© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|037980 |
| Gene name | |
| Location | scaffold_13:1175563..1176852 |
| Strand | - |
| Gene length (bp) | 1289 |
| Transcript length (bp) | 1104 |
| Coding sequence length (bp) | 1104 |
| Protein length (aa) | 368 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 2.5E-18 | 115 | 332 |
| PF10340 | Say1_Mug180 | Steryl acetyl hydrolase | 4.0E-16 | 112 | 341 |
| PF20434 | BD-FAE | BD-FAE | 1.8E-08 | 110 | 200 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HDV1|MU180_SCHPO | Putative steryl acetyl hydrolase mug81 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug180 PE=1 SV=1 | 107 | 353 | 3.0E-09 |
| sp|Q8BLF1|NCEH1_MOUSE | Neutral cholesterol ester hydrolase 1 OS=Mus musculus GN=Nceh1 PE=1 SV=1 | 82 | 199 | 1.0E-08 |
| sp|Q1JQE6|NCEH1_BOVIN | Neutral cholesterol ester hydrolase 1 OS=Bos taurus GN=NCEH1 PE=2 SV=2 | 107 | 199 | 9.0E-08 |
| sp|P18773|EST_ACILW | Esterase OS=Acinetobacter lwoffii GN=est PE=3 SV=2 | 113 | 341 | 1.0E-07 |
| sp|Q01109|BAH_STRHY | Acetyl-hydrolase OS=Streptomyces hygroscopicus GN=bah PE=3 SV=3 | 99 | 329 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 23 | 42 | 19 |
| 2 | 114 | 136 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 144.34 | 79.09 | 209.59 |
| Initials | Initials knots | 78.91 | 46.96 | 110.86 |
| Pileal_Stipeal_center | Stage I stipe center | 189.06 | 110.65 | 267.47 |
| Pileal_Stipeal_shell | Stage I stipe shell | 173.69 | 103.06 | 244.33 |
| DIF_stipe_center | Stage II stipe center | 71.30 | 42.23 | 100.37 |
| DIF_stipe_shell | Stage II stipe shell | 151.59 | 89.35 | 213.83 |
| DIF_stipe_skin | Stage II stipe skin | 168.20 | 99.73 | 236.67 |
| DIF_cap_skin | Stage II cap skin | 220.42 | 129.25 | 311.60 |
| DIF_cap_tissue | Stage II cap tissue | 203.48 | 117.51 | 289.44 |
| DIF_gill_tissue | Stage II gill tissue | 149.20 | 88.88 | 209.53 |
| YFB_stipe_center | Young fruiting body stipe center | 63.10 | 37.47 | 88.73 |
| YFB_stipe_shell | Young fruiting body stipe shell | 88.60 | 53.06 | 124.13 |
| YFB_stipe_skin | Young fruiting body stipe skin | 147.21 | 85.35 | 209.06 |
| YFB_cap_skin | Young fruiting body cap skin | 191.98 | 113.45 | 270.52 |
| YFB_cap_tissue | Young fruiting body cap tissue | 147.91 | 88.13 | 207.70 |
| YFB_gill_tissue | Young fruiting body gill tissue | 196.58 | 116.23 | 276.93 |
| YFB_veil | Young fruiting body veil | 202.47 | 118.96 | 285.99 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.954091 | no |
| Casing | YFB_stipe_center | 0.001140 | yes |
| Casing | YFB_stipe_shell | 0.091835 | no |
| Casing | YFB_stipe_skin | 0.972674 | no |
| Casing | YFB_cap_skin | 0.409375 | no |
| Casing | YFB_cap_tissue | 0.966527 | no |
| Casing | YFB_gill_tissue | 0.356206 | no |
| Casing | YFB_veil | 0.307370 | no |
| Casing | Initials | 0.032038 | yes |
| Casing | Pileal_Stipeal_center | 0.448191 | no |
| Casing | Pileal_Stipeal_shell | 0.647532 | no |
| Casing | DIF_stipe_center | 0.007439 | yes |
| Casing | DIF_stipe_shell | 0.929558 | no |
| Casing | DIF_stipe_skin | 0.723996 | no |
| Casing | DIF_cap_skin | 0.172056 | no |
