Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|035990
Gene name
Location	scaffold_13:634296..636468
Strand	-
Gene length (bp)	2172
Transcript length (bp)	1635
Coding sequence length (bp)	1635
Protein length (aa)	545

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04820	Trp_halogenase	Tryptophan halogenase	1.2E-14	21	106
PF04820	Trp_halogenase	Tryptophan halogenase	3.1E-12	189	421
PF01494	FAD_binding_3	FAD binding domain	6.5E-07	19	263
PF13450	NAD_binding_8	NAD(P)-binding Rossmann-like domain	4.0E-05	23	51

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q0VZ69|THAL_CHOCO	Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1	16	497	2.0E-69

GO

GO Term	Description	Terminal node
GO:0004497	monooxygenase activity	Yes
GO:0071949	FAD binding	Yes
GO:0000166	nucleotide binding	No
GO:0003674	molecular_function	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0097159	organic cyclic compound binding	No
GO:0016491	oxidoreductase activity	No
GO:1901363	heterocyclic compound binding	No
GO:0036094	small molecule binding	No
GO:0003824	catalytic activity	No
GO:0050660	flavin adenine dinucleotide binding	No
GO:0043168	anion binding	No
GO:1901265	nucleoside phosphate binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 34	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|035990 MPTLRSKNSISQPSPPASCSILVIGGGPAGSYSAACLAQEGFTVTLLEAENFPRYHVGESMLPSMRHFLRFIDAD DRFDAFGFIQKHGAAFQFNAHKREGFTNFVSDNPSNYTWNVTRAEADALILNRARELGVRIFENHRVTEIKFSQS ITKANNVKAAPPASDKQLGIEGQVPVSAKWKNVSNGKTGQISFDWVIDASGRNGVMSRALGLRKYNQSLKNVAYW GYWKGTQEYRHADCQVQPPFFEALHDESGWAWFIPLHNGKTSVGVVMDENVSKSKKTAMERKGDTTLLQQHYLKE LKTNAPKINRLLEQAELFEYSGGPKIRTASDYSYSSTSYAGTNYRIVGDAGAFIDPFFSSGVHLALSGGLSAAAS IAATIRSECSTLQGAEWHNSRIGTSYTRFLMIVLSAYRQMRSQELPVLSDIDTDNFDKAFDLFRPVIQGDVDVKK PLSEDSLRQTIDFCTQAFEPASLEEWHKEDDNSRTEEDETSEQAKAKAAQRMADVVAAKKTLRAEDMFHIGKFVT DKFNGFSIRFEKGKLGLEA*
Coding	>AgabiH97|035990 ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTCCTGCATCTTGCTCGATCCTCGTCATCGGG GGAGGTCCCGCAGGCTCATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAG AATTTCCCAAGGTATCATGTCGGTGAAAGCATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGAC GACAGGTTCGACGCCTTTGGCTTCATCCAGAAGCACGGCGCGGCATTCCAATTCAATGCCCACAAACGTGAAGGC TTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGACTCGTGCGGAGGCTGATGCATTGATT CTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATCT ATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCCA GTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAGT GGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTGG GGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACAT GACGAATCTGGCTGGGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAAT GTTTCAAAGTCAAAGAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAG CTCAAGACGAACGCCCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAA ATCAGGACTGCTAGCGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCG GGAGCGTTTATTGACCCATTCTTCTCTTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCT ATCGCCGCCACCATTCGCTCCGAATGCAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCA TACACTCGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAAATGCGATCGCAGGAGCTCCCGGTCTTGTCGGAT ATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGTCCAGTCATCCAAGGAGATGTCGACGTCAAGAAG CCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCGAGCTTGGAAGAG TGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCGAAAGCTGCGCAA CGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGAAAATTTGTGACC GACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG
Transcript	>AgabiH97|035990 ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTCCTGCATCTTGCTCGATCCTCGTCATCGGG GGAGGTCCCGCAGGCTCATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAG AATTTCCCAAGGTATCATGTCGGTGAAAGCATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGAC GACAGGTTCGACGCCTTTGGCTTCATCCAGAAGCACGGCGCGGCATTCCAATTCAATGCCCACAAACGTGAAGGC TTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGACTCGTGCGGAGGCTGATGCATTGATT CTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATCT ATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCCA GTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAGT GGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTGG GGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACAT GACGAATCTGGCTGGGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAAT GTTTCAAAGTCAAAGAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAG CTCAAGACGAACGCCCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAA ATCAGGACTGCTAGCGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCG GGAGCGTTTATTGACCCATTCTTCTCTTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCT ATCGCCGCCACCATTCGCTCCGAATGCAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCA TACACTCGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAAATGCGATCGCAGGAGCTCCCGGTCTTGTCGGAT ATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGTCCAGTCATCCAAGGAGATGTCGACGTCAAGAAG CCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCGAGCTTGGAAGAG TGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCGAAAGCTGCGCAA CGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGAAAATTTGTGACC GACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG
Gene	>AgabiH97|035990 ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTGTGCGTTTTTATTTCACTATACGGAGTCAC TCTTGTCCGGACTCATCACCATCTTATAGCCTGCATCTTGCTCGATCCTCGTCATCGGGGGAGGTCCCGCAGGCT CATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAGAATTTCCCAAGGTTTG TGAAGTCAATGATTTTAACAACGATCTTTAATTGACATCCTTGGCACTCACTATCAGGTATCATGTCGGTGAAAG CATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGACGACAGGTTCGACGCCTTTGGCTTCATCCA GAAGGTATACTAAGCCAATAGCTGTACCCCCATTTCTGACTGACACACCCATCTAGCACGGCGCGGCATTCCAAT TCAATGCCCACAAACGTGAAGGCTGTACGTCCACATCGTTTCATTATTGTCTAGTCATCCTGATGGACCATACGC TCTGACAGTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGGTGAGTTTTTAGACCATGTA ATCTCGGCTAATGCTTGGCATCATTTATCTCAATATTGAATTAATATAGACTCGTGCGGAGGCTGATGCATTGAT TCTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATC TATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCC AGTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAG TGGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTG GGGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACA TGGTATGTCAATGTTTTCGCTCGTCATGTAGACAGCTGATTGAATTGTCCTCAAATTAATAGACGAATCTGGCTG GGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAATGTTTCAAAGTCAAA GAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAGCTCAAGACGAACGC CCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAAATCAGGACTGCTAG CGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCGGGAGGTAAGTACTT GATAGAGGCTTTGACGAGACAGGAGCCCTGATTAATAACCTTTTGTACGACAGCGTTTATTGACCCATTCTTCTC TTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCTATCGCCGCCACCATTCGCTCCGAATG CAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCATACACTCGGTACGTAATTCCGTACCT TTCTGCATTCCTAGTCGATTTATAAATTCCCTTTCTCTCAGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAA ATGCGATCGCAGGAGCTCCCGGTCTTGTCGGATATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGT CCAGGTATACCCATTTATACGCTTCAATAAGCTTATTAGTAAACCTTTTCTACTTTAGTCATCCAAGGAGATGTC GACGTCAAGAAGCCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCG AGCTTGGAAGAGTGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCG AAAGCTGCGCAACGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGA AAATTTGTGACCGACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG