Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|038910
Gene name
Locationscaffold_2:79168..80044
Strand-
Gene length (bp)876
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.0E-07 94 136
PF00646 F-box F-box domain 2.2E-07 93 133

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5755 0.4057 0.0842 0.1253 0.1904 0.0276 0.1002 0.11 0.1405 0.0016

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1266
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|038860
Agaricus bisporus var bisporus H39 AgabiH39|038870
Agaricus bisporus var bisporus H39 AgabiH39|038890
Agaricus bisporus var bisporus H39 AgabiH39|038930
Agaricus bisporus var bisporus H39 AgabiH39|039040
Agaricus bisporus var bisporus H39 AgabiH39|238500
Agaricus bisporus var bisporus H39 AgabiH39|295900
Agaricus bisporus var bisporus H97 AgabiH97|038930
Agaricus bisporus var bisporus H97 AgabiH97|038920
Agaricus bisporus var bisporus H97 AgabiH97|038910 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|038900
Agaricus bisporus var bisporus H97 AgabiH97|038860
Agaricus bisporus var bisporus H97 AgabiH97|038870
Agaricus bisporus var bisporus H97 AgabiH97|039040
Agaricus bisporus var bisporus H97 AgabiH97|038850
Agaricus bisporus var bisporus H97 AgabiH97|038890
Agaricus bisporus var bisporus H97 AgabiH97|063380

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|038910
MKEKKEDLNWTAEKPEKKEDTATAEDTALEEDELDEEEIEKRIEPRKLAYARSVRPGESDVDDEVILPQPTKFLY
HSMRGITRQTEEPLQTGFSSLPSEIIAEIFKELDWRDLLNARQTCTLLYNASKTREIWDNLIRIHAAAAHGPPTI
SDKPMRMYNAVKLEERFLRWMKTESTWLNEIPLNEKYIPDS*
Coding >AgabiH97|038910
ATGAAAGAGAAGAAGGAGGATCTCAACTGGACGGCTGAGAAACCGGAGAAGAAAGAAGATACAGCAACAGCAGAA
GATACCGCGTTAGAAGAGGATGAGCTGGATGAAGAAGAGATTGAAAAGAGGATAGAGCCGAGGAAATTGGCATAT
GCAAGGAGCGTACGGCCTGGAGAGAGTGACGTTGATGATGAGGTCATACTCCCTCAACCCACCAAGTTTTTATAT
CATAGCATGCGTGGCATAACCCGCCAAACAGAGGAACCCTTACAAACTGGGTTCAGCTCGCTACCATCTGAAATC
ATTGCGGAAATTTTTAAAGAACTAGATTGGAGAGATTTACTGAATGCACGCCAGACTTGCACACTCCTTTATAAC
GCGTCAAAAACCAGAGAGATATGGGACAATCTGATTAGAATCCATGCCGCCGCCGCTCATGGGCCTCCGACGATA
TCCGACAAACCTATGCGCATGTACAACGCTGTCAAACTCGAAGAGCGATTTCTCCGTTGGATGAAAACTGAGTCT
ACCTGGCTCAACGAAATCCCTTTGAATGAAAAGTACATCCCGGATTCATGA
Transcript >AgabiH97|038910
ATGAAAGAGAAGAAGGAGGATCTCAACTGGACGGCTGAGAAACCGGAGAAGAAAGAAGATACAGCAACAGCAGAA
GATACCGCGTTAGAAGAGGATGAGCTGGATGAAGAAGAGATTGAAAAGAGGATAGAGCCGAGGAAATTGGCATAT
GCAAGGAGCGTACGGCCTGGAGAGAGTGACGTTGATGATGAGGTCATACTCCCTCAACCCACCAAGTTTTTATAT
CATAGCATGCGTGGCATAACCCGCCAAACAGAGGAACCCTTACAAACTGGGTTCAGCTCGCTACCATCTGAAATC
ATTGCGGAAATTTTTAAAGAACTAGATTGGAGAGATTTACTGAATGCACGCCAGACTTGCACACTCCTTTATAAC
GCGTCAAAAACCAGAGAGATATGGGACAATCTGATTAGAATCCATGCCGCCGCCGCTCATGGGCCTCCGACGATA
TCCGACAAACCTATGCGCATGTACAACGCTGTCAAACTCGAAGAGCGATTTCTCCGTTGGATGAAAACTGAGTCT
ACCTGGCTCAACGAAATCCCTTTGAATGAAAAGTACATCCCGGATTCATGA
Gene >AgabiH97|038910
ATGAAAGAGAAGAAGGAGGATCTCAACTGGACGGCTGAGAAACCGGAGAAGAAAGAAGATACAGCAACAGCAGAA
GATACCGCGTTAGAAGAGGATGAGCTGGATGAAGAAGAGATTGAAAAGAGGATAGAGCCGAGGAAATTGGCATAT
GCAAGGAGCGTACGGCCTGGAGAGAGTGACGTTGATGATGAGGTCGTAACGACATTGATTCACGAAGTCCCAATT
GTATCATACACATGAAAGGTAAAATTTGGGCGATTCGACCCTGAATACTTGCAACGTTGAATATAAACTCCGACA
AGTTCGCAGCTTCTTCCGAGCCCAACAGGACTATTTAGGTTAGTAGTCCGTGTCCTATTGACAATACGGTCTCAA
TACGCTTGAATATGACAGATACTCCCTCAACCCACCAAGTTTTTATATCATAGCATGCGTGGCATAACCCGCCAA
ACAGAGGTGAGTCTCTATGTATAACGAGAGATTGACTCATGGTGAGGTATACTAGGAACCCTTACAAACTGGGTT
CAGCTCGCTACCATCTGAAATCATTGCGGAAATTTTTAAAGAACTAGATTGGAGAGATTTACTGAATGCACGCCA
GGTGGGTGCATCATGTATAAGCTCTCTATATCGCAATCTCATCCGTAGTCTTAGACTTGCACACTCCTTTATAAC
GCGTCAAAAACCAGAGAGATATGGGACAATCTGATTAGAATCCATGCCGCCGCCGCTCATGGGCCTCCGACGATA
TCCGACAAACCTATGCGCATGTACAACGCTGTCAAACTCGAAGAGCGATTTCTCCGTTGGATGAAAACTGAGTCT
ACCTGGCTCAACGAAATCCCTTTGAATGAAAAGTACATCCCGGATTCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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