Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|037880
Gene name
Locationscaffold_13:1151098..1152772
Strand+
Gene length (bp)1674
Transcript length (bp)1623
Coding sequence length (bp)1623
Protein length (aa) 541

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.5E-05 41 94

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.646 0.5613 0.1258 0.0838 0.2714 0.0071 0.1224 0.1668 0.1179 0.0067

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 67 89 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID1
Orthogroup10492
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|037880
Agaricus bisporus var bisporus H97 AgabiH97|037880 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|037880
MRDMNNLDDNDKNLRAVVMKCWKEEKENEENDNDSKVSTQVLPPELLSVVFLYVCAEESFARNNRHSIFLLASVC
SYWRALVLGMTFLWSRLTLTVNPVSQGDPSVLQYFLDNVKQTPFALCLLFSQKQEYFSVPLGRMSAIEALLLKDK
NRGKLETLRIEGFSLALCGYLPRFQSICRLEIGGIPYLNYWQPDSLQPLDLSNLAGLNQVEFYSSGCSLGVVMPW
TQITSLTLKSEDIYVCVFFFTQCPNLQEFHCFSPLKSNTRVSYPEIVDNFTSEKVENLSWTSNPEQKCVMLFSRL
RLPSLRSLQWYSRSYRRSDIRPDEASALHNLFSGSAFTLSCFRLHNAGSWTIDFIKTILSRAKNLRVLHLTKCKY
KFVIDTLSVLRHEPDGDTFLPLLETLIIQEPEGSIRPSERERQEIQLASHIIPIFQNRDLEKKKSFSLQLSQTAG
LHSKDMRTVYNALRSEGYAFNIWVDSAMTCSVKEVLERERWKKGMRNVPRVSGTQWYTSRNDEDEDQDWDDEPST
RLIREAAGCSLSPTT*
Coding >AgabiH97|037880
ATGCGCGACATGAACAATCTTGACGATAACGACAAAAATTTGAGGGCTGTTGTAATGAAGTGCTGGAAAGAAGAG
AAGGAGAATGAGGAGAATGACAACGATTCCAAAGTTTCAACTCAAGTCCTGCCCCCCGAACTGCTTTCTGTAGTA
TTCCTATACGTATGCGCGGAAGAAAGCTTCGCCAGAAACAACCGACACAGCATCTTTCTACTCGCGTCAGTATGC
TCCTATTGGCGAGCCCTGGTTCTGGGCATGACTTTCCTGTGGTCGCGTCTGACCTTGACAGTCAATCCCGTCTCT
CAAGGAGATCCCTCAGTACTTCAGTACTTCCTCGACAATGTCAAACAGACTCCTTTCGCACTTTGCTTGCTATTT
TCGCAAAAACAAGAATACTTCTCTGTACCTCTCGGGCGTATGTCTGCGATTGAGGCTCTGCTGTTGAAAGATAAA
AATAGGGGCAAGCTAGAGACCCTCCGAATAGAGGGCTTCTCCCTCGCCTTGTGTGGTTATCTCCCCCGATTCCAA
TCCATCTGTCGTCTTGAGATTGGTGGCATCCCATATTTAAATTACTGGCAACCCGATTCTCTTCAACCACTCGAT
CTGTCCAACCTCGCTGGCTTGAATCAAGTTGAATTTTACTCGTCAGGGTGCTCTCTCGGCGTTGTTATGCCCTGG
ACTCAAATCACGTCCTTGACACTCAAGTCCGAAGACATCTATGTATGCGTGTTCTTCTTCACTCAATGCCCCAAC
CTTCAAGAATTCCACTGTTTTTCTCCTCTGAAATCCAATACGCGGGTCTCTTATCCTGAAATTGTTGATAACTTC
