Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|038860
Gene name
Locationscaffold_2:66174..67801
Strand+
Gene length (bp)1627
Transcript length (bp)1464
Coding sequence length (bp)1464
Protein length (aa) 488

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 2.4E-06 7 48

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6436 0.4147 0.0575 0.0562 0.1861 0.009 0.1541 0.186 0.2979 0.0031

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1266
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|038860
Agaricus bisporus var bisporus H39 AgabiH39|038870
Agaricus bisporus var bisporus H39 AgabiH39|038890
Agaricus bisporus var bisporus H39 AgabiH39|038930
Agaricus bisporus var bisporus H39 AgabiH39|039040
Agaricus bisporus var bisporus H39 AgabiH39|238500
Agaricus bisporus var bisporus H39 AgabiH39|295900
Agaricus bisporus var bisporus H97 AgabiH97|038930
Agaricus bisporus var bisporus H97 AgabiH97|038920
Agaricus bisporus var bisporus H97 AgabiH97|038910
Agaricus bisporus var bisporus H97 AgabiH97|038900
Agaricus bisporus var bisporus H97 AgabiH97|038860 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|038870
Agaricus bisporus var bisporus H97 AgabiH97|039040
Agaricus bisporus var bisporus H97 AgabiH97|038850
Agaricus bisporus var bisporus H97 AgabiH97|038890
Agaricus bisporus var bisporus H97 AgabiH97|063380

