Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|035990
Gene name
Locationscaffold_13:634296..636468
Strand-
Gene length (bp)2172
Transcript length (bp)1635
Coding sequence length (bp)1635
Protein length (aa) 545

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04820 Trp_halogenase Tryptophan halogenase 1.2E-14 21 106
PF04820 Trp_halogenase Tryptophan halogenase 3.1E-12 189 421
PF01494 FAD_binding_3 FAD binding domain 6.5E-07 19 263
PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain 4.0E-05 23 51

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q0VZ69|THAL_CHOCO Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1 16 497 2.0E-69

GO

GO Term Description Terminal node
GO:0004497 monooxygenase activity Yes
GO:0071949 FAD binding Yes
GO:0000166 nucleotide binding No
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:0016491 oxidoreductase activity No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:0003824 catalytic activity No
GO:0050660 flavin adenine dinucleotide binding No
GO:0043168 anion binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|035990
MPTLRSKNSISQPSPPASCSILVIGGGPAGSYSAACLAQEGFTVTLLEAENFPRYHVGESMLPSMRHFLRFIDAD
DRFDAFGFIQKHGAAFQFNAHKREGFTNFVSDNPSNYTWNVTRAEADALILNRARELGVRIFENHRVTEIKFSQS
ITKANNVKAAPPASDKQLGIEGQVPVSAKWKNVSNGKTGQISFDWVIDASGRNGVMSRALGLRKYNQSLKNVAYW
GYWKGTQEYRHADCQVQPPFFEALHDESGWAWFIPLHNGKTSVGVVMDENVSKSKKTAMERKGDTTLLQQHYLKE
LKTNAPKINRLLEQAELFEYSGGPKIRTASDYSYSSTSYAGTNYRIVGDAGAFIDPFFSSGVHLALSGGLSAAAS
IAATIRSECSTLQGAEWHNSRIGTSYTRFLMIVLSAYRQMRSQELPVLSDIDTDNFDKAFDLFRPVIQGDVDVKK
PLSEDSLRQTIDFCTQAFEPASLEEWHKEDDNSRTEEDETSEQAKAKAAQRMADVVAAKKTLRAEDMFHIGKFVT
DKFNGFSIRFEKGKLGLEA*
Coding >AgabiH97|035990
ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTCCTGCATCTTGCTCGATCCTCGTCATCGGG
GGAGGTCCCGCAGGCTCATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAG
AATTTCCCAAGGTATCATGTCGGTGAAAGCATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGAC
GACAGGTTCGACGCCTTTGGCTTCATCCAGAAGCACGGCGCGGCATTCCAATTCAATGCCCACAAACGTGAAGGC
TTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGACTCGTGCGGAGGCTGATGCATTGATT
CTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATCT
ATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCCA
GTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAGT
GGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTGG
GGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACAT
GACGAATCTGGCTGGGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAAT
GTTTCAAAGTCAAAGAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAG
CTCAAGACGAACGCCCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAA
ATCAGGACTGCTAGCGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCG
GGAGCGTTTATTGACCCATTCTTCTCTTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCT
ATCGCCGCCACCATTCGCTCCGAATGCAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCA
TACACTCGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAAATGCGATCGCAGGAGCTCCCGGTCTTGTCGGAT
ATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGTCCAGTCATCCAAGGAGATGTCGACGTCAAGAAG
CCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCGAGCTTGGAAGAG
TGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCGAAAGCTGCGCAA
CGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGAAAATTTGTGACC
GACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG
Transcript >AgabiH97|035990
ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTCCTGCATCTTGCTCGATCCTCGTCATCGGG
GGAGGTCCCGCAGGCTCATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAG
AATTTCCCAAGGTATCATGTCGGTGAAAGCATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGAC
GACAGGTTCGACGCCTTTGGCTTCATCCAGAAGCACGGCGCGGCATTCCAATTCAATGCCCACAAACGTGAAGGC
TTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGACTCGTGCGGAGGCTGATGCATTGATT
CTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATCT
ATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCCA
GTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAGT
GGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTGG
GGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACAT
GACGAATCTGGCTGGGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAAT
GTTTCAAAGTCAAAGAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAG
CTCAAGACGAACGCCCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAA
ATCAGGACTGCTAGCGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCG
GGAGCGTTTATTGACCCATTCTTCTCTTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCT
ATCGCCGCCACCATTCGCTCCGAATGCAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCA
TACACTCGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAAATGCGATCGCAGGAGCTCCCGGTCTTGTCGGAT
ATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGTCCAGTCATCCAAGGAGATGTCGACGTCAAGAAG
CCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCGAGCTTGGAAGAG
TGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCGAAAGCTGCGCAA
CGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGAAAATTTGTGACC
GACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG
Gene >AgabiH97|035990
ATGCCTACTCTACGAAGCAAGAACTCTATCTCTCAACCATCTCCTGTGCGTTTTTATTTCACTATACGGAGTCAC
TCTTGTCCGGACTCATCACCATCTTATAGCCTGCATCTTGCTCGATCCTCGTCATCGGGGGAGGTCCCGCAGGCT
CATATTCTGCCGCTTGCCTTGCCCAAGAAGGGTTTACCGTCACCTTGCTCGAAGCGGAGAATTTCCCAAGGTTTG
TGAAGTCAATGATTTTAACAACGATCTTTAATTGACATCCTTGGCACTCACTATCAGGTATCATGTCGGTGAAAG
CATGCTTCCATCCATGAGGCACTTTTTACGTTTCATCGATGCGGACGACAGGTTCGACGCCTTTGGCTTCATCCA
GAAGGTATACTAAGCCAATAGCTGTACCCCCATTTCTGACTGACACACCCATCTAGCACGGCGCGGCATTCCAAT
TCAATGCCCACAAACGTGAAGGCTGTACGTCCACATCGTTTCATTATTGTCTAGTCATCCTGATGGACCATACGC
TCTGACAGTTACAAACTTTGTATCGGACAATCCAAGTAACTATACTTGGAATGTGGTGAGTTTTTAGACCATGTA
ATCTCGGCTAATGCTTGGCATCATTTATCTCAATATTGAATTAATATAGACTCGTGCGGAGGCTGATGCATTGAT
TCTTAATCGCGCCCGCGAACTCGGGGTTCGGATTTTCGAGAATCATCGTGTCACGGAAATCAAGTTTTCTCAATC
TATCACTAAGGCCAATAACGTGAAAGCTGCGCCTCCGGCCAGTGATAAACAATTAGGCATTGAGGGTCAAGTTCC
AGTGTCCGCCAAGTGGAAAAATGTTTCCAATGGCAAGACTGGTCAAATTTCGTTTGATTGGGTTATCGACGCCAG
TGGTCGAAATGGTGTTATGTCGCGCGCTTTGGGTCTGCGAAAGTATAATCAGAGCCTGAAGAATGTTGCGTACTG
GGGTTACTGGAAGGGAACTCAAGAGTACAGGCACGCTGATTGTCAGGTTCAACCACCATTCTTTGAAGCATTACA
TGGTATGTCAATGTTTTCGCTCGTCATGTAGACAGCTGATTGAATTGTCCTCAAATTAATAGACGAATCTGGCTG
GGCTTGGTTCATCCCCTTGCATAACGGTAAAACATCAGTCGGAGTTGTCATGGACGAAAATGTTTCAAAGTCAAA
GAAAACGGCCATGGAAAGGAAAGGCGATACGACTCTCCTCCAACAGCACTATCTAAAGGAGCTCAAGACGAACGC
CCCAAAGATCAACCGCTTGCTTGAGCAAGCGGAATTGTTTGAATATTCTGGAGGACCTAAAATCAGGACTGCTAG
CGATTACAGTTACTCCAGTACTTCGTATGCCGGGACAAATTATCGGATAGTCGGCGACGCGGGAGGTAAGTACTT
GATAGAGGCTTTGACGAGACAGGAGCCCTGATTAATAACCTTTTGTACGACAGCGTTTATTGACCCATTCTTCTC
TTCTGGAGTCCACTTGGCTCTTTCTGGCGGGTTATCCGCCGCAGCCTCTATCGCCGCCACCATTCGCTCCGAATG
CAGTACTCTCCAAGGGGCTGAGTGGCACAATTCCAGGATTGGAACCTCATACACTCGGTACGTAATTCCGTACCT
TTCTGCATTCCTAGTCGATTTATAAATTCCCTTTCTCTCAGGTTCCTAATGATAGTCCTAAGTGCTTATCGACAA
ATGCGATCGCAGGAGCTCCCGGTCTTGTCGGATATTGACACAGACAACTTTGACAAGGCGTTTGACCTCTTCCGT
CCAGGTATACCCATTTATACGCTTCAATAAGCTTATTAGTAAACCTTTTCTACTTTAGTCATCCAAGGAGATGTC
GACGTCAAGAAGCCCCTGTCAGAAGATTCATTGCGTCAAACAATTGACTTTTGTACACAGGCCTTTGAGCCCGCG
AGCTTGGAAGAGTGGCATAAGGAGGATGATAATAGCCGGACAGAAGAAGACGAGACTAGCGAACAAGCAAAGGCG
AAAGCTGCGCAACGAATGGCTGACGTTGTGGCAGCGAAGAAGACGTTACGTGCGGAGGATATGTTCCATATTGGA
AAATTTGTGACCGACAAATTTAATGGCTTCTCTATTCGGTTTGAGAAGGGAAAGCTCGGTCTGGAAGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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