ACTTCTGAAAAAGTGGAGAACCTTTCATGGACCTCCAACCCAGAACAGAAATGTGTGATGCTCTTCTCAAGGCTC
CGACTCCCATCGCTACGATCTCTTCAATGGTACAGTCGATCTTATCGAAGGTCTGATATTCGACCCGACGAAGCA
TCCGCTCTACACAACCTTTTCTCTGGTTCTGCGTTCACATTATCTTGTTTCCGACTCCACAACGCAGGATCATGG
ACAATCGATTTCATCAAAACCATTCTCTCTCGCGCCAAGAACTTACGAGTTTTACACCTCACCAAATGCAAATAC
AAATTCGTCATCGACACCCTTTCTGTTCTCAGACACGAACCCGATGGTGACACCTTTCTTCCTCTTCTAGAAACC
CTCATCATACAAGAACCCGAAGGATCCATCCGCCCATCAGAAAGGGAAAGACAAGAAATTCAACTGGCATCGCAT
ATCATTCCTATATTCCAAAATCGGGACCTCGAGAAGAAGAAATCGTTTTCGCTGCAGCTTTCACAGACTGCTGGA
TTACATTCGAAAGATATGCGAACGGTGTATAATGCGCTGCGTTCGGAAGGATATGCGTTTAATATTTGGGTTGAT
TCTGCGATGACATGTTCTGTGAAGGAGGTTTTGGAGCGTGAGCGGTGGAAGAAGGGAATGAGGAATGTTCCTAGG
GTGTCGGGGACTCAATGGTATACGTCACGTAACGACGAGGATGAGGACCAGGATTGGGATGATGAACCTAGTACT
CGGTTGATTAGAGAAGCTGCTGGTTGTTCCTTGTCTCCTACAACTTGA
Transcript >AgabiH97|037880
ATGCGCGACATGAACAATCTTGACGATAACGACAAAAATTTGAGGGCTGTTGTAATGAAGTGCTGGAAAGAAGAG
AAGGAGAATGAGGAGAATGACAACGATTCCAAAGTTTCAACTCAAGTCCTGCCCCCCGAACTGCTTTCTGTAGTA
TTCCTATACGTATGCGCGGAAGAAAGCTTCGCCAGAAACAACCGACACAGCATCTTTCTACTCGCGTCAGTATGC
TCCTATTGGCGAGCCCTGGTTCTGGGCATGACTTTCCTGTGGTCGCGTCTGACCTTGACAGTCAATCCCGTCTCT
CAAGGAGATCCCTCAGTACTTCAGTACTTCCTCGACAATGTCAAACAGACTCCTTTCGCACTTTGCTTGCTATTT
TCGCAAAAACAAGAATACTTCTCTGTACCTCTCGGGCGTATGTCTGCGATTGAGGCTCTGCTGTTGAAAGATAAA
AATAGGGGCAAGCTAGAGACCCTCCGAATAGAGGGCTTCTCCCTCGCCTTGTGTGGTTATCTCCCCCGATTCCAA
TCCATCTGTCGTCTTGAGATTGGTGGCATCCCATATTTAAATTACTGGCAACCCGATTCTCTTCAACCACTCGAT
CTGTCCAACCTCGCTGGCTTGAATCAAGTTGAATTTTACTCGTCAGGGTGCTCTCTCGGCGTTGTTATGCCCTGG
ACTCAAATCACGTCCTTGACACTCAAGTCCGAAGACATCTATGTATGCGTGTTCTTCTTCACTCAATGCCCCAAC
CTTCAAGAATTCCACTGTTTTTCTCCTCTGAAATCCAATACGCGGGTCTCTTATCCTGAAATTGTTGATAACTTC
ACTTCTGAAAAAGTGGAGAACCTTTCATGGACCTCCAACCCAGAACAGAAATGTGTGATGCTCTTCTCAAGGCTC
CGACTCCCATCGCTACGATCTCTTCAATGGTACAGTCGATCTTATCGAAGGTCTGATATTCGACCCGACGAAGCA
TCCGCTCTACACAACCTTTTCTCTGGTTCTGCGTTCACATTATCTTGTTTCCGACTCCACAACGCAGGATCATGG
ACAATCGATTTCATCAAAACCATTCTCTCTCGCGCCAAGAACTTACGAGTTTTACACCTCACCAAATGCAAATAC
AAATTCGTCATCGACACCCTTTCTGTTCTCAGACACGAACCCGATGGTGACACCTTTCTTCCTCTTCTAGAAACC
CTCATCATACAAGAACCCGAAGGATCCATCCGCCCATCAGAAAGGGAAAGACAAGAAATTCAACTGGCATCGCAT
