© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|034720 |
| Gene name | |
| Location | scaffold_13:307989..309785 |
| Strand | + |
| Gene length (bp) | 1796 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00010 | HLH | Helix-loop-helix DNA-binding domain | 8.5E-12 | 257 | 307 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5A1E3|CBF1_CANAL | Transcriptional regulator CBF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBF1 PE=1 SV=1 | 246 | 343 | 8.0E-27 |
| sp|P17106|CBF1_YEAST | Centromere-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBF1 PE=1 SV=2 | 240 | 360 | 5.0E-20 |
| sp|Q10186|YAWC_SCHPO | Uncharacterized bHLH domain-containing protein C3F10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.12c PE=3 SV=1 | 231 | 342 | 1.0E-18 |
| sp|P49379|CBF1_KLULA | Centromere-binding protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBF1 PE=3 SV=2 | 249 | 331 | 3.0E-18 |
| sp|Q64092|TFE3_MOUSE | Transcription factor E3 OS=Mus musculus GN=Tfe3 PE=1 SV=2 | 255 | 339 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5A1E3|CBF1_CANAL | Transcriptional regulator CBF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBF1 PE=1 SV=1 | 246 | 343 | 8.0E-27 |
| sp|P17106|CBF1_YEAST | Centromere-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBF1 PE=1 SV=2 | 240 | 360 | 5.0E-20 |
| sp|Q10186|YAWC_SCHPO | Uncharacterized bHLH domain-containing protein C3F10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.12c PE=3 SV=1 | 231 | 342 | 1.0E-18 |
| sp|P49379|CBF1_KLULA | Centromere-binding protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBF1 PE=3 SV=2 | 249 | 331 | 3.0E-18 |
| sp|Q64092|TFE3_MOUSE | Transcription factor E3 OS=Mus musculus GN=Tfe3 PE=1 SV=2 | 255 | 339 | 2.0E-10 |
| sp|Q05B92|TFE3_BOVIN | Transcription factor E3 OS=Bos taurus GN=TFE3 PE=2 SV=1 | 255 | 339 | 7.0E-10 |
| sp|P19532|TFE3_HUMAN | Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4 | 255 | 339 | 1.0E-09 |
| sp|Q15853|USF2_HUMAN | Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=1 SV=1 | 256 | 339 | 5.0E-09 |
| sp|Q08874|MITF_MOUSE | Microphthalmia-associated transcription factor OS=Mus musculus GN=Mitf PE=1 SV=3 | 255 | 312 | 5.0E-09 |
| sp|O75030|MITF_HUMAN | Microphthalmia-associated transcription factor OS=Homo sapiens GN=MITF PE=1 SV=2 | 255 | 312 | 7.0E-09 |
