© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|036790 |
| Gene name | |
| Location | scaffold_13:843973..844953 |
| Strand | - |
| Gene length (bp) | 980 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 927 |
| Protein length (aa) | 309 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.5E-10 | 75 | 188 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Signal peptide | 0.4354 | 0.4473 | 0.3547 | 0.0587 | 0.129 | 0.1147 | 0.3849 | 0.3466 | 0.1139 | 0.3191 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| Orthofinder run ID | 1 |
| Orthogroup | 108 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|036790 MFLVAHATRISFLALNLIPVSSTQLNSILLISLIENLFPLLETLPPSLGNISPLELEVNPTVEQEQRIHFQGIQD GPVKMWEALEAVHRQKRAGMRFNAYDDLFSIRKLEEESLQSLINRVESSKRKIKELRPSSFTLEQLDDELASMAL IRALPDEFSGFTSSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGTSQALAARSGSQFATKTCDFCGREGHKFS ECKTFERAKSRAQEDAQKPRTPYKRANKAQEESGSSSSTQALEKAQRVTEFAGNASTPHPSPSPSPSTPLQLDAD FYWLADTC* |
| Coding | >AgabiH97|036790 ATGTTTTTGGTGGCTCATGCCACTCGCATCTCATTTCTTGCTCTCAATCTCATTCCTGTATCCTCAACTCAGCTT AATTCAATCTTATTAATTTCTCTCATCGAAAACTTATTTCCGTTACTCGAAACTCTCCCTCCATCTCTCGGCAAC ATATCCCCTCTCGAACTCGAAGTCAACCCCACAGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGAC GGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTAT GATGACCTCTTTTCCATCCGAAAACTCGAGGAGGAATCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAA CGAAAAATCAAGGAACTCCGCCCCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTC ATTAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACGTCGTCTCTATTGCTTATGGATAAGCTGGACAAGACTACA GTCCACCAGGCCTTTGTCACTGAGGACCTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCT CTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAAACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCT GAATGCAAAACCTTCGAGAGAGCAAAGTCACGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGG GCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGCTCGACTCAGGCTCTCGAAAAAGCGCAGAGAGTCACCGAG TTTGCTGGTAATGCAAGTACCCCTCATCCCTCACCTTCTCCCTCACCTTCTACACCTCTCCAGCTCGATGCTGAC TTCTACTGGCTTGCAGATACATGTTAA |
| Transcript | >AgabiH97|036790 ATGTTTTTGGTGGCTCATGCCACTCGCATCTCATTTCTTGCTCTCAATCTCATTCCTGTATCCTCAACTCAGCTT AATTCAATCTTATTAATTTCTCTCATCGAAAACTTATTTCCGTTACTCGAAACTCTCCCTCCATCTCTCGGCAAC ATATCCCCTCTCGAACTCGAAGTCAACCCCACAGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGAC GGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTAT GATGACCTCTTTTCCATCCGAAAACTCGAGGAGGAATCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAA CGAAAAATCAAGGAACTCCGCCCCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTC ATTAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACGTCGTCTCTATTGCTTATGGATAAGCTGGACAAGACTACA GTCCACCAGGCCTTTGTCACTGAGGACCTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCT CTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAAACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCT GAATGCAAAACCTTCGAGAGAGCAAAGTCACGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGG GCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGCTCGACTCAGGCTCTCGAAAAAGCGCAGAGAGTCACCGAG TTTGCTGGTAATGCAAGTACCCCTCATCCCTCACCTTCTCCCTCACCTTCTACACCTCTCCAGCTCGATGCTGAC TTCTACTGGCTTGCAGATACATGTTAA |
| Gene | >AgabiH97|036790 ATGTTTTTGGTGGCTCATGCCACTCGTGCTTGGACCTAGAGTAAAACCTATATAAACTGCCTCATAATTCGTAGT TAGGCATCTCATTTCTTGCTCTCAATCTCATTCCTGTATCCTCAACTCAGCTTAATTCAATCTTATTAATTTCTC TCATCGAAAACTTATTTCCGTTACTCGAAACTCTCCCTCCATCTCTCGGCAACATATCCCCTCTCGAACTCGAAG TCAACCCCACAGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACGGTCCTGTGAAGATGTGGGAGG CTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTTTCCATCCGAA AACTCGAGGAGGAATCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCC CCTCTTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATTAGAGCGCTCCCGGACGAGT TTTCCGGCTTCACGTCGTCTCTATTGCTTATGGATAAGCTGGACAAGACTACAGTCCACCAGGCCTTTGTCACTG AGGACCTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCC AATTTGCGACGAAAACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAGAG CAAAGTCACGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGT CTGGGAGCTCTAGCTCGACTCAGGCTCTCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGTAATGCAAGTACCC CTCATCCCTCACCTTCTCCCTCACCTTCTACACCTCTCCAGCTCGATGCTGACTTCTACTGGCTTGCAGATACAT GTTAA |