Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|038870
Gene name
Locationscaffold_2:68502..70152
Strand+
Gene length (bp)1650
Transcript length (bp)1485
Coding sequence length (bp)1485
Protein length (aa) 495

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 5.1E-06 13 54
PF00646 F-box F-box domain 2.9E-05 13 51

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.603 0.436 0.0792 0.0487 0.2028 0.0123 0.1318 0.2018 0.2977 0.0045

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1266
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|038860
Agaricus bisporus var bisporus H39 AgabiH39|038870
Agaricus bisporus var bisporus H39 AgabiH39|038890
Agaricus bisporus var bisporus H39 AgabiH39|038930
Agaricus bisporus var bisporus H39 AgabiH39|039040
Agaricus bisporus var bisporus H39 AgabiH39|238500
Agaricus bisporus var bisporus H39 AgabiH39|295900
Agaricus bisporus var bisporus H97 AgabiH97|038930
Agaricus bisporus var bisporus H97 AgabiH97|038920
Agaricus bisporus var bisporus H97 AgabiH97|038910
Agaricus bisporus var bisporus H97 AgabiH97|038900
Agaricus bisporus var bisporus H97 AgabiH97|038860
Agaricus bisporus var bisporus H97 AgabiH97|038870 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|039040
Agaricus bisporus var bisporus H97 AgabiH97|038850
Agaricus bisporus var bisporus H97 AgabiH97|038890
Agaricus bisporus var bisporus H97 AgabiH97|063380

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|038870
MSTISQMATGLVSMPPEIVVEIFKQLHWKDLLAARQTCTLFHNISKSRDIWENLIQIHAAATHRLPTTLEKPILM
YTAGKLEEHFLRGARNESKWLDDIPFEERSIPSPHKFRHCHLLRGGRWFLCSATGGEMLYSDLESSGSGLVPLIP
YPFPYTCDSITSMAIEEDNEAEILCFKIALVHILEEDWSYRSSGETTVTGDSRVDVWFGKVVLDEDGTATHLHAE
KLASVPLPVYLGRPILGASLHGSLLAFTVEWESLDGFGTQCDAIILDWKAPPRTKNQPCIRKTVHYSITWAQPAV
KTDVILLPGDHLLTVVQSMIRIYDHSLVPWASERRHKREVLSLSEQCAHAINIPKSFCGVPRDFSPIFSLSGDRY
RVVFNSLSGIRGLTLQYRDGGVFKASLVDLLEWPRTMDVFLEDRQSHFSYNYGVTLGSFNSLFRSHFTWPDEEGS
SPSRLSVMVGNLSRLPVVMNMDVSMGRVLWISNHGGLKEASFTA*
Coding >AgabiH97|038870
ATGTCAACAATTTCCCAAATGGCCACTGGGCTTGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAG
TTACATTGGAAAGATCTACTGGCGGCGCGCCAGACCTGTACGCTCTTTCACAATATTTCTAAATCTAGGGATATA
TGGGAGAACCTGATTCAAATTCACGCTGCTGCCACACATAGGCTCCCGACAACGTTAGAAAAACCGATACTTATG
TATACTGCTGGCAAACTCGAGGAACATTTCCTTCGTGGCGCACGAAATGAGTCCAAATGGCTGGACGATATTCCG