ATCATTCCTATATTCCAAAATCGGGACCTCGAGAAGAAGAAATCGTTTTCGCTGCAGCTTTCACAGACTGCTGGA
TTACATTCGAAAGATATGCGAACGGTGTATAATGCGCTGCGTTCGGAAGGATATGCGTTTAATATTTGGGTTGAT
TCTGCGATGACATGTTCTGTGAAGGAGGTTTTGGAGCGTGAGCGGTGGAAGAAGGGAATGAGGAATGTTCCTAGG
GTGTCGGGGACTCAATGGTATACGTCACGTAACGACGAGGATGAGGACCAGGATTGGGATGATGAACCTAGTACT
CGGTTGATTAGAGAAGCTGCTGGTTGTTCCTTGTCTCCTACAACTTGA
Gene >AgabiH97|037880
ATGCGCGACATGAACAATCTTGACGATAACGACAAAAATTTGAGGGCTGTTGTAATGAAGTGCTGGAAAGAAGAG
AAGGAGAATGAGGAGAATGACGTAACCTTTCAACGCATTCGAACCAGACATCTTGCTCACTTGTGAAAGCAGAAC
GATTCCAAAGTTTCAACTCAAGTCCTGCCCCCCGAACTGCTTTCTGTAGTATTCCTATACGTATGCGCGGAAGAA
AGCTTCGCCAGAAACAACCGACACAGCATCTTTCTACTCGCGTCAGTATGCTCCTATTGGCGAGCCCTGGTTCTG
GGCATGACTTTCCTGTGGTCGCGTCTGACCTTGACAGTCAATCCCGTCTCTCAAGGAGATCCCTCAGTACTTCAG
TACTTCCTCGACAATGTCAAACAGACTCCTTTCGCACTTTGCTTGCTATTTTCGCAAAAACAAGAATACTTCTCT
GTACCTCTCGGGCGTATGTCTGCGATTGAGGCTCTGCTGTTGAAAGATAAAAATAGGGGCAAGCTAGAGACCCTC
CGAATAGAGGGCTTCTCCCTCGCCTTGTGTGGTTATCTCCCCCGATTCCAATCCATCTGTCGTCTTGAGATTGGT
GGCATCCCATATTTAAATTACTGGCAACCCGATTCTCTTCAACCACTCGATCTGTCCAACCTCGCTGGCTTGAAT
CAAGTTGAATTTTACTCGTCAGGGTGCTCTCTCGGCGTTGTTATGCCCTGGACTCAAATCACGTCCTTGACACTC
AAGTCCGAAGACATCTATGTATGCGTGTTCTTCTTCACTCAATGCCCCAACCTTCAAGAATTCCACTGTTTTTCT
CCTCTGAAATCCAATACGCGGGTCTCTTATCCTGAAATTGTTGATAACTTCACTTCTGAAAAAGTGGAGAACCTT
TCATGGACCTCCAACCCAGAACAGAAATGTGTGATGCTCTTCTCAAGGCTCCGACTCCCATCGCTACGATCTCTT
CAATGGTACAGTCGATCTTATCGAAGGTCTGATATTCGACCCGACGAAGCATCCGCTCTACACAACCTTTTCTCT
GGTTCTGCGTTCACATTATCTTGTTTCCGACTCCACAACGCAGGATCATGGACAATCGATTTCATCAAAACCATT
CTCTCTCGCGCCAAGAACTTACGAGTTTTACACCTCACCAAATGCAAATACAAATTCGTCATCGACACCCTTTCT
GTTCTCAGACACGAACCCGATGGTGACACCTTTCTTCCTCTTCTAGAAACCCTCATCATACAAGAACCCGAAGGA
TCCATCCGCCCATCAGAAAGGGAAAGACAAGAAATTCAACTGGCATCGCATATCATTCCTATATTCCAAAATCGG
GACCTCGAGAAGAAGAAATCGTTTTCGCTGCAGCTTTCACAGACTGCTGGATTACATTCGAAAGATATGCGAACG
GTGTATAATGCGCTGCGTTCGGAAGGATATGCGTTTAATATTTGGGTTGATTCTGCGATGACATGTTCTGTGAAG
GAGGTTTTGGAGCGTGAGCGGTGGAAGAAGGGAATGAGGAATGTTCCTAGGGTGTCGGGGACTCAATGGTATACG
TCACGTAACGACGAGGATGAGGACCAGGATTGGGATGATGAACCTAGTACTCGGTTGATTAGAGAAGCTGCTGGT
TGTTCCTTGTCTCCTACAACTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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