| sp|Q9R210|TFEB_MOUSE | Transcription factor EB OS=Mus musculus GN=Tfeb PE=1 SV=2 | 255 | 315 | 8.0E-09 |
| sp|Q64705|USF2_MOUSE | Upstream stimulatory factor 2 OS=Mus musculus GN=Usf2 PE=1 SV=1 | 256 | 360 | 1.0E-08 |
| sp|P19484|TFEB_HUMAN | Transcription factor EB OS=Homo sapiens GN=TFEB PE=1 SV=3 | 255 | 315 | 1.0E-08 |
| sp|Q63665|USF2_RAT | Upstream stimulatory factor 2 OS=Rattus norvegicus GN=Usf2 PE=1 SV=2 | 256 | 360 | 1.0E-08 |
| sp|O88368|MITF_RAT | Microphthalmia-associated transcription factor (Fragment) OS=Rattus norvegicus GN=Mitf PE=2 SV=1 | 255 | 312 | 2.0E-08 |
| sp|Q07957|USF1_XENBO | Upstream stimulatory factor 1 OS=Xenopus borealis GN=usf1 PE=2 SV=1 | 256 | 339 | 5.0E-08 |
| sp|P34474|HLH11_CAEEL | Helix-loop-helix protein 11 OS=Caenorhabditis elegans GN=hlh-11 PE=3 SV=3 | 247 | 360 | 5.0E-08 |
| sp|O02818|USF1_RABIT | Upstream stimulatory factor 1 OS=Oryctolagus cuniculus GN=USF1 PE=2 SV=1 | 256 | 339 | 2.0E-07 |
| sp|Q6XBT4|USF1_BOVIN | Upstream stimulatory factor 1 OS=Bos taurus GN=USF1 PE=2 SV=1 | 256 | 339 | 2.0E-07 |
| sp|P22415|USF1_HUMAN | Upstream stimulatory factor 1 OS=Homo sapiens GN=USF1 PE=1 SV=1 | 256 | 339 | 2.0E-07 |
| sp|Q61069|USF1_MOUSE | Upstream stimulatory factor 1 OS=Mus musculus GN=Usf1 PE=1 SV=1 | 256 | 339 | 2.0E-07 |
| sp|Q07956|USF_STRPU | Upstream stimulatory factor OS=Strongylocentrotus purpuratus PE=2 SV=1 | 256 | 312 | 2.0E-06 |
| sp|Q0VH32|MNT_XENLA | Max-binding protein MNT OS=Xenopus laevis GN=mnt PE=2 SV=1 | 236 | 365 | 3.0E-06 |
| sp|Q68DE3|K2018_HUMAN | Basic helix-loop-helix domain-containing protein KIAA2018 OS=Homo sapiens GN=KIAA2018 PE=1 SV=3 | 255 | 398 | 8.0E-06 |
| sp|Q01664|TFAP4_HUMAN | Transcription factor AP-4 OS=Homo sapiens GN=TFAP4 PE=1 SV=2 | 234 | 359 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005515 | protein binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Helix-loop-helix |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|034720 MTWQVTGFLITAVVTCTPPYPTLPSSLSTVYRTNTVHFVSAAWRPFQPCRQTLFASQDPGLAQPPSNPPQVQASQ PQAGVPPTIPPASDMSNVHLTGGFDQNQIMSLLRHLPNVFGKLTEQGPKEDAAQALSNLAAHPGFSPAAVQAVHY PTSTGLPGINDPGPSSHPRGPPNLGQLSAVALQATPATVQQSRPEGSPTDERTAQQLQQQVAQAVQAATGGSPGD KPPSPTSPGGGSSSGSRRRNPAMGSDEWTRQRKDNHKEVERRRRGNINEGINELGRIVPSGNGEKAKGAILARSV QYIHHLKENEARNIEKWTLEKLLMDQAMGDLQNQLEEVKRMWEEERNARQRLEMEVESLRNSAANGVASALPPPA ASGTNVKSSDSGAIDPATGNKRKSEEVGEQTNGTATANGDGDRDGKRQRTD* |
