricus bisporus var bisporus H39 AgabiH39|038930
Agaricus bisporus var bisporus H39 AgabiH39|039040
Agaricus bisporus var bisporus H39 AgabiH39|238500
Agaricus bisporus var bisporus H39 AgabiH39|295900
Agaricus bisporus var bisporus H97 AgabiH97|038930
Agaricus bisporus var bisporus H97 AgabiH97|038920 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|038910
Agaricus bisporus var bisporus H97 AgabiH97|038900
Agaricus bisporus var bisporus H97 AgabiH97|038860
Agaricus bisporus var bisporus H97 AgabiH97|038870
Agaricus bisporus var bisporus H97 AgabiH97|039040
Agaricus bisporus var bisporus H97 AgabiH97|038850
Agaricus bisporus var bisporus H97 AgabiH97|038890
Agaricus bisporus var bisporus H97 AgabiH97|063380

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|038920
MSTTRQTDEPSKIGFSSLPSEIVSEIFKELDWRDLLNERQTCTLLYNASRSREIWDNLIRIHAAAAHGPPTIFDK
PICMYNAAKLEERFLRWMKTESTWLNEIPLNEKYIPDSSHEFLYSHLLRGGRWLICSDFGGEVLYCDLESPETSF
VPLIPYPFSSRRKSMTLMAVEEDPESEILSFKIALVHMLFADYVKGPHGEPEVTGDSRIDVWSGHVILDETGQGR
GLEVGLLASIPISLYLGQPLFGVSLRGPLVAFTVEWHWFGTTIYSCDAIIVDWSSWKSQGQSFRRKTVNYLTSFA
GDGRKVEVMLLPEDRVLTVPSSRLRIYDHSLIPWSSEERPECVDMSVSQQHSYSVTVPGTSIQHPCGFSKLFPLL
DNEYRVKRAIFRQQHWSSSTGAKRWIKVLGNFDPISHIIAGLPALNRVTFYVLVFPGLTRKALSKQE*
Coding >AgabiH97|038920
ATGTCAACAACCCGCCAAACGGACGAACCGTCAAAGATTGGGTTCAGTTCGCTACCATCTGAAATCGTCTCGGAA
ATATTCAAAGAACTAGATTGGAGAGATTTACTGAACGAACGCCAGACTTGTACACTCCTTTATAACGCGTCAAGA
TCTAGAGAGATATGGGACAACTTGATTAGAATCCATGCCGCCGCCGCTCATGGGCCTCCGACGATATTCGACAAA
CCTATATGCATGTACAACGCTGCCAAACTCGAAGAGCGATTTCTCCGTTGGATGAAAACCGAGTCCACCTGGCTC
AACGAAATCCCTTTGAATGAAAAATACATTCCGGATTCTTCACACGAATTCCTGTACTCTCATCTCCTTCGAGGA
GGCCGATGGCTCATCTGCTCCGACTTTGGAGGCGAGGTGCTCTACTGCGATCTCGAATCACCCGAGACTAGCTTC
GTCCCTCTGATCCCGTATCCGTTCTCGTCCCGGCGTAAATCTATGACTCTGATGGCTGTTGAAGAGGATCCCGAG
AGTGAAATCTTGTCTTTCAAAATCGCCCTGGTCCATATGTTGTTTGCCGACTATGTTAAAGGGCCACATGGAGAA
CCTGAGGTGACTGGGGATTCGCGCATTGATGTATGGTCGGGTCATGTTATTTTGGATGAGACCGGCCAGGGAAGG
GGCTTAGAAGTTGGGCTGCTTGCGTCCATTCCTATATCTTTGTATCTTGGCCAACCTCTGTTCGGCGTGTCTCTA
CGTGGTCCCCTTGTCGCCTTCACCGTAGAATGGCATTGGTTCGGCACGACAATTTATTCATGTGATGCGATTATT
GTCGACTGGAGCTCGTGGAAAAGCCAGGGTCAATCTTTCAGACGGAAAACAGTCAATTATCTGACCAGTTTCGCT
GGAGATGGTCGAAAGGTCGAAGTGATGTTACTTCCCGAAGACCGAGTGCTTACGGTACCCTCCTCAAGGCTTCGC
ATTTACGACCATTCATTAATTCCATGGTCTTCAGAGGAGAGGCCTGAGTGCGTGGATATGTCTGTATCCCAACAA
CATTCATATAGTGTCACTGTGCCCGGAACTTCCATTCAACATCCTTGTGGCTTCTCGAAACTATTCCCTCTCCTG
GATAATGAGTATCGAGTGAAGCGGGCAATTTTCAGGCAACAGCACTGGAGCTCCTCGACTGGAGCGAAAAGATGG
ATAAAAGTATTAGGGAATTTCGATCCCATTTCTCATATAATTGCGGGGTTGCCCGCTCTAAATCGGGTCACCTTT
TACGTGCTCGTTTTTCCTGGCCTGACGAGGAAGGCTCTGTCGAAACAGGAATGA
Transcript >AgabiH97|038920
ATGTCAACAACCCGCCAAACGGACGAACCGTCAAAGATTGGGTTCAGTTCGCTACCATCTGAAATCGTCTCGGAA
ATATTCAAAGAACTAGATTGGAGAGATTTACTGAACGAACGCCAGACTTGTACACTCCTTTATAACGCGTCAAGA
TCTAGAGAGATATGGGACAACTTGATTAGAATCCATGCCGCCGCCGCTCATGGGCCTCCGACGATATTCGACAAA