| Casing | DIF_cap_tissue | 0.298330 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.048007 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.980520 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.458516 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.986610 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.401168 | no |
| DIF_gill_tissue | YFB_veil | 0.347228 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.264830 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_veil | 0.000613 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.056170 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.001140 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.053765 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.001140 | yes |
| YFB_stipe_shell | YFB_veil | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.431684 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.991942 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.372069 | no |
| YFB_stipe_skin | YFB_veil | 0.322072 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.451438 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.965501 | no |
| YFB_cap_skin | YFB_veil | 0.919193 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.386259 | no |
| YFB_cap_tissue | YFB_veil | 0.332715 | no |
| YFB_gill_tissue | YFB_veil | 0.957430 | no |
| Initials | DIF_gill_tissue | 0.011968 | yes |
| Initials | YFB_stipe_center | 0.536319 | no |
| Initials | YFB_stipe_shell | 0.793694 | no |
| Initials | YFB_stipe_skin | 0.016386 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.014668 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.001140 | yes |
| Initials | DIF_stipe_center | 0.828963 | no |
| Initials | DIF_stipe_shell | 0.014956 | yes |
| Initials | DIF_stipe_skin | 0.002525 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.501355 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.002525 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.468959 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.976502 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.486632 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.940838 | no |
| Pileal_Stipeal_center | YFB_veil | 0.891033 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.858759 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.538888 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.791409 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.715442 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.881795 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.711764 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.007782 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.679894 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.828081 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.693959 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.778468 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.713239 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.749213 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.953570 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.507483 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.701187 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.001625 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.778185 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.539251 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.002951 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.002525 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_center | YFB_veil | 0.000613 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.002525 | yes |