TTTGAGGAACGGAGTATTCCGTCTCCTCACAAATTCCGACATTGTCATCTCCTTCGAGGCGGACGGTGGTTCCTC
TGCTCCGCCACTGGAGGCGAGATGCTCTATAGTGACCTCGAATCGTCTGGATCTGGATTAGTTCCCTTAATCCCA
TATCCCTTCCCATACACATGCGACTCTATCACTTCAATGGCTATCGAAGAAGACAACGAGGCGGAAATCCTATGT
TTTAAAATCGCTCTAGTCCATATTTTGGAGGAAGATTGGTCATACAGATCGAGTGGCGAAACGACGGTGACTGGA
GACTCCCGGGTTGACGTGTGGTTTGGAAAGGTCGTTTTGGATGAAGATGGGACTGCTACGCATTTGCACGCTGAG
AAGCTTGCCTCCGTTCCCTTGCCTGTTTATCTTGGTAGACCAATATTGGGTGCATCTTTGCACGGCTCCCTACTT
GCTTTTACTGTTGAATGGGAATCTCTGGATGGATTTGGCACGCAATGCGACGCGATCATTTTAGACTGGAAAGCG
CCACCAAGGACTAAAAATCAGCCCTGTATCCGTAAGACTGTCCATTATTCTATCACCTGGGCTCAACCTGCCGTC
AAGACGGATGTAATACTTCTCCCCGGAGATCACTTGCTTACCGTAGTTCAATCGATGATTCGCATTTATGACCAC
TCCTTGGTTCCGTGGGCCTCAGAGCGACGGCACAAGCGTGAGGTACTTTCGCTTTCTGAGCAATGTGCACACGCT
ATCAATATACCCAAATCCTTTTGCGGCGTTCCTCGCGATTTCTCGCCTATATTTTCCCTCTCTGGAGATCGATAT
CGCGTGGTGTTCAATAGCTTGAGTGGGATAAGGGGTTTGACGTTGCAATATAGAGACGGGGGTGTATTCAAAGCC
TCTTTAGTTGACCTTTTGGAGTGGCCCAGAACGATGGATGTATTCCTCGAGGATCGCCAGTCCCACTTCTCATAT
AACTATGGCGTAACTCTTGGCAGCTTTAACTCTCTTTTCCGTTCTCATTTTACCTGGCCAGATGAGGAGGGATCA
TCACCAAGCAGGCTGTCAGTCATGGTCGGAAACCTGAGTCGGCTTCCTGTTGTCATGAACATGGATGTCAGTATG
GGGAGAGTGCTATGGATATCGAACCACGGTGGACTGAAAGAGGCTTCGTTCACAGCTTGA
Transcript >AgabiH97|038870
ATGTCAACAATTTCCCAAATGGCCACTGGGCTTGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAG
TTACATTGGAAAGATCTACTGGCGGCGCGCCAGACCTGTACGCTCTTTCACAATATTTCTAAATCTAGGGATATA
TGGGAGAACCTGATTCAAATTCACGCTGCTGCCACACATAGGCTCCCGACAACGTTAGAAAAACCGATACTTATG
TATACTGCTGGCAAACTCGAGGAACATTTCCTTCGTGGCGCACGAAATGAGTCCAAATGGCTGGACGATATTCCG
TTTGAGGAACGGAGTATTCCGTCTCCTCACAAATTCCGACATTGTCATCTCCTTCGAGGCGGACGGTGGTTCCTC
TGCTCCGCCACTGGAGGCGAGATGCTCTATAGTGACCTCGAATCGTCTGGATCTGGATTAGTTCCCTTAATCCCA
TATCCCTTCCCATACACATGCGACTCTATCACTTCAATGGCTATCGAAGAAGACAACGAGGCGGAAATCCTATGT
TTTAAAATCGCTCTAGTCCATATTTTGGAGGAAGATTGGTCATACAGATCGAGTGGCGAAACGACGGTGACTGGA
GACTCCCGGGTTGACGTGTGGTTTGGAAAGGTCGTTTTGGATGAAGATGGGACTGCTACGCATTTGCACGCTGAG
AAGCTTGCCTCCGTTCCCTTGCCTGTTTATCTTGGTAGACCAATATTGGGTGCATCTTTGCACGGCTCCCTACTT
GCTTTTACTGTTGAATGGGAATCTCTGGATGGATTTGGCACGCAATGCGACGCGATCATTTTAGACTGGAAAGCG
CCACCAAGGACTAAAAATCAGCCCTGTATCCGTAAGACTGTCCATTATTCTATCACCTGGGCTCAACCTGCCGTC
AAGACGGATGTAATACTTCTCCCCGGAGATCACTTGCTTACCGTAGTTCAATCGATGATTCGCATTTATGACCAC
TCCTTGGTTCCGTGGGCCTCAGAGCGACGGCACAAGCGTGAGGTACTTTCGCTTTCTGAGCAATGTGCACACGCT