| Coding | >AgabiH97|034720 ATGACCTGGCAGGTCACAGGGTTTCTGATCACGGCCGTCGTGACTTGCACGCCCCCATATCCCACCCTCCCCTCC TCGCTGAGCACCGTCTATCGCACCAATACAGTCCATTTCGTTTCTGCAGCTTGGCGCCCCTTTCAGCCTTGTCGC CAGACCCTTTTTGCTAGCCAAGACCCTGGCCTTGCGCAGCCTCCTTCCAATCCTCCGCAAGTGCAAGCATCACAA CCTCAAGCAGGCGTACCACCTACCATTCCCCCAGCTTCAGATATGTCCAACGTTCACCTCACCGGTGGCTTCGAT CAGAATCAGATTATGTCTCTACTTCGCCATCTACCCAATGTCTTTGGCAAGCTCACAGAACAAGGCCCGAAAGAA GATGCTGCTCAGGCTCTTTCGAACCTGGCTGCGCATCCCGGTTTTTCCCCGGCAGCTGTCCAGGCTGTTCACTAT CCAACCTCGACTGGACTACCGGGCATCAACGACCCTGGACCATCCTCCCACCCCCGCGGCCCTCCCAATTTGGGT CAATTAAGTGCTGTTGCTTTACAAGCAACACCAGCTACTGTACAACAAAGTCGACCGGAGGGTTCACCCACAGAT GAACGCACGGCGCAACAGCTGCAGCAGCAGGTCGCCCAGGCGGTCCAAGCTGCCACCGGCGGTTCTCCGGGAGAC AAGCCTCCCAGCCCTACGTCACCAGGTGGGGGCTCATCCAGTGGCAGTCGCCGAAGGAATCCAGCTATGGGAAGC GACGAATGGACGAGGCAGAGGAAAGATAACCACAAAGAAGTTGAGCGTCGCCGCCGTGGTAACATCAATGAAGGC ATCAATGAACTTGGTCGCATAGTACCGAGCGGGAACGGAGAAAAGGCGAAAGGCGCTATTCTTGCGCGCTCCGTG CAATACATCCACCACCTGAAGGAGAACGAGGCACGGAATATCGAAAAATGGACTTTGGAGAAACTTCTTATGGAC CAAGCCATGGGAGACCTCCAAAACCAACTGGAAGAAGTCAAGCGTATGTGGGAAGAAGAGCGTAATGCCCGACAA CGCTTGGAGATGGAAGTGGAATCTCTTCGGAATAGTGCCGCCAATGGCGTAGCATCCGCTCTTCCCCCGCCTGCT GCTTCGGGAACGAACGTCAAATCGTCCGACTCGGGGGCTATTGACCCTGCCACGGGAAACAAACGAAAAAGCGAG GAGGTTGGCGAACAGACAAATGGCACCGCAACCGCTAATGGCGATGGTGACAGAGATGGCAAGCGGCAGCGAACA GATTGA |
| Transcript | >AgabiH97|034720 ATGACCTGGCAGGTCACAGGGTTTCTGATCACGGCCGTCGTGACTTGCACGCCCCCATATCCCACCCTCCCCTCC TCGCTGAGCACCGTCTATCGCACCAATACAGTCCATTTCGTTTCTGCAGCTTGGCGCCCCTTTCAGCCTTGTCGC CAGACCCTTTTTGCTAGCCAAGACCCTGGCCTTGCGCAGCCTCCTTCCAATCCTCCGCAAGTGCAAGCATCACAA CCTCAAGCAGGCGTACCACCTACCATTCCCCCAGCTTCAGATATGTCCAACGTTCACCTCACCGGTGGCTTCGAT CAGAATCAGATTATGTCTCTACTTCGCCATCTACCCAATGTCTTTGGCAAGCTCACAGAACAAGGCCCGAAAGAA GATGCTGCTCAGGCTCTTTCGAACCTGGCTGCGCATCCCGGTTTTTCCCCGGCAGCTGTCCAGGCTGTTCACTAT CCAACCTCGACTGGACTACCGGGCATCAACGACCCTGGACCATCCTCCCACCCCCGCGGCCCTCCCAATTTGGGT CAATTAAGTGCTGTTGCTTTACAAGCAACACCAGCTACTGTACAACAAAGTCGACCGGAGGGTTCACCCACAGAT GAACGCACGGCGCAACAGCTGCAGCAGCAGGTCGCCCAGGCGGTCCAAGCTGCCACCGGCGGTTCTCCGGGAGAC AAGCCTCCCAGCCCTACGTCACCAGGTGGGGGCTCATCCAGTGGCAGTCGCCGAAGGAATCCAGCTATGGGAAGC GACGAATGGACGAGGCAGAGGAAAGATAACCACAAAGAAGTTGAGCGTCGCCGCCGTGGTAACATCAATGAAGGC