CCTATATGCATGTACAACGCTGCCAAACTCGAAGAGCGATTTCTCCGTTGGATGAAAACCGAGTCCACCTGGCTC
AACGAAATCCCTTTGAATGAAAAATACATTCCGGATTCTTCACACGAATTCCTGTACTCTCATCTCCTTCGAGGA
GGCCGATGGCTCATCTGCTCCGACTTTGGAGGCGAGGTGCTCTACTGCGATCTCGAATCACCCGAGACTAGCTTC
GTCCCTCTGATCCCGTATCCGTTCTCGTCCCGGCGTAAATCTATGACTCTGATGGCTGTTGAAGAGGATCCCGAG
AGTGAAATCTTGTCTTTCAAAATCGCCCTGGTCCATATGTTGTTTGCCGACTATGTTAAAGGGCCACATGGAGAA
CCTGAGGTGACTGGGGATTCGCGCATTGATGTATGGTCGGGTCATGTTATTTTGGATGAGACCGGCCAGGGAAGG
GGCTTAGAAGTTGGGCTGCTTGCGTCCATTCCTATATCTTTGTATCTTGGCCAACCTCTGTTCGGCGTGTCTCTA
CGTGGTCCCCTTGTCGCCTTCACCGTAGAATGGCATTGGTTCGGCACGACAATTTATTCATGTGATGCGATTATT
GTCGACTGGAGCTCGTGGAAAAGCCAGGGTCAATCTTTCAGACGGAAAACAGTCAATTATCTGACCAGTTTCGCT
GGAGATGGTCGAAAGGTCGAAGTGATGTTACTTCCCGAAGACCGAGTGCTTACGGTACCCTCCTCAAGGCTTCGC
ATTTACGACCATTCATTAATTCCATGGTCTTCAGAGGAGAGGCCTGAGTGCGTGGATATGTCTGTATCCCAACAA
CATTCATATAGTGTCACTGTGCCCGGAACTTCCATTCAACATCCTTGTGGCTTCTCGAAACTATTCCCTCTCCTG
GATAATGAGTATCGAGTGAAGCGGGCAATTTTCAGGCAACAGCACTGGAGCTCCTCGACTGGAGCGAAAAGATGG
ATAAAAGTATTAGGGAATTTCGATCCCATTTCTCATATAATTGCGGGGTTGCCCGCTCTAAATCGGGTCACCTTT
TACGTGCTCGTTTTTCCTGGCCTGACGAGGAAGGCTCTGTCGAAACAGGAATGA
Gene >AgabiH97|038920
ATGTCAACAACCCGCCAAACGGACGTGAGTCTTTTCGTGAGGCGAAGATCGACTCACCGGAGCAGTATACTAGGA
ACCGTCAAAGATTGGGTTCAGTTCGCTACCATCTGAAATCGTCTCGGAAATATTCAAAGAACTAGATTGGAGAGA
TTTACTGAACGAACGCCAGGTGAGTGTGCATTCATTTGTTCTTTATACCGCAATCTAATCCCGTACGTAGACTTG
TACACTCCTTTATAACGCGTCAAGATCTAGAGAGATATGGGACAACTTGATTAGAATCCATGCCGCCGCCGCTCA
TGGGCCTCCGACGATATTCGACAAACCTATATGCATGTACAACGCTGCCAAACTCGAAGAGCGATTTCTCCGTTG
GATGAAAACCGAGTCCACCTGGCTCAACGAAATCCCTTTGAATGAAAAATACATTCCGGATTCTTCACACGAATT
CCTGTACTCTCATCTCCTTCGAGGAGGCCGATGGCTCATCTGCTCCGACTTTGGAGGCGAGGTGCTCTACTGCGA
TCTCGAATCACCCGAGACTAGCTTCGTCCCTCTGATCCCGTATCCGTTCTCGTCCCGGCGTAAATCTATGACTCT
GATGGCTGTTGAAGAGGATCCCGAGAGTGAAATCTTGTCTTTCAAAATCGCCCTGGTCCATATGTTGTTTGCCGA
CTATGTTAAAGGGCCACATGGAGAACCTGAGGTGACTGGGGATTCGCGCATTGATGTATGGTCGGGTCATGTTAT
TTTGGATGAGACCGGCCAGGGAAGGGGCTTAGAAGTTGGGCTGCTTGCGTCCATTCCTATATCTTTGTATCTTGG
CCAACCTCTGTTCGGCGTGTCTCTACGTGGTCCCCTTGTCGCCTTCACCGTAGAATGGCATTGGTTCGGCACGAC
AATTTATTCATGTGATGCGATTATTGTCGACTGGAGCTCGTGGAAAAGCCAGGGTCAATCTTTCAGACGGAAAAC
AGTCAATTATCTGACCAGTTTCGCTGGAGATGGTCGAAAGGTAAGTTGTTTCCTGCTAGTTCCAGAACATAAGAT
TGACCTGCCTACTTTAGGTCGAAGTGATGTTACTTCCCGAAGACCGAGTGCTTACGGTACCCTCCTCAAGGCTTC
GCATTTACGACCATTCATTAATTCCATGGTCTTCAGAGGAGAGGCCTGAGTGCGTGGATATGTCTGTATCCCAAC
AACATTCATATAGTGTCACTGTGCCCGGAACTTCCATTCAACATCCTTGTGGCTTCTCGAAACTATTCCCTCTCC
TGGATAATGAGTATCGAGTGGTATTCAACACCATAGTCGGGATAAGAGGACTCATCATGCGTTATACAGAAGCGG
GCAATTTTCAGGCAACAGCACTGGAGCTCCTCGACTGGAGCGAAAAGATGGATAAAAGTATTAGGGAATTTCGAT
CCCATTTCTCATATAATTGCGGGGTTGCCCGCTCTAAATCGGGTCACCTTTTACGTGCTCGTTTTTCCTGGCCTG
ACGAGGAAGGCTCTGTCGAAACAGGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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