Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|034710
Gene name
Locationscaffold_13:306804..307693
Strand+
Gene length (bp)889
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.3722 0.2244 0.7323 0.1523 0.1209 0.0647 0.2486 0.2133 0.1416 0.017

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020
Agaricus bisporus var bisporus H97 AgabiH97|020210
Agaricus bisporus var bisporus H97 AgabiH97|034710 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|034710
MSSTTSLALHLTLVMREYMFLSQSSPHPEEFERKRRTIVVAKATLAIFETMIADSVLHLRSPLFIFSTLAVTHTN
RSFGKDFSGPGGLLDMYNRNKYLLYRNDCGENLFSAKGLEAAHHMFFAGYTATDPNAACQTYIHRFGYDVYVGIF
ECFCQPNLPERRGGYYISSTNSDYRDCLQSDTYPTGSRRGP*
Coding >AgabiH97|034710
ATGTCCTCCACAACCAGCTTGGCGCTCCACCTCACTCTTGTTATGCGGGAGTACATGTTCTTGTCGCAGTCTTCT
CCTCATCCCGAGGAATTTGAGAGGAAACGAAGAACGATCGTCGTTGCAAAGGCTACCCTGGCGATCTTTGAGACG
ATGATTGCTGACAGCGTCTTGCATTTACGCTCTCCACTGTTTATATTTTCGACTCTCGCTGTCACCCACACCAAT
CGGTCCTTCGGAAAAGACTTTTCCGGGCCTGGCGGCCTTCTGGACATGTACAATCGTAATAAATATTTACTGTAC
AGGAATGATTGTGGGGAGAATTTATTCAGTGCAAAAGGGTTGGAAGCCGCCCACCATATGTTCTTTGCGGGATAT
ACCGCAACGGACCCGAATGCAGCTTGCCAAACGTATATTCATCGATTCGGCTATGATGTATACGTTGGCATCTTT
GAGTGTTTTTGTCAGCCAAATTTGCCAGAGCGTCGCGGTGGATATTACATTTCAAGCACAAATTCAGATTACCGC
GATTGCCTTCAATCTGATACTTATCCGACCGGGTCCAGGCGAGGACCATGA
Transcript >AgabiH97|034710
ATGTCCTCCACAACCAGCTTGGCGCTCCACCTCACTCTTGTTATGCGGGAGTACATGTTCTTGTCGCAGTCTTCT
CCTCATCCCGAGGAATTTGAGAGGAAACGAAGAACGATCGTCGTTGCAAAGGCTACCCTGGCGATCTTTGAGACG
ATGATTGCTGACAGCGTCTTGCATTTACGCTCTCCACTGTTTATATTTTCGACTCTCGCTGTCACCCACACCAAT
CGGTCCTTCGGAAAAGACTTTTCCGGGCCTGGCGGCCTTCTGGACATGTACAATCGTAATAAATATTTACTGTAC
AGGAATGATTGTGGGGAGAATTTATTCAGTGCAAAAGGGTTGGAAGCCGCCCACCATATGTTCTTTGCGGGATAT
ACCGCAACGGACCCGAATGCAGCTTGCCAAACGTATATTCATCGATTCGGCTATGATGTATACGTTGGCATCTTT
GAGTGTTTTTGTCAGCCAAATTTGCCAGAGCGTCGCGGTGGATATTACATTTCAAGCACAAATTCAGATTACCGC
GATTGCCTTCAATCTGATACTTATCCGACCGGGTCCAGGCGAGGACCATGA
Gene >AgabiH97|034710
ATGTCCTCCACAACCAGCTTGGCGCTCCACCTCACTCTTGTTATGCGGGAGTACATGTTCTTGTCGCAGTCTTCT
CCTCATCCCGAGGAATTTGAGAGGAAACGAAGAACGATCGTCGTTGCAAAGGTATGTGCCCTCGTCTATTATGTT
GTTTGCTCGGTTGCCAGTATTGATGTCGGGCCGTATTAGGCTACCCTGGCGATCTTTGAGACGATGATTGCTGAC
AGCGTCTTGGTAAGGCCTTGAAGAAATACACTTGGGGAAATCTGACAGTAGGGCTCGTGACTTAAGCTCTACAGA
TGCTGGCTTATCTGGAATAAGATGTTCCTTGCTATAGTCCTACCCATTTTTCTCTGGATGGGATGTCTGGGTTCT
AGCATTTACGCTCTCCACTGTTTATATTTTCGACTCTCGCTGTCACCCACACCAATCGGTCCTTCGGAAAAGACT
TTTCCGGGCCTGGCGGCCTTCTGGACATGTACAATCGTAATAAATATTTACTGTACAGGTAAGCGGTTTAGTTTT
GAAAATAAAACGTTCAACATCACATATATATATTTCTTTAGGAATGATTGTGGGGAGAATTTATTCAGTGCAAAA
GGGTTGGAAGCCGCCCACCATATGTTCTTTGCGGGATATACCGCAACGGACCCGAATGCAGCTTGCCAAACGTAT
ATTCATCGATTCGGCTATGATGTATACGTTGGCATCTTTGAGTGTTTTTGTCAGCCAAATTTGCCAGAGCGTCGC
GGTGGATATTACATTTCAAGCAGTAGGTCAGCCGAATTTGGGACCGATCAATTTCTTATTATGTTGTATAGCAAA
TTCAGATTACCGCGATTGCCTTCAATCTGATACTTATCCGACCGGGTCCAGGCGAGGACCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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