ATCAATGAACTTGGTCGCATAGTACCGAGCGGGAACGGAGAAAAGGCGAAAGGCGCTATTCTTGCGCGCTCCGTG CAATACATCCACCACCTGAAGGAGAACGAGGCACGGAATATCGAAAAATGGACTTTGGAGAAACTTCTTATGGAC CAAGCCATGGGAGACCTCCAAAACCAACTGGAAGAAGTCAAGCGTATGTGGGAAGAAGAGCGTAATGCCCGACAA CGCTTGGAGATGGAAGTGGAATCTCTTCGGAATAGTGCCGCCAATGGCGTAGCATCCGCTCTTCCCCCGCCTGCT GCTTCGGGAACGAACGTCAAATCGTCCGACTCGGGGGCTATTGACCCTGCCACGGGAAACAAACGAAAAAGCGAG GAGGTTGGCGAACAGACAAATGGCACCGCAACCGCTAATGGCGATGGTGACAGAGATGGCAAGCGGCAGCGAACA GATTGA |
| Gene | >AgabiH97|034720 ATGACCTGGCAGGTCACAGGGTTTCTGATCACGGCCGTCGTGACTTGCACGCCCCCATATCCCACCCTCCCCTCC TCGCTGAGCACCGTCTATCGCACCAATACAGTCCATTTCGTTTCTGCAGCTTGGCGCCCGTAAGATTTGTATTGG TTTCTGTACTTTACTTCACCGTTCACACTCCCGCCGTTCTTCCTGTCTAGCTTTCAGCCTTGTCGCCAGTGTCAC CTCAATCACCTCTGAACCCACACGCATCGCAGCTCTCGCTGTCTAGCCCTTTCCCCCGTTTCATAGGACCCTTTT TGTCTGTCAAAGCGTCCGTTTATTTTCCCTGCCATCGAGACTCTAATGGCTCCCACAAACCAGGCTAGCCAAGAC CCTGGCCTTGCGCAGCCTCCTTCCAATCCTCCGCAAGTGCAAGCATCACAACCTCAAGCAGGCGTACCACCTACC ATTCCCCCAGCTTCAGATATGTCCAACGTTCACCTCACCGGTGGCTTCGATCAGAATCAGATTATGTCTCTACTT CGCCATCTACCCAATGTCTTTGGCAAGGTGAGCTTCCCGTTTATGTTTACCCGGCCGGTTGCTTCTCCCCCCGCC TCTCTCCTTCTATGTTTATCGTTCTTTATATATCAGTGTGGAATGCTCTTCTGCAATCGCATCAATTACATTAAT TAACTACACGTGACCGTATATCGTTCGCGACGCCGAGCACGAGCGCGTTCGATGCAAGTCACGGGGAGACGTCTT TTTCTGCTATGCTTATCAGCAATCAACTTGACCGTGCTGATTATTCCGTCTTCAGCTCACAGAACAAGGCCCGAA AGAAGATGCTGCTCAGGCTCTTTCGAACCTGGCTGCGCATCCCGGTTTTTCCCCGGCAGCTGTCCAGGCTGTTCA CTATCCAACCTCGACTGGACTACCGGGCATCAACGACCCTGGACCATCCTCCCACCCCCGCGGCCCTCCCAATTT GGGTCAATTAAGTGCTGTTGCTTTACAAGCAACACCAGCTACTGTACAACAAAGTCGACCGGAGGGTTCACCCAC AGATGAACGCACGGCGCAACAGCTGCAGCAGCAGGTCGCCCAGGCGGTCCAAGCTGCCACCGGCGGTTCTCCGGG AGACAAGCCTCCCAGCCCTACGTCACCAGGTGGGGGCTCATCCAGTGGCAGTCGCCGAAGGAATCCAGCTATGGG AAGCGACGAATGGACGAGGCAGAGGAAAGATAACCACGTATGTGTTTCCTGCTCTTACATTGGTCCCTGCCACCT GTCAACTAACGAATCAACAACAGAAAGAAGTTGAGCGTCGCCGCCGTGGTAACATCAATGAAGGCATCAATGAAC TTGGTCGCATAGTACCGAGCGGGAACGGAGAAAAGGCGAAAGGCGCTATTCTTGCGCGCTCCGTGCAATACATCC ACCACCTGAAGGAGAACGAGGCACGGAATATCGAAAAATGGACTTTGGAGAAACTTCTTATGGACCAAGCCATGG GAGACCTCCAAAACCAACTGGAAGAAGTCAAGCGTATGTGGGAAGAAGAGCGTAATGCCCGACAACGCTTGGAGA TGGAAGTGGAATCTCTTCGGAATAGTGCCGCCAATGGCGTAGCATCCGCTCTTCCCCCGCCTGCTGCTTCGGGAA CGAACGTCAAATCGTCCGACTCGGGGGCTATTGACCCTGCCACGGGAAACAAACGAAAAAGCGAGGAGGTTGGCG AACAGACAAATGGCACCGCAACCGCTAATGGCGATGGTGACAGAGATGGCAAGCGGCAGCGAACAGATTGA |