| DIF_stipe_center | DIF_stipe_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.000613 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.976960 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.000613 | yes |
| DIF_stipe_shell | YFB_stipe_shell | 0.049674 | yes |
| DIF_stipe_shell | YFB_stipe_skin | 0.956799 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.507242 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.964221 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.448408 | no |
| DIF_stipe_shell | YFB_veil | 0.385946 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.822965 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.222255 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.377603 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.785172 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_stipe_skin | YFB_stipe_shell | 0.010093 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.755289 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.755289 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.767624 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.698231 | no |
| DIF_stipe_skin | YFB_veil | 0.627468 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.423173 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.617316 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.188910 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.167499 | no |
| DIF_cap_skin | YFB_cap_skin | 0.743273 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.179329 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.801202 | no |
| DIF_cap_skin | YFB_veil | 0.862827 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.871053 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.344845 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.001140 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.312782 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.913118 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.330474 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.950733 | no |
| DIF_cap_tissue | YFB_veil | 0.992660 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|037980 MSENTSLIPRANQYGRPSFFEKVSIFFKLLLLPIVLVWTFVFKWSGRTRKRSVCDGRIRYVVTKFNIRQLQYLFG TTRGNYTTWCKQAKQEPQIESIGGDANLLWIGERRPEKVILYLHGGGFLLPPGVTNIAFFAHVVTKLRERGINAS VAMLEYTLVPVAAFPTQLKQAVAAINHLMSLGVDPQDIQLAGDSAGANLILQVLAHLLHPLEYENVPPLSLPSPL KGACLISPWVDLSDIHGTLSSGNSTDMLTAGIIRDWGSQVLGPVPREYLGYIEANSAKDDWWKGVDAFADRVLVT AGREECLNNEIIRFQSVFETFHSHVNMQEHSGIHNDPFYAWELGESGGGAPDMIVDWLQAGFQESPV* |
