Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|034950
Gene name
Locationscaffold_13:356033..357307
Strand-
Gene length (bp)1274
Transcript length (bp)768
Coding sequence length (bp)768
Protein length (aa) 256

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 1.7E-31 40 164

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 33 237 3.0E-37
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 237 7.0E-35
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 1 235 1.0E-24
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 37 240 6.0E-23
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 38 223 5.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 33 237 3.0E-37
sp|D4AM78|CDA_ARTBC Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 17 237 7.0E-35
sp|Q8DP63|PGDA_STRR6 Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 1 235 1.0E-24
sp|Q06702|CDA1_YEAST Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 37 240 6.0E-23
sp|P54865|XYND_CELFI Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 38 223 5.0E-22
sp|O34798|PDAC_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 44 234 3.0E-20
sp|P50325|CDA_AMYRO Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 37 240 3.0E-18
sp|Q06703|CDA2_YEAST Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 37 242 1.0E-17
sp|O34928|PDAA_BACSU Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 22 238 6.0E-16
sp|P0CP76|CDA_CRYNJ Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 39 244 3.0E-15
sp|P0CP77|CDA_CRYNB Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 39 244 3.0E-15
sp|Q04729|YFUM2_GEOSE Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 44 240 8.0E-15
sp|P82476|CDA_CRYNH Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 39 212 1.0E-14
sp|P83513|XY11A_PSEXY Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 7 235 2.0E-14
sp|Q59674|XY11A_CELJA Bifunctional xylanase/xylan deacetylase OS=Cellvibrio japonicus GN=xyn11A PE=1 SV=1 47 174 3.0E-13
sp|P50850|YLXY_BACSU Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 56 174 3.0E-13
sp|P50865|PDAB_BACSU Probable polysaccharide deacetylase PdaB OS=Bacillus subtilis (strain 168) GN=pdaB PE=3 SV=2 36 235 1.0E-12
sp|O07596|YHEN_BACSU Putative polysaccharide deacetylase YheN OS=Bacillus subtilis (strain 168) GN=yheN PE=3 SV=1 43 235 2.0E-12
sp|P50355|NODB_RHISN Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 33 174 7.0E-12
sp|P50354|NODB_RHIGA Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 43 174 1.0E-11
sp|P04675|NODB_BRASP Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 48 233 6.0E-11
sp|P50352|NODB_BRAEL Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 48 233 6.0E-11
sp|P02963|NODB_RHIME Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 41 174 7.0E-11
sp|Q52845|NODB_RHILO Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 48 233 1.0E-10
sp|Q07740|NODB_AZOC5 Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 48 231 6.0E-09
sp|P04339|NODB_RHILV Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 48 174 3.0E-08
sp|P24150|NODB_RHILP Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 48 174 6.0E-08
sp|P04676|NODB_RHILT Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 43 180 1.0E-06
sp|P94361|YXKH_BACSU Putative polysaccharide deacetylase YxkH OS=Bacillus subtilis (strain 168) GN=yxkH PE=3 SV=1 43 162 5.0E-06
