© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|034970 |
| Gene name | |
| Location | scaffold_13:359176..360451 |
| Strand | - |
| Gene length (bp) | 1275 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 1.7E-28 | 40 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 17 | 237 | 7.0E-31 |
| sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 33 | 237 | 8.0E-29 |
| sp|O34798|PDAC_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 | 44 | 234 | 1.0E-24 |
| sp|Q8DP63|PGDA_STRR6 | Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 | 44 | 236 | 1.0E-24 |
| sp|P54865|XYND_CELFI | Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 | 38 | 223 | 1.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 17 | 237 | 7.0E-31 |
| sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 33 | 237 | 8.0E-29 |
| sp|O34798|PDAC_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 | 44 | 234 | 1.0E-24 |
| sp|Q8DP63|PGDA_STRR6 | Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 | 44 | 236 | 1.0E-24 |
| sp|P54865|XYND_CELFI | Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 | 38 | 223 | 1.0E-22 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 37 | 240 | 1.0E-22 |
| sp|P50325|CDA_AMYRO | Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 | 37 | 240 | 6.0E-18 |
| sp|P0CP76|CDA_CRYNJ | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 | 39 | 244 | 6.0E-16 |
| sp|P0CP77|CDA_CRYNB | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 | 39 | 244 | 8.0E-16 |
| sp|O34928|PDAA_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 | 22 | 238 | 1.0E-15 |
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 48 | 240 | 2.0E-15 |
| sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 37 | 242 | 2.0E-15 |
| sp|P82476|CDA_CRYNH | Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 | 39 | 244 | 2.0E-14 |
| sp|P50865|PDAB_BACSU | Probable polysaccharide deacetylase PdaB OS=Bacillus subtilis (strain 168) GN=pdaB PE=3 SV=2 | 36 | 235 | 6.0E-14 |
| sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 7 | 235 | 3.0E-13 |
| sp|Q52845|NODB_RHILO | Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 | 48 | 233 | 9.0E-13 |
| sp|P50352|NODB_BRAEL | Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 | 48 | 233 | 1.0E-12 |
| sp|P50355|NODB_RHISN | Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 | 33 | 233 | 2.0E-12 |
| sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 41 | 231 | 3.0E-12 |
| sp|P50354|NODB_RHIGA | Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 | 43 | 174 | 6.0E-12 |
| sp|Q59674|XY11A_CELJA | Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 | 47 | 174 | 7.0E-12 |
| sp|P04675|NODB_BRASP | Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 | 48 | 233 | 3.0E-11 |
| sp|P50850|YLXY_BACSU | Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 | 64 | 237 | 1.0E-10 |
| sp|O07596|YHEN_BACSU | Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 | 43 | 235 | 2.0E-09 |
| sp|Q07740|NODB_AZOC5 | Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 | 31 | 231 | 9.0E-09 |
| sp|P04339|NODB_RHILV | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 | 48 | 174 | 8.0E-08 |
| sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 41 | 233 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0772 | 0.0375 | 0.9601 | 0.0751 | 0.0358 | 0.0235 | 0.1899 | 0.1888 | 0.2247 | 0.0029 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 24 | 0.999775 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| CE4 | 4.2E-30 | 40 | 163 |
| Orthofinder run ID | 1 |
| Orthogroup | 337 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|034970 MIFNLHSIAVFIAATASLTSGVNAAPQAANTTLARVVRSCTKDKVAALTFDDGPTDYTIIAEYLLTKAGAKGTFF VNGALWGCIYDQRRADTVKILYDRGHQIGSHTWSHPDLTLLSRDEIVPEMTRSHVAIERITGASPAFMRPPYGEY NSLVQEVAASLGETIALWDLDPEDTTDKDVAYQRKQYDDAVNRKVKNVLSLQHDIKSQTVYLVLPYVIKKLQDAG YKLVTLAECLGEQPYSKIGSPQQRTADWHC* |
| Coding | >AgabiH97|034970 ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT GATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTTT GTCAATGGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGA CATCAAATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAATTGTTCCAGAAATG ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGGAGTAT AACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATTTGGATCCTGAAGACACA ACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGAATGTGTTGTCG TTACAGCATGATATCAAATCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG GCGGATTGGCATTGCTGA |
| Transcript | >AgabiH97|034970 ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT GATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTTT GTCAATGGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGA CATCAAATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAATTGTTCCAGAAATG ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGGAGTAT AACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATTTGGATCCTGAAGACACA ACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGAATGTGTTGTCG TTACAGCATGATATCAAATCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG GCGGATTGGCATTGCTGA |
| Gene | >AgabiH97|034970 ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT GTGCGTATCAAATCGCTCCTTTGAAGCATACTTGTTGACCTCATATCTTGTGACGTGTGTCTTTTTCCGACTATA GGATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTT TGTCAGTAAGTTGTCATTGTTATTTTCTTCTTCTACTGAACATCGAAGAACGCGTCTGATTTTTTTCTTATAGAT GGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGACATCAA ATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAAGTATATTCTTCCGCTTCGTC TAAGTCCGGCTTTGTTGCTGACATAGGAATATCTAGTTGTTCCAGAAATGACTAGGAGTCATGGTAAGTGCCTCT GATTGAACGTCAATTTTCTCCAAATCGAATTATGCGTGTGGGGATTGTAGTGGCTATTGAGAGGATCACTGGTGC CAGTCCAGCATTTATGCGTCCGCGTGAGTGTCGAATGGTGTTCAACCAAACTCATTTCGCTGACAAATAAATCTT CAGCTTACGGGGAGTATAACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATT TGGAGTAAGTTTTCAAATTCCTATTCGCCAAGTGCCAATTGTCGCGTATTGATCTGACTTTGGTTGATATTAGTC CTGAAGACACAACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGA ATGTGTTGTCGTTACAGCATGATATCAAATGTGCGCCTTGCATAGTTATGTATCTCGATGCTTGCTAACTCTGGA CCATTTTCTTTTTCAATAGCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG GTAAGCTTATTTACTCTTCCAGAATCGTCTTTGTATCATTGACGGTTTGGAATACAGGCGGATTGGCATTGCTGA |