Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|035950
Gene name
Location	scaffold_13:626812..628463
Strand	-
Gene length (bp)	1651
Transcript length (bp)	1443
Coding sequence length (bp)	1443
Protein length (aa)	481

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10281	Ish1	Putative nuclear envelope organisation protein	2.2E-06	91	124
PF10281	Ish1	Putative nuclear envelope organisation protein	1.2E-11	181	217
PF10281	Ish1	Putative nuclear envelope organisation protein	8.5E-07	226	262
PF10281	Ish1	Putative nuclear envelope organisation protein	1.5E-09	273	307
PF10281	Ish1	Putative nuclear envelope organisation protein	3.7E-10	317	350

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q03104\|MSC1_YEAST	Meiotic sister chromatid recombination protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSC1 PE=1 SV=1	9	387	1.0E-06

GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|035950 MRPSTIFLSTLALAAAAVATSGSQPAFASWSPEQLSDWLKEHQVSVPKHAKSSASDLQNLVAENWYSASAWTEDQ YRNAQKTFSDVQDTSFETWDESRLREFLLRQGIVAPKGNREQLALLAKSQYKGYEAAAKSYSATAGSASAEASRT VESYASKASAAIAQLETDATRAIDRSKDYVFSTWDDNRLRSYLESKGLIKTSAEKKRDELLAMAEDYYNKASTPV WEAWSDSYMHDWLVSHDVIKSDFEKNRDKLRAQLESYYYTPADKVWTTWSDSELRGWLIKHGYVRSDTQISRDKM LKMVEENYLSVKDTVLSAWSDNQLRQWLIDNGYIRSDAEVKRDELVKLANEKFNDAWAKTASYLTWPDARLRAYL RERGVAENELPTNRSGLLQETRVRWVQAQGRAEAIVGKIRDIVNEGVGKAEDALYNIFNILNSKVYHGSEEASRV QEEETSELKGKKAEMEDRVGEKAEKVKAEL*
Coding	>AgabiH97\|035950 ATGCGACCAAGCACTATATTCTTATCGACTCTCGCCCTCGCAGCAGCGGCTGTTGCAACCTCAGGTTCTCAGCCT GCATTCGCCTCCTGGTCCCCCGAGCAACTCTCAGACTGGCTCAAGGAGCACCAAGTTTCTGTTCCGAAACACGCG AAGAGTTCAGCCTCAGACCTTCAGAACCTCGTAGCGGAAAACTGGTATTCGGCGTCCGCCTGGACTGAAGACCAA TATAGAAATGCCCAGAAAACTTTCTCCGACGTTCAGGACACTTCTTTTGAGACATGGGACGAATCGCGCCTCCGC GAGTTTCTACTTCGTCAGGGTATCGTCGCACCGAAAGGTAACAGGGAGCAGCTGGCCCTACTCGCCAAAAGCCAG TACAAGGGCTATGAAGCGGCAGCCAAATCATATAGCGCCACTGCAGGATCAGCATCTGCCGAGGCAAGCAGGACC GTGGAGAGCTATGCATCAAAAGCTTCTGCGGCTATCGCTCAGCTAGAGACGGATGCTACTCGAGCGATCGACAGG TCCAAAGATTACGTTTTCTCGACTTGGGACGATAATAGGTTGAGGTCTTATTTGGAGAGCAAAGGGTTGATCAAG ACCTCCGCTGAGAAGAAGAGAGACGAATTGTTAGCCATGGCGGAGGATTATTACAACAAGGCGTCGACTCCAGTT TGGGAGGCTTGGAGTGATTCGTATATGCACGACTGGCTAGTGTCCCACGATGTGATCAAATCCGACTTTGAGAAA AACCGAGACAAGCTACGCGCCCAGCTTGAGAGTTACTATTATACCCCCGCCGACAAGGTTTGGACCACCTGGTCA GACTCGGAATTGCGGGGATGGCTCATCAAACACGGCTACGTCAGAAGTGACACCCAAATAAGCAGAGATAAGATG TTGAAGATGGTCGAAGAAAATTACTTATCTGTGAAGGACACTGTTCTTTCTGCCTGGTCTGATAACCAGCTCCGG CAATGGCTCATCGATAATGGGTATATTCGATCTGATGCCGAAGTTAAACGTGATGAGCTCGTAAAGTTGGCCAAC GAAAAGTTCAACGATGCTTGGGCGAAGACTGCTTCATACCTGACGTGGCCAGATGCGCGGCTCCGTGCTTACCTC CGTGAACGTGGCGTGGCAGAAAACGAGTTACCCACCAACAGATCGGGTCTCTTGCAAGAGACACGCGTCCGCTGG GTGCAGGCTCAAGGCAGAGCGGAGGCAATAGTCGGGAAGATTCGTGATATTGTCAATGAAGGCGTTGGCAAAGCT GAGGATGCGCTCTACAACATATTCAATATTCTGAACTCCAAAGTGTATCATGGGTCTGAGGAGGCTAGTCGTGTT CAAGAAGAGGAGACGAGCGAGTTGAAAGGGAAAAAAGCAGAAATGGAAGACAGGGTCGGAGAGAAGGCGGAGAAA GTCAAAGCAGAGTTGTAA
Transcript	>AgabiH97\|035950 ATGCGACCAAGCACTATATTCTTATCGACTCTCGCCCTCGCAGCAGCGGCTGTTGCAACCTCAGGTTCTCAGCCT GCATTCGCCTCCTGGTCCCCCGAGCAACTCTCAGACTGGCTCAAGGAGCACCAAGTTTCTGTTCCGAAACACGCG AAGAGTTCAGCCTCAGACCTTCAGAACCTCGTAGCGGAAAACTGGTATTCGGCGTCCGCCTGGACTGAAGACCAA TATAGAAATGCCCAGAAAACTTTCTCCGACGTTCAGGACACTTCTTTTGAGACATGGGACGAATCGCGCCTCCGC GAGTTTCTACTTCGTCAGGGTATCGTCGCACCGAAAGGTAACAGGGAGCAGCTGGCCCTACTCGCCAAAAGCCAG TACAAGGGCTATGAAGCGGCAGCCAAATCATATAGCGCCACTGCAGGATCAGCATCTGCCGAGGCAAGCAGGACC GTGGAGAGCTATGCATCAAAAGCTTCTGCGGCTATCGCTCAGCTAGAGACGGATGCTACTCGAGCGATCGACAGG TCCAAAGATTACGTTTTCTCGACTTGGGACGATAATAGGTTGAGGTCTTATTTGGAGAGCAAAGGGTTGATCAAG ACCTCCGCTGAGAAGAAGAGAGACGAATTGTTAGCCATGGCGGAGGATTATTACAACAAGGCGTCGACTCCAGTT TGGGAGGCTTGGAGTGATTCGTATATGCACGACTGGCTAGTGTCCCACGATGTGATCAAATCCGACTTTGAGAAA AACCGAGACAAGCTACGCGCCCAGCTTGAGAGTTACTATTATACCCCCGCCGACAAGGTTTGGACCACCTGGTCA GACTCGGAATTGCGGGGATGGCTCATCAAACACGGCTACGTCAGAAGTGACACCCAAATAAGCAGAGATAAGATG TTGAAGATGGTCGAAGAAAATTACTTATCTGTGAAGGACACTGTTCTTTCTGCCTGGTCTGATAACCAGCTCCGG CAATGGCTCATCGATAATGGGTATATTCGATCTGATGCCGAAGTTAAACGTGATGAGCTCGTAAAGTTGGCCAAC GAAAAGTTCAACGATGCTTGGGCGAAGACTGCTTCATACCTGACGTGGCCAGATGCGCGGCTCCGTGCTTACCTC CGTGAACGTGGCGTGGCAGAAAACGAGTTACCCACCAACAGATCGGGTCTCTTGCAAGAGACACGCGTCCGCTGG GTGCAGGCTCAAGGCAGAGCGGAGGCAATAGTCGGGAAGATTCGTGATATTGTCAATGAAGGCGTTGGCAAAGCT GAGGATGCGCTCTACAACATATTCAATATTCTGAACTCCAAAGTGTATCATGGGTCTGAGGAGGCTAGTCGTGTT CAAGAAGAGGAGACGAGCGAGTTGAAAGGGAAAAAAGCAGAAATGGAAGACAGGGTCGGAGAGAAGGCGGAGAAA GTCAAAGCAGAGTTGTAA