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GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0003824 catalytic activity No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|034950
MIFNLHSIAVFIAATASLTSGVNAAPQAANAALARVVRSCTRDKVAALTFDDGPFDYTDDAIDILDDAEAKGTFF
VNGNNWGCIYDQERVDTMKNAYNRGHQIGSHTWSHANLTSLSRNQIVSEMTRSHVAIERITGASPAFMRPPYGNY
NSLVQEVAASLGETVAMWDLDSGDTTNKDVVYQMEQYDDAVNRKAKNVLSLQHDIKSESIYIVLPYAIQKLQAAG
YRLVTLAECLGEQPYSKIGSPQQRTADWHC*
Coding >AgabiH97|034950
ATGATTTTCAACCTCCACTCTATCGCCGTATTCATCGCCGCCACCGCTAGTTTGACGTCTGGTGTGAATGCCGCT
CCTCAAGCAGCTAATGCTGCACTCGCTAGAGTCGTCAGAAGTTGTACAAGGGACAAAGTCGCGGCATTGACTTTT
GATGATGGACCCTTTGATTACACGGACGATGCTATTGATATTTTGGACGATGCAGAAGCAAAGGGAACGTTTTTC
GTCAATGGAAATAATTGGGGATGTATCTATGATCAAGAACGCGTCGATACTATGAAAAACGCGTATAACAGAGGA
CATCAAATTGGCTCGCATACTTGGTCGCACGCGAATCTCACTTCATTGTCTCGAAATCAAATTGTTTCAGAAATG
ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGAATTAC
AATAGTCTAGTGCAAGAGGTTGCAGCATCTCTGGGGGAAACTGTCGCTATGTGGGATTTGGATTCTGGAGATACC
ACTAATAAGGATGTAGTTTACCAGATGGAACAATATGATGATGCAGTCAATAGGAAAGCGAAGAATGTGTTGTCG
TTGCAACATGATATCAAATCCGAATCCATCTATATCGTGTTACCGTATGCGATTCAGAAACTGCAAGCCGCCGGA
TACAGGCTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGGTCTCCTCAACAGAGGACG
GCGGATTGGCATTGCTGA
Transcript >AgabiH97|034950
ATGATTTTCAACCTCCACTCTATCGCCGTATTCATCGCCGCCACCGCTAGTTTGACGTCTGGTGTGAATGCCGCT
CCTCAAGCAGCTAATGCTGCACTCGCTAGAGTCGTCAGAAGTTGTACAAGGGACAAAGTCGCGGCATTGACTTTT
GATGATGGACCCTTTGATTACACGGACGATGCTATTGATATTTTGGACGATGCAGAAGCAAAGGGAACGTTTTTC
GTCAATGGAAATAATTGGGGATGTATCTATGATCAAGAACGCGTCGATACTATGAAAAACGCGTATAACAGAGGA
CATCAAATTGGCTCGCATACTTGGTCGCACGCGAATCTCACTTCATTGTCTCGAAATCAAATTGTTTCAGAAATG
ACTAGGAGTCATGTGGCTATTGAGAGGATCACTGGTGCCAGTCCAGCATTTATGCGTCCGCCTTACGGGAATTAC
AATAGTCTAGTGCAAGAGGTTGCAGCATCTCTGGGGGAAACTGTCGCTATGTGGGATTTGGATTCTGGAGATACC
ACTAATAAGGATGTAGTTTACCAGATGGAACAATATGATGATGCAGTCAATAGGAAAGCGAAGAATGTGTTGTCG
TTGCAACATGATATCAAATCCGAATCCATCTATATCGTGTTACCGTATGCGATTCAGAAACTGCAAGCCGCCGGA
TACAGGCTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGGTCTCCTCAACAGAGGACG
GCGGATTGGCATTGCTGA
Gene >AgabiH97|034950
ATGATTTTCAACCTCCACTCTATCGCCGTATTCATCGCCGCCACCGCTAGTTTGACGTCTGGTGTGAATGCCGCT
CCTCAAGCAGCTAATGCTGCACTCGCTAGAGTCGTCAGAAGTTGTACAAGGGACAAAGTCGCGGCATTGACTTTT
GTGCGTATCAAATGCTCCTTTGAAGCATACTTGTTGACCTCGTAACTTGTGACGCGTGTCTTTTCTCCAACTGTA
GGATGATGGACCCTTTGATTACACGGACGATGCTATTGATATTTTGGACGATGCAGAAGCAAAGGGAACGTTTTT
CGTCAGTAAGTTACCATTGCTGTTTTTCTTCTAGTGAATATCGAAGAACGCGTCTGATTTCTTTCTTATAGATGG
AAATAATTGGGGATGTATCTATGATCAAGAACGCGTCGATACTATGAAAAACGCGTATAACAGAGGACATCAAAT
TGGCTCGCATACTTGGTCGCACGCGAATCTCACTTCATTGTCTCGAAATCAAAGTATATTCTTCCGCTTCGTCTA
AGTCCGGTTTTGTTGCTGACATAGGAATATCTAGTTGTTTCAGAAATGACTAGGAGTCATGGTAAGTGCCTCTGA
TTGAACATCAAATTTCTCACCGATTTATGTGTATGGGGATTGTAGTGGCTATTGAGAGGATCACTGGTGCCAGTC
CAGCATTTATGCGTCCGCGTGAGTGTCGAATGATGTTCAACCAAACTCATCTCGCTGACAAAACAAATGTTCAGC
TTACGGGAATTACAATAGTCTAGTGCAAGAGGTTGCAGCATCTCTGGGGGAAACTGTCGCTATGTGGGATTTGGA
GTAAGTTTTCAAATTCCTATTCGCCAAGTGCCAATTGTCGCGTATTGATCTGACTTTGGTTGATATTAGTTCTGG
AGATACCACTAATAAGGATGTAGTTTACCAGATGGAACAATATGATGATGCAGTCAATAGGAAAGCGAAGAATGT
GTTGTCGTTGCAACATGATATCAAATGTGCGCCTTGCATAGTTATTTATCTCGATACTTGCTAACTCTGTGAACC
ATTTCTCTTTTTCAATAGCCGAATCCATCTATATCGTGTTACCGTATGCGATTCAGAAACTGCAAGCCGCCGGAT
ACAGGCTCGTGACACTGGCGGAATGCCTTGGTGAACAACCGTATTCCAAAATAGGGTCTCCTCAACAGAGGACGG
TAAGCTTACTTACTCTTTCAGAATCGTCTTTGTATCATTGACGGTTTGGAATACAGGCGGATTGGCATTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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