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|038860
MATGLVSMPPEIVVEIFKQLHWKDLLAARQTCSVFYTISKSRDIWENLIQTHAAATHGPPTTLEKPMYMYSACKL
EEHFLRGARNESKWLDNIPFEERSIPSPHKFRHCHLLRGGRWFICSATGGEVLYCDLESPGFGLVPLIPYPFPYP
CDSITSMAIEEDNEAEILSFNIALVHVLEEDWLYRSSGETAVTGDSRVDVWFGKVVLGEDGNGTHLHAEKLASVP
LPVYLGKPILGASLRGSLLAFTVEWESLDGFGTQCDAIILDWKAPPRTKHQLCIRKTVHFSITWASGVKTELMLL
PGDHLLTVIRSMIRIYDHSLVPWASERRHWREALSLSEQCAHVINILPPFGPVPRDFSPIFSLSGDRYRVVFNCF
RGIRGLTLQYKDGGLFKATLVDLLEWPRTIDAFIEDRQSHFLYNYGVTLGSYDSLFRSHFTWPDEEGSSPNRLSA
ITGNLSCLPAVMNMDVNTGRVLWISNRGELKEASFTA*
Coding >AgabiH97|038860
ATGGCCACTGGGCTCGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAGCTCCACTGGAAAGATCTA
CTGGCGGCGCGCCAGACTTGCTCAGTCTTTTACACTATATCTAAATCGAGGGATATATGGGAGAACTTGATTCAA
ACTCACGCTGCTGCCACGCATGGGCCCCCAACAACGTTGGAAAAACCGATGTATATGTATAGTGCGTGCAAACTC
GAAGAACATTTCCTTCGTGGCGCACGAAATGAGTCCAAATGGCTGGACAATATTCCGTTTGAAGAAAGGAGTATT
CCGTCTCCTCACAAATTCCGGCATTGTCATCTCCTTCGAGGCGGACGGTGGTTCATCTGCTCCGCAACTGGAGGT
GAGGTGCTCTATTGTGACCTCGAATCGCCTGGATTTGGATTAGTTCCCTTAATCCCATATCCCTTCCCATACCCA
TGCGACTCTATTACTTCAATGGCTATCGAAGAAGACAACGAGGCGGAAATTTTAAGTTTTAACATCGCTCTAGTC
CATGTTTTGGAGGAAGATTGGTTATATAGATCGAGTGGCGAAACGGCTGTGACTGGAGACTCCCGGGTTGACGTG
TGGTTTGGAAAGGTCGTTTTGGGTGAAGATGGGAATGGTACGCATTTGCACGCTGAGAAGCTTGCGTCCGTTCCC
TTACCTGTTTATCTTGGTAAACCAATATTGGGTGCATCTTTACGCGGCTCCCTGCTTGCTTTTACTGTTGAATGG
GAATCTCTGGATGGATTTGGCACGCAATGCGATGCGATCATATTAGACTGGAAAGCGCCGCCGAGGACTAAACAT
CAACTCTGTATCCGCAAAACTGTCCATTTTTCTATCACTTGGGCTTCTGGCGTCAAGACGGAATTGATGCTCCTC
CCCGGAGATCACTTGCTTACCGTAATTCGATCGATGATCCGCATTTATGACCACTCCTTGGTTCCATGGGCCTCA
GAGCGGCGGCACTGGCGTGAGGCACTTTCGCTATCTGAGCAATGTGCGCACGTTATCAATATACTCCCACCCTTT
GGCCCCGTTCCTCGCGATTTCTCGCCAATTTTCTCCCTCTCTGGAGATCGATATCGTGTAGTGTTCAATTGCTTT
CGTGGGATAAGGGGTTTGACGTTGCAATATAAAGACGGGGGCTTATTCAAAGCCACTTTAGTTGACCTTTTGGAA
TGGCCCAGAACGATAGACGCATTCATCGAGGATCGCCAGTCCCACTTCTTGTATAACTATGGCGTAACTCTTGGC
AGCTATGACTCTCTTTTTCGTTCTCATTTTACCTGGCCTGATGAGGAGGGATCATCGCCAAACAGGCTCTCAGCT
ATCACGGGAAACCTGAGTTGTCTTCCTGCTGTCATGAATATGGATGTCAATACGGGAAGAGTGTTATGGATATCA
AACCGCGGCGAATTGAAAGAGGCTTCGTTCACAGCATGA
Transcript >AgabiH97|038860
ATGGCCACTGGGCTCGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAGCTCCACTGGAAAGATCTA
CTGGCGGCGCGCCAGACTTGCTCAGTCTTTTACACTATATCTAAATCGAGGGATATATGGGAGAACTTGATTCAA
ACTCACGCTGCTGCCACGCATGGGCCCCCAACAACGTTGGAAAAACCGATGTATATGTATAGTGCGTGCAAACTC
GAAGAACATTTCCTTCGTGGCGCACGAAATGAGTCCAAATGGCTGGACAATATTCCGTTTGAAGAAAGGAGTATT
CCGTCTCCTCACAAATTCCGGCATTGTCATCTCCTTCGAGGCGGACGGTGGTTCATCTGCTCCGCAACTGGAGGT
GAGGTGCTCTATTGTGACCTCGAATCGCCTGGATTTGGATTAGTTCCCTTAATCCCATATCCCTTCCCATACCCA
TGCGACTCTATTACTTCAATGGCTATCGAAGAAGACAACGAGGCGGAAATTTTAAGTTTTAACATCGCTCTAGTC
