Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|034970
Gene name
Locationscaffold_13:359176..360451
Strand-
Gene length (bp)1275
Transcript length (bp)768
Coding sequence length (bp)768
Protein length (aa) 256

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 1.7E-28 40 162

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 237 7.0E-31
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 33 237 8.0E-29
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 44 234 1.0E-24
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 44 236 1.0E-24
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 38 223 1.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 237 7.0E-31
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 33 237 8.0E-29
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 44 234 1.0E-24
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 44 236 1.0E-24
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 38 223 1.0E-22
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 37 240 1.0E-22
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 37 240 6.0E-18
sp|P0CP76|CDA_CRYNJ Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 39 244 6.0E-16
sp|P0CP77|CDA_CRYNB Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 39 244 8.0E-16
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 22 238 1.0E-15
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 48 240 2.0E-15
sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 37 242 2.0E-15
sp|P82476|CDA_CRYNH Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 39 244 2.0E-14
sp|P50865|PDAB_BACSU Probable polysaccharide deacetylase PdaB OS=Bacillus subtilis (strain 168) GN=pdaB PE=3 SV=2 36 235 6.0E-14
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 7 235 3.0E-13
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 48 233 9.0E-13
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 48 233 1.0E-12
sp|P50355|NODB_RHISN Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 33 233 2.0E-12
sp|P02963|NODB_RHIME Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 41 231 3.0E-12
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 43 174 6.0E-12
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 47 174 7.0E-12
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 48 233 3.0E-11
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 64 237 1.0E-10
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 43 235 2.0E-09
sp|Q07740|NODB_AZOC5 Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 31 231 9.0E-09
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 48 174 8.0E-08
sp|P04676|NODB_RHILT Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 41 233 5.0E-07
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GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0003824 catalytic activity No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|034970
MIFNLHSIAVFIAATASLTSGVNAAPQAANTTLARVVRSCTKDKVAALTFDDGPTDYTIIAEYLLTKAGAKGTFF
VNGALWGCIYDQRRADTVKILYDRGHQIGSHTWSHPDLTLLSRDEIVPEMTRSHVAIERITGASPAFMRPPYGEY
NSLVQEVAASLGETIALWDLDPEDTTDKDVAYQRKQYDDAVNRKVKNVLSLQHDIKSQTVYLVLPYVIKKLQDAG
YKLVTLAECLGEQPYSKIGSPQQRTADWHC*
Coding >AgabiH97|034970
ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT
CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT
GATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTTT
GTCAATGGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGA
CATCAAATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAATTGTTCCAGAAATG
ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGGAGTAT
AACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATTTGGATCCTGAAGACACA
ACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGAATGTGTTGTCG
TTACAGCATGATATCAAATCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA
TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG
GCGGATTGGCATTGCTGA
Transcript >AgabiH97|034970
ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT
CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT
GATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTTT
GTCAATGGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGA
CATCAAATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAATTGTTCCAGAAATG
ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGGAGTAT
AACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATTTGGATCCTGAAGACACA
ACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGAATGTGTTGTCG
TTACAGCATGATATCAAATCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA
TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG
GCGGATTGGCATTGCTGA
Gene >AgabiH97|034970
ATGATTTTTAACCTCCACTCTATCGCCGTATTCATCGCCGCTACCGCTAGTTTGACGTCTGGTGTGAATGCAGCT
CCTCAAGCAGCTAATACTACACTCGCTAGAGTCGTCAGAAGTTGTACAAAGGACAAAGTCGCAGCATTAACTTTT
GTGCGTATCAAATCGCTCCTTTGAAGCATACTTGTTGACCTCATATCTTGTGACGTGTGTCTTTTTCCGACTATA
GGATGATGGACCCACTGATTACACGATCATTGCTGAGTATCTTTTGACTAAAGCAGGTGCAAAAGGCACATTTTT
TGTCAGTAAGTTGTCATTGTTATTTTCTTCTTCTACTGAACATCGAAGAACGCGTCTGATTTTTTTCTTATAGAT
GGAGCTCTTTGGGGATGTATCTATGATCAAAGACGCGCCGATACTGTAAAAATCTTGTATGACCGCGGACATCAA
ATTGGCTCGCATACTTGGTCGCACCCGGATCTCACTTTATTGTCTCGAGACGAAAGTATATTCTTCCGCTTCGTC
TAAGTCCGGCTTTGTTGCTGACATAGGAATATCTAGTTGTTCCAGAAATGACTAGGAGTCATGGTAAGTGCCTCT
GATTGAACGTCAATTTTCTCCAAATCGAATTATGCGTGTGGGGATTGTAGTGGCTATTGAGAGGATCACTGGTGC
CAGTCCAGCATTTATGCGTCCGCGTGAGTGTCGAATGGTGTTCAACCAAACTCATTTCGCTGACAAATAAATCTT
CAGCTTACGGGGAGTATAACAGTCTAGTGCAAGAGGTTGCAGCATCTCTAGGGGAAACTATCGCTCTGTGGGATT
TGGAGTAAGTTTTCAAATTCCTATTCGCCAAGTGCCAATTGTCGCGTATTGATCTGACTTTGGTTGATATTAGTC
CTGAAGACACAACCGATAAAGACGTAGCTTACCAGAGGAAACAATATGATGATGCAGTCAATAGGAAAGTGAAGA
ATGTGTTGTCGTTACAGCATGATATCAAATGTGCGCCTTGCATAGTTATGTATCTCGATGCTTGCTAACTCTGGA
CCATTTTCTTTTTCAATAGCCCAAACTGTCTATCTCGTATTACCATATGTGATTAAGAAACTACAAGACGCCGGA
TACAAACTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGATCTCCTCAACAGAGGACG
GTAAGCTTATTTACTCTTCCAGAATCGTCTTTGTATCATTGACGGTTTGGAATACAGGCGGATTGGCATTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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