ATCAATATACCCAAATCCTTTTGCGGCGTTCCTCGCGATTTCTCGCCTATATTTTCCCTCTCTGGAGATCGATAT
CGCGTGGTGTTCAATAGCTTGAGTGGGATAAGGGGTTTGACGTTGCAATATAGAGACGGGGGTGTATTCAAAGCC
TCTTTAGTTGACCTTTTGGAGTGGCCCAGAACGATGGATGTATTCCTCGAGGATCGCCAGTCCCACTTCTCATAT
AACTATGGCGTAACTCTTGGCAGCTTTAACTCTCTTTTCCGTTCTCATTTTACCTGGCCAGATGAGGAGGGATCA
TCACCAAGCAGGCTGTCAGTCATGGTCGGAAACCTGAGTCGGCTTCCTGTTGTCATGAACATGGATGTCAGTATG
GGGAGAGTGCTATGGATATCGAACCACGGTGGACTGAAAGAGGCTTCGTTCACAGCTTGA
Gene >AgabiH97|038870
ATGTCAACAATTTCCCAAATGGCCGTGAGTCTTTATGTGAAGAACCGCTAGACACCTCCTCACAGATAAGCATAC
AACTTTCGAAGACTGGGCTTGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAGTTACATTGGAAAG
ATCTACTGGCGGCGCGCCAGGTGAGTGTAGACCGGCCATACTTCTTTCTATATACCATTCTAATCCTGTAGACCT
GTACGCTCTTTCACAATATTTCTAAATCTAGGGATATATGGGAGAACCTGATTCAAATTCACGCTGCTGCCACAC
ATAGGCTCCCGACAACGTTAGAAAAACCGATACTTATGTATACTGCTGGCAAACTCGAGGAACATTTCCTTCGTG
GCGCACGAAATGAGTCCAAATGGCTGGACGATATTCCGTTTGAGGAACGGAGTATTCCGTCTCCTCACAAATTCC
GACATTGTCATCTCCTTCGAGGCGGACGGTGGTTCCTCTGCTCCGCCACTGGAGGCGAGATGCTCTATAGTGACC
TCGAATCGTCTGGATCTGGATTAGTTCCCTTAATCCCATATCCCTTCCCATACACATGCGACTCTATCACTTCAA
TGGCTATCGAAGAAGACAACGAGGCGGAAATCCTATGTTTTAAAATCGCTCTAGTCCATATTTTGGAGGAAGATT
GGTCATACAGATCGAGTGGCGAAACGACGGTGACTGGAGACTCCCGGGTTGACGTGTGGTTTGGAAAGGTCGTTT
TGGATGAAGATGGGACTGCTACGCATTTGCACGCTGAGAAGCTTGCCTCCGTTCCCTTGCCTGTTTATCTTGGTA
GACCAATATTGGGTGCATCTTTGCACGGCTCCCTACTTGCTTTTACTGTTGAATGGGAATCTCTGGATGGATTTG
GCACGCAATGCGACGCGATCATTTTAGACTGGAAAGCGCCACCAAGGACTAAAAATCAGCCCTGTATCCGTAAGA
CTGTCCATTATTCTATCACCTGGGCTCAACCTGCCGTCAAGGTAAGCTCGGTCATTTGATTTGTGAAGTACCAAT
CAAACACAGTTCTGTTAGACGGATGTAATACTTCTCCCCGGAGATCACTTGCTTACCGTAGTTCAATCGATGATT
CGCATTTATGACCACTCCTTGGTTCCGTGGGCCTCAGAGCGACGGCACAAGCGTGAGGTACTTTCGCTTTCTGAG
CAATGTGCACACGCTATCAATATACCCAAATCCTTTTGCGGCGTTCCTCGCGATTTCTCGCCTATATTTTCCCTC
TCTGGAGATCGATATCGCGTGGTGTTCAATAGCTTGAGTGGGATAAGGGGTTTGACGTTGCAATATAGAGACGGG
GGTGTATTCAAAGCCTCTTTAGTTGACCTTTTGGAGTGGCCCAGAACGATGGATGTATTCCTCGAGGATCGCCAG
TCCCACTTCTCATATAACTATGGCGTAACTCTTGGCAGCTTTAACTCTCTTTTCCGTTCTCATTTTACCTGGCCA
GATGAGGAGGGATCATCACCAAGCAGGCTGTCAGTCATGGTCGGAAACCTGAGTCGGCTTCCTGTTGTCATGAAC
ATGGATGTCAGTATGGGGAGAGTGCTATGGATATCGAACCACGGTGGACTGAAAGAGGCTTCGTTCACAGCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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