CATGTTTTGGAGGAAGATTGGTTATATAGATCGAGTGGCGAAACGGCTGTGACTGGAGACTCCCGGGTTGACGTG
TGGTTTGGAAAGGTCGTTTTGGGTGAAGATGGGAATGGTACGCATTTGCACGCTGAGAAGCTTGCGTCCGTTCCC
TTACCTGTTTATCTTGGTAAACCAATATTGGGTGCATCTTTACGCGGCTCCCTGCTTGCTTTTACTGTTGAATGG
GAATCTCTGGATGGATTTGGCACGCAATGCGATGCGATCATATTAGACTGGAAAGCGCCGCCGAGGACTAAACAT
CAACTCTGTATCCGCAAAACTGTCCATTTTTCTATCACTTGGGCTTCTGGCGTCAAGACGGAATTGATGCTCCTC
CCCGGAGATCACTTGCTTACCGTAATTCGATCGATGATCCGCATTTATGACCACTCCTTGGTTCCATGGGCCTCA
GAGCGGCGGCACTGGCGTGAGGCACTTTCGCTATCTGAGCAATGTGCGCACGTTATCAATATACTCCCACCCTTT
GGCCCCGTTCCTCGCGATTTCTCGCCAATTTTCTCCCTCTCTGGAGATCGATATCGTGTAGTGTTCAATTGCTTT
CGTGGGATAAGGGGTTTGACGTTGCAATATAAAGACGGGGGCTTATTCAAAGCCACTTTAGTTGACCTTTTGGAA
TGGCCCAGAACGATAGACGCATTCATCGAGGATCGCCAGTCCCACTTCTTGTATAACTATGGCGTAACTCTTGGC
AGCTATGACTCTCTTTTTCGTTCTCATTTTACCTGGCCTGATGAGGAGGGATCATCGCCAAACAGGCTCTCAGCT
ATCACGGGAAACCTGAGTTGTCTTCCTGCTGTCATGAATATGGATGTCAATACGGGAAGAGTGTTATGGATATCA
AACCGCGGCGAATTGAAAGAGGCTTCGTTCACAGCATGA
Gene >AgabiH97|038860
ATGGCCGTGAGTCTTTATGTGAAGATCTGCTAGACACCTCCTAACAGAAAAGCATATAACTTTCGAAGACTGGGC
TCGTCTCTATGCCACCCGAAATTGTCGTTGAGATCTTCAAGCAGCTCCACTGGAAAGATCTACTGGCGGCGCGCC
AGGTGAGTGTAGACCGGCTATACTTCTTTCTATTAACCATTCTAATCATGTAGACTTGCTCAGTCTTTTACACTA
TATCTAAATCGAGGGATATATGGGAGAACTTGATTCAAACTCACGCTGCTGCCACGCATGGGCCCCCAACAACGT
TGGAAAAACCGATGTATATGTATAGTGCGTGCAAACTCGAAGAACATTTCCTTCGTGGCGCACGAAATGAGTCCA
AATGGCTGGACAATATTCCGTTTGAAGAAAGGAGTATTCCGTCTCCTCACAAATTCCGGCATTGTCATCTCCTTC
GAGGCGGACGGTGGTTCATCTGCTCCGCAACTGGAGGTGAGGTGCTCTATTGTGACCTCGAATCGCCTGGATTTG
GATTAGTTCCCTTAATCCCATATCCCTTCCCATACCCATGCGACTCTATTACTTCAATGGCTATCGAAGAAGACA
ACGAGGCGGAAATTTTAAGTTTTAACATCGCTCTAGTCCATGTTTTGGAGGAAGATTGGTTATATAGATCGAGTG
GCGAAACGGCTGTGACTGGAGACTCCCGGGTTGACGTGTGGTTTGGAAAGGTCGTTTTGGGTGAAGATGGGAATG
GTACGCATTTGCACGCTGAGAAGCTTGCGTCCGTTCCCTTACCTGTTTATCTTGGTAAACCAATATTGGGTGCAT
CTTTACGCGGCTCCCTGCTTGCTTTTACTGTTGAATGGGAATCTCTGGATGGATTTGGCACGCAATGCGATGCGA
TCATATTAGACTGGAAAGCGCCGCCGAGGACTAAACATCAACTCTGTATCCGCAAAACTGTCCATTTTTCTATCA
CTTGGGCTTCTGGCGTCAAGGTACGCTTGTTCATTGGGTTTGTGTACTACCATTAAAACAGTTCTATTAGACGGA
ATTGATGCTCCTCCCCGGAGATCACTTGCTTACCGTAATTCGATCGATGATCCGCATTTATGACCACTCCTTGGT
TCCATGGGCCTCAGAGCGGCGGCACTGGCGTGAGGCACTTTCGCTATCTGAGCAATGTGCGCACGTTATCAATAT
ACTCCCACCCTTTGGCCCCGTTCCTCGCGATTTCTCGCCAATTTTCTCCCTCTCTGGAGATCGATATCGTGTAGT
GTTCAATTGCTTTCGTGGGATAAGGGGTTTGACGTTGCAATATAAAGACGGGGGCTTATTCAAAGCCACTTTAGT
TGACCTTTTGGAATGGCCCAGAACGATAGACGCATTCATCGAGGATCGCCAGTCCCACTTCTTGTATAACTATGG
CGTAACTCTTGGCAGCTATGACTCTCTTTTTCGTTCTCATTTTACCTGGCCTGATGAGGAGGGATCATCGCCAAA
CAGGCTCTCAGCTATCACGGGAAACCTGAGTTGTCTTCCTGCTGTCATGAATATGGATGTCAATACGGGAAGAGT
GTTATGGATATCAAACCGCGGCGAATTGAAAGAGGCTTCGTTCACAGCATGA

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