© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|035830 |
| Gene name | |
| Location | scaffold_13:587233..588426 |
| Strand | - |
| Gene length (bp) | 1193 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13532 | 2OG-FeII_Oxy_2 | 2OG-Fe(II) oxygenase superfamily | 1.8E-13 | 42 | 229 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5PQ59|ALKB6_XENLA | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1 | 3 | 235 | 7.0E-45 |
| sp|Q8K2U2|ALKB6_MOUSE | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=3 | 3 | 237 | 1.0E-42 |
| sp|Q3KRA9|ALKB6_HUMAN | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Homo sapiens GN=ALKBH6 PE=1 SV=2 | 3 | 237 | 8.0E-42 |
| sp|Q6IQE9|ALKB6_DANRE | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio rerio GN=alkbh6 PE=2 SV=1 | 3 | 240 | 1.0E-39 |
| sp|Q5UR03|YL905_MIMIV | Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=3 SV=1 | 3 | 172 | 1.0E-10 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 38.61 | 19.58 | 57.63 |
| Initials | Initials knots | 48.63 | 26.40 | 70.86 |
| Pileal_Stipeal_center | Stage I stipe center | 3.77 | 1.30 | 6.24 |
| Pileal_Stipeal_shell | Stage I stipe shell | 5.29 | 1.94 | 8.64 |
| DIF_stipe_center | Stage II stipe center | 1.21 | 0.19 | 2.23 |
| DIF_stipe_shell | Stage II stipe shell | 2.33 | 0.65 | 4.01 |
| DIF_stipe_skin | Stage II stipe skin | 4.83 | 1.76 | 7.91 |
| DIF_cap_skin | Stage II cap skin | 6.72 | 2.72 | 10.72 |
| DIF_cap_tissue | Stage II cap tissue | 5.44 | 2.10 | 8.79 |
| DIF_gill_tissue | Stage II gill tissue | 4.74 | 1.70 | 7.78 |
| YFB_stipe_center | Young fruiting body stipe center | 3.86 | 1.26 | 6.46 |
| YFB_stipe_shell | Young fruiting body stipe shell | 3.92 | 1.36 | 6.48 |
| YFB_stipe_skin | Young fruiting body stipe skin | 4.95 | 1.78 | 8.11 |
| YFB_cap_skin | Young fruiting body cap skin | 7.82 | 3.28 | 12.37 |
| YFB_cap_tissue | Young fruiting body cap tissue | 4.34 | 1.52 | 7.16 |
| YFB_gill_tissue | Young fruiting body gill tissue | 7.87 | 3.10 | 12.64 |
| YFB_veil | Young fruiting body veil | 4.94 | 1.78 | 8.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.602108 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.773657 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.789667 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.961047 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.283761 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.915128 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.282996 | no |
| DIF_gill_tissue | YFB_veil | 0.963064 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.986025 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.713197 | no |
| YFB_stipe_center | YFB_cap_skin | 0.110231 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.883277 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.110231 | no |
| YFB_stipe_center | YFB_veil | 0.714814 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.730947 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.101705 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.898530 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.101862 | no |
| YFB_stipe_shell | YFB_veil | 0.732702 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.336047 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.863847 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.335330 | no |
| YFB_stipe_skin | YFB_veil | 0.996297 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.186066 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.993141 | no |
| YFB_cap_skin | YFB_veil | 0.345193 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.183436 | no |
| YFB_cap_tissue | YFB_veil | 0.868718 | no |
| YFB_gill_tissue | YFB_veil | 0.340458 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.731405 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.978597 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.962601 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.666886 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.085726 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.849399 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.085045 | no |
| Pileal_Stipeal_center | YFB_veil | 0.668821 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.560882 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.030134 | yes |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.378468 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.704100 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.217648 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.496892 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.892176 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.607634 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.624557 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.936428 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.443923 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.775397 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.443173 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.934265 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.004160 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.075908 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.913186 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.711493 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.973267 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.007439 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.029164 | yes |