| Coding | >AgabiH97|037980 ATGTCGGAAAACACTTCCTTGATACCGAGAGCAAACCAATACGGTCGTCCTTCCTTTTTCGAAAAGGTCTCGATA TTCTTCAAACTTCTCCTCCTACCCATCGTCTTGGTTTGGACCTTTGTTTTCAAGTGGAGTGGCAGGACCAGAAAG CGCAGTGTTTGTGATGGCCGTATTCGATACGTAGTCACCAAGTTCAATATCCGTCAACTTCAATACCTTTTCGGA ACAACCAGAGGGAACTACACTACTTGGTGCAAGCAAGCGAAACAAGAGCCTCAGATCGAGTCAATCGGTGGAGAT GCAAACCTTCTCTGGATAGGCGAGCGGAGACCAGAGAAAGTCATCTTATATCTACACGGTGGTGGTTTCTTGCTA CCCCCCGGTGTAACAAATATCGCATTTTTCGCTCATGTTGTGACCAAGCTTCGGGAACGCGGTATCAACGCATCC GTTGCGATGCTCGAGTACACTCTCGTCCCAGTAGCTGCTTTTCCCACCCAACTCAAACAAGCTGTGGCTGCCATT AACCACCTCATGAGCCTAGGCGTTGATCCACAAGACATCCAGCTGGCGGGCGACTCTGCAGGTGCAAACTTGATA CTACAAGTTCTTGCCCACCTTTTGCACCCTCTTGAGTATGAAAATGTACCGCCTTTATCCCTTCCTTCTCCTCTC AAAGGTGCCTGCCTAATATCCCCTTGGGTGGATCTCTCGGATATACATGGAACACTCAGTAGCGGCAATTCCACT GATATGCTCACTGCTGGCATTATTCGAGATTGGGGTTCACAGGTCCTCGGCCCCGTGCCAAGGGAGTACCTCGGA TATATTGAAGCAAATAGTGCAAAGGATGATTGGTGGAAGGGCGTCGACGCGTTCGCGGACCGTGTCCTTGTCACG GCAGGCCGGGAAGAGTGTCTCAACAATGAGATTATTCGTTTCCAATCCGTATTTGAAACTTTCCATTCCCATGTT AACATGCAAGAACATTCAGGTATACACAATGATCCTTTCTATGCCTGGGAGCTTGGGGAGTCAGGTGGAGGTGCA CCAGATATGATTGTTGATTGGCTTCAAGCCGGTTTTCAAGAGTCACCGGTATAG |
| Transcript | >AgabiH97|037980 ATGTCGGAAAACACTTCCTTGATACCGAGAGCAAACCAATACGGTCGTCCTTCCTTTTTCGAAAAGGTCTCGATA TTCTTCAAACTTCTCCTCCTACCCATCGTCTTGGTTTGGACCTTTGTTTTCAAGTGGAGTGGCAGGACCAGAAAG CGCAGTGTTTGTGATGGCCGTATTCGATACGTAGTCACCAAGTTCAATATCCGTCAACTTCAATACCTTTTCGGA ACAACCAGAGGGAACTACACTACTTGGTGCAAGCAAGCGAAACAAGAGCCTCAGATCGAGTCAATCGGTGGAGAT GCAAACCTTCTCTGGATAGGCGAGCGGAGACCAGAGAAAGTCATCTTATATCTACACGGTGGTGGTTTCTTGCTA CCCCCCGGTGTAACAAATATCGCATTTTTCGCTCATGTTGTGACCAAGCTTCGGGAACGCGGTATCAACGCATCC GTTGCGATGCTCGAGTACACTCTCGTCCCAGTAGCTGCTTTTCCCACCCAACTCAAACAAGCTGTGGCTGCCATT AACCACCTCATGAGCCTAGGCGTTGATCCACAAGACATCCAGCTGGCGGGCGACTCTGCAGGTGCAAACTTGATA CTACAAGTTCTTGCCCACCTTTTGCACCCTCTTGAGTATGAAAATGTACCGCCTTTATCCCTTCCTTCTCCTCTC AAAGGTGCCTGCCTAATATCCCCTTGGGTGGATCTCTCGGATATACATGGAACACTCAGTAGCGGCAATTCCACT GATATGCTCACTGCTGGCATTATTCGAGATTGGGGTTCACAGGTCCTCGGCCCCGTGCCAAGGGAGTACCTCGGA TATATTGAAGCAAATAGTGCAAAGGATGATTGGTGGAAGGGCGTCGACGCGTTCGCGGACCGTGTCCTTGTCACG GCAGGCCGGGAAGAGTGTCTCAACAATGAGATTATTCGTTTCCAATCCGTATTTGAAACTTTCCATTCCCATGTT AACATGCAAGAACATTCAGGTATACACAATGATCCTTTCTATGCCTGGGAGCTTGGGGAGTCAGGTGGAGGTGCA CCAGATATGATTGTTGATTGGCTTCAAGCCGGTTTTCAAGAGTCACCGGTATAG |
| Gene | >AgabiH97|037980 ATGTCGGAAAACACTTCCTTGATACCGAGAGCAAACCAATACGGTCGTCCTTCCTTTTTCGAAAAGGTCTCGATA TTCTTCAAACTTCTCCTCCTACGTCAGTGCTACAGCATAGTCTTTGAAGCTGATTTAATTCTTTCCGCGTAGCCA TCGTCTTGGTTTGGACCTTTGTTTTCAAGTGGAGTGGCAGGACCAGAAAGCGCAGTGTTTGTGATGGCCGTATTC GATACGTAGTCACCAAGTTCAATATCCGTCAACTTCAATACCTTTTCGGAACAACCAGAGGGAACTACACTACTT GGTGCAAGCAAGCGAAACAAGAGCCTCAGATCGAGTCAATCGGTGGAGATGCAAACCTTCTCTGGATAGGCGAGC GGAGACCAGAGAAAGTCATCTTATATCTACACGGTGAGCTTTCACTCTCCAAGATTTACATTATTGAAGGCTAAT AATATCATTCTGCTACGTCTGAAACAGGTGGTGGTTTCTTGCTACCCCCCGGTGTAACAAATATCGCATTTTTCG CTCATGTTGTGACCAAGCTTCGGGAACGCGGTATCAACGCATCCGTTGCGATGCTCGAGTACAGTGAGCTCGCTC CAACTGTCCCAAGAATACGGCTTCTGACTATTGATCGAACCATCTTCTTTTAAGCTCTCGTCCCAGTAGCTGCTT TTCCCACCCAACTCAAACAAGCTGTGGCTGCCATTAACCACCTCATGAGCCTAGGCGTTGATCCACAAGACATCC AGCTGGCGGGCGACTCTGCAGGTGCAAACTTGATACTACAAGTTCTTGCCCACCTTTTGCACCCTCTTGAGTATG AAAATGTACCGCCTTTATCCCTTCCTTCTCCTCTCAAAGGTGCCTGCCTAATATCCCCTTGGGTGGATCTCTCGG ATATACATGGAACACTCAGTAGCGGCAATTCCACTGATATGCTCACTGCTGGCATTATTCGAGATTGGGGTTCAC AGGTCCTCGGCCCCGTGCCAAGGGAGTACCTCGGATATATTGAAGCAAATAGTGCAAAGGATGATTGGTGGAAGG GCGTCGACGCGTTCGCGGACCGTGTCCTTGTCACGGCAGGCCGGGAAGAGTGTCTCAACAATGAGATTATTCGTT TCCAATCCGTATTTGAAACTTTCCATTCCCATGTTAACATGCAAGAACATTCAGGTATACACAATGATCCTTTCT ATGCCTGGGAGCTTGGGGAGTCAGGTGGAGGTGCACCAGATATGATTGTTGATTGGCTTCAAGCCGGTTTTCAAG AGTCACCGGTATAG |