Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|035830
Gene name
Location	scaffold_13:587233..588426
Strand	-
Gene length (bp)	1193
Transcript length (bp)	735
Coding sequence length (bp)	735
Protein length (aa)	245

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	1.8E-13	42	229

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5PQ59\|ALKB6_XENLA	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1	3	235	7.0E-45
sp\|Q8K2U2\|ALKB6_MOUSE	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=3	3	237	1.0E-42
sp\|Q3KRA9\|ALKB6_HUMAN	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Homo sapiens GN=ALKBH6 PE=1 SV=2	3	237	8.0E-42
sp\|Q6IQE9\|ALKB6_DANRE	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio rerio GN=alkbh6 PE=2 SV=1	3	240	1.0E-39
sp\|Q5UR03\|YL905_MIMIV	Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=3 SV=1	3	172	1.0E-10

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 31	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|035830 MVLTEEEEKYIIRKIHDSPQQKWKQLANRRLQIWGGEITAKGLLPQSLPPYALNYPNLLDRLKETGAFLESPHGS PNHIILNEYRAGQGIMPHEDGPKYFPVVATISLGSHTVFNYYRYKPNHPEPGDSEGKIVDKIPMMSLLLEPRSVV ISSGEMYTGYLHGIDPVEEDHLLPSNASQPSEDDPEDSESTITWTTIDNWSLLGDEHTKHLVTSGSILKRGTRYS LTCRDVERVFSAKSFRFTR*
Coding	>AgabiH97\|035830 ATGGTTCTCACCGAGGAAGAGGAAAAGTATATCATACGCAAAATACACGACTCTCCTCAACAAAAATGGAAGCAA CTGGCAAATCGAAGGCTGCAAATATGGGGTGGGGAAATCACTGCGAAGGGGCTTCTTCCTCAAAGTCTTCCGCCG TACGCGTTGAATTACCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCATGGAAGC CCTAATCATATCATTCTCAACGAGTATCGGGCTGGGCAGGGAATAATGCCTCATGAAGATGGTCCGAAGTACTTT CCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTATTTAATTACTACCGATACAAACCGAACCATCCAGAG CCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTATGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTC ATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGTATAGACCCTGTCGAGGAGGACCACCTCCTTCCATCA AACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCGACAACTGG TCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTAGATATAGT TTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG
Transcript	>AgabiH97\|035830 ATGGTTCTCACCGAGGAAGAGGAAAAGTATATCATACGCAAAATACACGACTCTCCTCAACAAAAATGGAAGCAA CTGGCAAATCGAAGGCTGCAAATATGGGGTGGGGAAATCACTGCGAAGGGGCTTCTTCCTCAAAGTCTTCCGCCG TACGCGTTGAATTACCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCATGGAAGC CCTAATCATATCATTCTCAACGAGTATCGGGCTGGGCAGGGAATAATGCCTCATGAAGATGGTCCGAAGTACTTT CCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTATTTAATTACTACCGATACAAACCGAACCATCCAGAG CCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTATGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTC ATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGTATAGACCCTGTCGAGGAGGACCACCTCCTTCCATCA AACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCGACAACTGG TCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTAGATATAGT TTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG
Gene	>AgabiH97\|035830 ATGGTTCTCACCGTGTGGGCGATCGTGATGTGATCTACATTCCCAACTTCCTTTCGGTCGGTAAACTTAGAGTCT TCCTTCGTCTTGGATGAATTGATTTCTATTGATTGTAGGAGGAAGAGGAAAAGTATATCATACGCAAAGCCAGTG TCTTATTATCATGGTTTTCTTATTTGATTCCAATCTCTCTTTTTAGATACACGACTCTCCTCAACAAAAATGGAA GCAACTGGCAAATCGAAGGTAACGCTCTGAAGCTCCGCGACGGAGACAATCTCCTTAAACCCTATTAGGCTGCAA ATATGGGGTTTGAATCAGAGACCTTCTGGTGTCGTGATACTTATCTAACCCGGCCAGGTGGGGAAATCACTGCGA AGGGGCTTCTTCCTCAAAGTCTTCCGCCGTACGCGTTGAATTAGTGAGGATATATTCAACCCTCGCTTCCGCGTT CTACTCTTGACTAGTTCCAGCCCAAACCTTCTCGACCGTCTCAAGGAAACTGGGGCCTTTCTTGAGTCGCCTCAT GGAAGCCCTAATCATATCATTCTCAACGAGGTCTGAATCATATGCGGCTCTGTCACTCAAAGCTGATTCAATCGT GTAGTATCGGGCTGGGCAGGGAATAATGGTTAGCGTCTAAGTTTCGCCTTCCAAATGGTGGCTCCTTGAATTTGT TTCCACAGCCTCATGAAGATGGTCCGAAGTACTTTCCTGTAGTAGCTACCATCTCGCTGGGATCTCACACGGTAT TTAATTACTACCGATACAAACCGAACCATCCAGAGCCAGGGGACAGCGAAGGAAAGATTGTTGACAAGATCCCTA TGATGTCCCTTCTTCTCGAGCCTCGCAGTGTAGTCATATCTTCGGGTGAGATGTACACAGGTTACCTGCACGGGT GAGTAGGGTCTTATAATTGTATACTGAAACATTTATTGTAAGACAGTATAGACCCTGTCGAGGAGGACCACCTCC TTCCATCAAACGCTTCACAACCCAGCGAAGATGATCCTGAAGATTCCGAGTCAACAATTACTTGGACTACGATCG ACAACTGGTCCCTCCTTGGAGACGAGCATACGAAACACTTAGTCACGAGTGGTAGTATCCTCAAGCGGGGGACTA GATATAGTTTGACCTGTCGAGACGTGGAGCGCGTTTTCTCCGCCAAATCTTTCAGATTCACTCGATAG

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