Gene	>AgabiH97\|035950 ATGCGACCAAGCACTATATTCTTATCGACTCTCGCCCTCGCAGCAGCGGCTGTTGCAACCTCAGGTTCTCAGCCT GCATTCGCCTCCTGGTCCCCCGAGCAACTCTCAGACTGGCTCAAGGAGCACCAAGTTTCTGTTCCGAAACACGCG AAGAGTTCAGCCTCAGACCTTCAGAACCTCGTAGCGGAAAACTGGTATTCGGCGTCCGCCTGGACTGAAGACCAA TATAGAAATGCCCAGAAAACTTTCTCCGACGTTCAGGACACTTCTTTTGAGACATGGGACGAATCGCGCCTCCGC GAGTTTCTACTTCGTCAGGGTATCGTCGCACCGAAAGGTAACAGGGAGCAGCTGGCCCTACTCGCCAAAAGCCAG TACAAGGGCTATGAAGCGGCAGCCAAATCATATAGCGCCACTGCAGGATCAGCATCTGCCGAGGCAAGCAGGACC GTGGAGAGCTATGCATCAAAAGCTTCTGCGGCTATCGCTCAGCTAGAGACGGATGCTACTCGAGCGATCGACAGG TCCAAAGATTACGTTTTCTCGACTTGGGACGATAATAGGTTGAGGTCTTATTTGGAGAGCAAAGGGTTGATCAAG ACCTCCGCTGAGAAGAAGAGAGACGAATTGTTAGCCATGGCGGAGGATTATTACAACAAGGCGTCGACTCCAGTT TGGGAGGCTTGGAGTGATTCGTATATGGTGTGTATCTCTCTTTCTCGCCACGGACGATGATTTATGAAGGTTGCC TTCAGCACGACTGGCTAGTGTCCCACGATGTGATCAAATCCGACTTTGAGAAAAACCGAGACAAGCTACGCGCCC AGCTTGAGAGTTACTATTATACCCCCGCCGACAAGGTTTGGACCACCTGGTCAGACTCGGAATTGCGGGGATGGC TCATCAAACACGGCTACGTCAGAAGTGACACCCAAATAAGCAGAGATAAGATGTTGAAGATGGTCGAGTACGTCA TTCTTGATGTTGACAATTAGTCTCTGCTGATCTCGAGATACAGAGAAAATTACTTATCTGTGAAGGACACTGTTC TTTCTGCCTGGTCTGATAACCAGCTCCGGCAATGGCTCATCGATAATGGGTATATTCGATCTGATGCCGAAGTTA AACGTGATGAGCTCGTAAAGTTGGCCAACGAAAAGTACGTTCACAATGGTTCCTGGGATTAAGGATGGAGACTGA TTTATGACCTCAGGTTCAACGATGCTTGGGCGAAGACTGCTTCATACCTGACGTGGCCAGATGCGCGGCTCCGTG CTTACCTCCGTGAACGTGGCGTGGCAGAAAACGAGTTACCCACCAACAGATCGGGTCTCTTGCGTATGTATATCT TCGACGCTCTTTTTTCGTGGCTGACGAGGAGAAAACAGAAGAGACACGCGTCCGCTGGGTGCAGGCTCAAGGCAG AGCGGAGGCAATAGTCGGGAAGATTCGTGATATTGTCAATGAAGGCGTTGGCAAAGCTGAGGATGCGCTCTACAA CATATTCAATATTCTGAACTCCAAAGTGTATCATGGGTCTGAGGAGGCTAGTCGTGTTCAAGAAGAGGAGACGAG CGAGTTGAAAGGGAAAAAAGCAGAAATGGAAGACAGGGTCGGAGAGAAGGCGGAGAAAGTCAAAGCAGAGTTGTA A

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