| DIF_stipe_center | YFB_stipe_shell | 0.023415 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.006387 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.014668 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| DIF_stipe_center | YFB_veil | 0.006387 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.267670 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.007439 | yes |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.004160 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.140560 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.366140 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.326941 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.111957 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.002084 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.212706 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.002084 | yes |
| DIF_stipe_shell | YFB_veil | 0.117477 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.126752 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.009446 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.059906 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.982155 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.749181 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.765397 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.979682 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.313622 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.893058 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.314158 | no |
| DIF_stipe_skin | YFB_veil | 0.981103 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.566542 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.879004 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.520071 | no |
| DIF_cap_skin | YFB_stipe_center | 0.253577 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.249833 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.596917 | no |
| DIF_cap_skin | YFB_cap_skin | 0.821698 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.385789 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.817971 | no |
| DIF_cap_skin | YFB_veil | 0.591830 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.736707 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.851914 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.544796 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.561958 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.902583 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.468486 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.721555 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.471502 | no |
| DIF_cap_tissue | YFB_veil | 0.900545 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|035830 MVLTEEEEKYIIRKIHDSPQQKWKQLANRRLQIWGGEITAKGLLPQSLPPYALNYPNLLDRLKETGAFLESPHGS PNHIILNEYRAGQGIMPHEDGPKYFPVVATISLGSHTVFNYYRYKPNHPEPGDSEGKIVDKIPMMSLLLEPRSVV ISSGEMYTGYLHGIDPVEEDHLLPSNASQPSEDDPEDSESTITWTTIDNWSLLGDEHTKHLVTSGSILKRGTRYS LTCRDVERVFSAKSFRFTR* |
| Coding | >AgabiH97|035830 ATGGTTCTCACCGAGGAAGAGGAAAAGTATATCATACGCAAAATACACGACTCTCCTCAACAAAAATGGAAGCAA CTGGCAAATCGAAGGCTGCAAATATGGGGTGGGGAAATCACTGCGAAGGGGCTTCTTCCTCAAAGTCTTCCGCCG TACGCGTTGAATTACCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCATGGAAGC CCTAATCATATCATTCTCAACGAGTATCGGGCTGGGCAGGGAATAATGCCTCATGAAGATGGTCCGAAGTACTTT CCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTATTTAATTACTACCGATACAAACCGAACCATCCAGAG CCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTATGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTC ATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGTATAGACCCTGTCGAGGAGGACCACCTCCTTCCATCA AACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCGACAACTGG TCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTAGATATAGT TTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG |
| Transcript | >AgabiH97|035830 ATGGTTCTCACCGAGGAAGAGGAAAAGTATATCATACGCAAAATACACGACTCTCCTCAACAAAAATGGAAGCAA CTGGCAAATCGAAGGCTGCAAATATGGGGTGGGGAAATCACTGCGAAGGGGCTTCTTCCTCAAAGTCTTCCGCCG TACGCGTTGAATTACCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCATGGAAGC CCTAATCATATCATTCTCAACGAGTATCGGGCTGGGCAGGGAATAATGCCTCATGAAGATGGTCCGAAGTACTTT CCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTATTTAATTACTACCGATACAAACCGAACCATCCAGAG CCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTATGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTC ATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGTATAGACCCTGTCGAGGAGGACCACCTCCTTCCATCA AACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCGACAACTGG TCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTAGATATAGT TTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG |
| Gene | >AgabiH97|035830 ATGGTTCTCACCGTGTGGGCGATCGTGATGTGATCTACATTCCCAACTTCCTTTCGGTCGGTAAACTTAGAGTCT TCCTTCGTCTTGGATGAATTGATTTCTATTGATTGTAGGAGGAAGAGGAAAAGTATATCATACGCAAAGCCAGTG TCTTATTATCATGGTTTTCTTATTTGATTCCAATCTCTCTTTTTAGATACACGACTCTCCTCAACAAAAATGGAA GCAACTGGCAAATCGAAGGTAACGCTCTGAAGCTCCGCGACGGAGACAATCTCCTTAAACCCTATTAGGCTGCAA ATATGGGGTTTGAATCAGAGACCTTCTGGTGTCGTGATACTTATCTAACCCGGCCAGGTGGGGAAATCACTGCGA AGGGGCTTCTTCCTCAAAGTCTTCCGCCGTACGCGTTGAATTAGTGAGGATATATTCAACCCTCGCTTCCGCGTT CTACTCTTGACTAGTTCCAGCCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCAT GGAAGCCCTAATCATATCATTCTCAACGAGGTCTGAATCATATGCGGCTCTGTCACTCAAAGCTGATTCAATCGT GTAGTATCGGGCTGGGCAGGGAATAATGGTTAGCGTCTAAGTTTCGCCTTCCAAATGGTGGCTCCTTGAATTTGT TTCCACAGCCTCATGAAGATGGTCCGAAGTACTTTCCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTAT TTAATTACTACCGATACAAACCGAACCATCCAGAGCCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTA TGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTCATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGGT GAGTAGGGTCTTATAATTGTATACTGAAACATTTATTGTAAGACAGTATAGACCCTGTCGAGGAGGACCACCTCC TTCCATCAAACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCG ACAACTGGTCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTA GATATAGTTTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG |