© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|034530 |
| Gene name | |
| Location | scaffold_13:251097..252565 |
| Strand | + |
| Gene length (bp) | 1468 |
| Transcript length (bp) | 930 |
| Coding sequence length (bp) | 930 |
| Protein length (aa) | 310 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.2126 | 0.1618 | 0.0904 | 0.7544 | 0.06 | 0.0058 | 0.181 | 0.4424 | 0.2772 | 0.0022 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 40 | 62 | 22 |
| 2 | 74 | 96 | 22 |
| 3 | 125 | 147 | 22 |
| 4 | 167 | 189 | 22 |
| 5 | 199 | 216 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 14.25 | 6.63 | 21.87 |
| Initials | Initials knots | 13.14 | 6.20 | 20.08 |
| Pileal_Stipeal_center | Stage I stipe center | 3.68 | 1.31 | 6.04 |
| Pileal_Stipeal_shell | Stage I stipe shell | 2.22 | 0.64 | 3.80 |
| DIF_stipe_center | Stage II stipe center | 6.03 | 2.56 | 9.49 |
| DIF_stipe_shell | Stage II stipe shell | 5.25 | 2.17 | 8.33 |
| DIF_stipe_skin | Stage II stipe skin | 3.83 | 1.44 | 6.23 |
| DIF_cap_skin | Stage II cap skin | 1.01 | 0.18 | 1.83 |
| DIF_cap_tissue | Stage II cap tissue | 1.88 | 0.49 | 3.27 |
| DIF_gill_tissue | Stage II gill tissue | 2.56 | 0.79 | 4.32 |
| YFB_stipe_center | Young fruiting body stipe center | 9.06 | 4.07 | 14.04 |
| YFB_stipe_shell | Young fruiting body stipe shell | 7.95 | 3.48 | 12.41 |
| YFB_stipe_skin | Young fruiting body stipe skin | 3.33 | 1.13 | 5.52 |
| YFB_cap_skin | Young fruiting body cap skin | 0.94 | 0.16 | 1.73 |
| YFB_cap_tissue | Young fruiting body cap tissue | 1.75 | 0.45 | 3.04 |
| YFB_gill_tissue | Young fruiting body gill tissue | 1.96 | 0.58 | 3.35 |
| YFB_veil | Young fruiting body veil | 2.01 | 0.61 | 3.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.258519 | no |
| Casing | YFB_stipe_shell | 0.130110 | no |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.900073 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.012577 | yes |
| Casing | DIF_stipe_shell | 0.006032 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.001625 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.006387 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.687252 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.064705 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.556701 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.714706 | no |
| DIF_gill_tissue | YFB_veil | 0.739283 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.842515 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.011659 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_veil | 0.000613 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.029648 | yes |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.001140 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_veil | 0.001140 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.015242 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.212940 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.334631 | no |
| YFB_stipe_skin | YFB_veil | 0.335873 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.330305 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.217648 | no |
| YFB_cap_skin | YFB_veil | 0.185340 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.902139 | no |
| YFB_cap_tissue | YFB_veil | 0.872612 | no |
| YFB_gill_tissue | YFB_veil | 0.978263 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.393505 | no |
| Initials | YFB_stipe_shell | 0.211699 | no |
| Initials | YFB_stipe_skin | 0.001140 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.027451 | yes |
| Initials | DIF_stipe_shell | 0.013782 | yes |
| Initials | DIF_stipe_skin | 0.001140 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.540915 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.028675 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.066207 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.902907 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.009773 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.142227 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.228145 | no |
| Pileal_Stipeal_center | YFB_veil | 0.231439 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.347481 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.299355 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.519530 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.961567 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.011659 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.201511 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.865196 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.002084 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.478395 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.120821 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.752525 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.888070 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.911104 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.014956 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.046745 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.289380 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.153551 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.840811 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.046745 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.360534 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.602440 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.180324 | no |
| DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.009773 | yes |
| DIF_stipe_center | YFB_gill_tissue | 0.011041 | yes |
| DIF_stipe_center | YFB_veil | 0.010412 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.841308 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.359090 | no |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.012880 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.108546 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.193131 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.384577 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.356206 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.001140 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.017226 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.029408 | yes |
| DIF_stipe_shell | YFB_veil | 0.023676 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.583799 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.001140 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.029648 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.477859 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.030134 | yes |
| DIF_stipe_skin | YFB_stipe_shell | 0.079829 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.850448 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.009123 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.113345 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.181805 | no |
| DIF_stipe_skin | YFB_veil | 0.183562 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.008457 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.162765 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.081406 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.022631 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.952184 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.399849 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.265754 | no |
| DIF_cap_skin | YFB_veil | 0.222470 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.320737 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.664028 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.001140 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.298244 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.274355 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.944105 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.967333 | no |
| DIF_cap_tissue | YFB_veil | 0.942888 | no |
| Orthofinder run ID | 1 |
| Orthogroup | 13550 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Agaricus bisporus var bisporus H39 | AgabiH39|538900 |
| Agaricus bisporus var bisporus H97 | AgabiH97|034530 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|034530 MFQWLVISLSFALLFGRQEGAEPPFAFCTFQALLVHAAPVVGGMGLICYFIEFHLIISNAVCGEALPPNRWRTFC LVTSPWIVFLAIIIIDIWLVFHEGYIDDIERAPTGYYCHAKSDILVILSAAIPAVVLMVGISCQVLTGILMYRHW DAFKHLKHDARRIHVMIYLRMVSSALVIAIGIILSALAFNRPWSDDTSLIYPFMLIAIAVAFGASRDIFRAWLFW RTPKPCASIIFNHGTVVSSRISFPSQQDVIVIIGPDVEDASLASTATKSPSTKSDFRSSWYYCVNFESGGPIVFA STDINYISF* |
| Coding | >AgabiH97|034530 ATGTTCCAGTGGCTTGTCATCTCTCTCAGTTTCGCGTTACTCTTCGGTCGACAAGAAGGCGCAGAGCCACCATTC GCATTTTGCACCTTTCAAGCGCTGTTGGTACACGCAGCGCCTGTTGTGGGCGGAATGGGCCTTATTTGCTACTTT ATAGAGTTCCACTTGATCATATCTAATGCTGTATGTGGCGAGGCCCTGCCTCCAAATCGTTGGAGGACGTTTTGT CTGGTTACTTCGCCATGGATTGTCTTTCTGGCGATCATCATCATAGACATATGGCTCGTGTTTCATGAGGGATAT ATCGATGATATCGAAAGGGCGCCAACTGGATATTATTGTCATGCGAAAAGCGATATACTGGTCATCCTGTCAGCT GCAATCCCTGCAGTAGTCCTAATGGTCGGAATATCCTGTCAGGTTTTGACTGGAATATTGATGTATCGCCACTGG GATGCATTCAAACATCTCAAGCACGATGCCCGACGAATTCATGTCATGATTTATCTCAGAATGGTGTCAAGCGCT TTAGTTATTGCCATAGGTATAATACTTTCCGCTTTGGCATTCAATAGGCCTTGGTCTGATGATACCAGCTTGATT TACCCTTTCATGCTTATTGCAATTGCCGTTGCCTTCGGTGCTTCAAGGGATATCTTTCGGGCATGGTTATTCTGG CGTACACCGAAGCCGTGTGCTTCGATCATCTTCAACCATGGGACTGTTGTTAGCAGCAGGATCAGTTTTCCTTCC CAGCAAGATGTGATCGTGATTATAGGACCCGATGTAGAAGATGCGTCTCTTGCGAGCACCGCGACCAAGAGCCCT TCAACTAAGTCTGATTTTCGCAGCAGCTGGTACTACTGTGTAAACTTCGAGTCGGGTGGTCCCATAGTATTCGCA TCTACGGATATCAATTATATCAGCTTCTAA |
| Transcript | >AgabiH97|034530 ATGTTCCAGTGGCTTGTCATCTCTCTCAGTTTCGCGTTACTCTTCGGTCGACAAGAAGGCGCAGAGCCACCATTC GCATTTTGCACCTTTCAAGCGCTGTTGGTACACGCAGCGCCTGTTGTGGGCGGAATGGGCCTTATTTGCTACTTT ATAGAGTTCCACTTGATCATATCTAATGCTGTATGTGGCGAGGCCCTGCCTCCAAATCGTTGGAGGACGTTTTGT CTGGTTACTTCGCCATGGATTGTCTTTCTGGCGATCATCATCATAGACATATGGCTCGTGTTTCATGAGGGATAT ATCGATGATATCGAAAGGGCGCCAACTGGATATTATTGTCATGCGAAAAGCGATATACTGGTCATCCTGTCAGCT GCAATCCCTGCAGTAGTCCTAATGGTCGGAATATCCTGTCAGGTTTTGACTGGAATATTGATGTATCGCCACTGG GATGCATTCAAACATCTCAAGCACGATGCCCGACGAATTCATGTCATGATTTATCTCAGAATGGTGTCAAGCGCT TTAGTTATTGCCATAGGTATAATACTTTCCGCTTTGGCATTCAATAGGCCTTGGTCTGATGATACCAGCTTGATT TACCCTTTCATGCTTATTGCAATTGCCGTTGCCTTCGGTGCTTCAAGGGATATCTTTCGGGCATGGTTATTCTGG CGTACACCGAAGCCGTGTGCTTCGATCATCTTCAACCATGGGACTGTTGTTAGCAGCAGGATCAGTTTTCCTTCC CAGCAAGATGTGATCGTGATTATAGGACCCGATGTAGAAGATGCGTCTCTTGCGAGCACCGCGACCAAGAGCCCT TCAACTAAGTCTGATTTTCGCAGCAGCTGGTACTACTGTGTAAACTTCGAGTCGGGTGGTCCCATAGTATTCGCA TCTACGGATATCAATTATATCAGCTTCTAA |
| Gene | >AgabiH97|034530 ATGTTCCAGTGGCTTGTCATCTCTCTCAGTTTCGCGTTACTCTTCGGTCGACAAGAAGGCGCAGAGCCACCATTC GCATTTTGCACCTTTCAAGCGCTGTTGGTACACGCAGCGCCTGTTGTGTGAGTTTTCTAATAAACCTTGTTTTAA TCAGGAGGACGACTCAAAACTTGTTTCTTTAGGGGCGGAATGGGCCTTATTTGCTACTTTATAGAGGTGTGTATA GTCGGCGAGATGGTATAAATAGCTCATTCTGGAGATGCTTTTCAGTTCCACTTGATCATATCTAATGCTGTATGT GGCGAGGCCCTGCCTCCAAATCGTTGGAGGACGTTTTGTGTAAGTTTTACCGCTTACTCTAATTATTTTTTTCCC TAATCTAAGGAGTAGCTGGTTACTTCGCCATGGATTGTCTTTCTGGCGATCATCATCATAGACATATGGGTACGT TGTTTTTTAGTTCTTCGGTATACAAACGGACCTCAAATGGAATAGCTCGTGTTTCATGAGGGATATATCGATGAT ATCGAAAGGGCGCCAACTGGATATTATTGTCATGCGAAAAGCGATATACTGTAAGGATTTTTAGAAACACAGACT GACATGCTCAATTTATGGAATACCAGGGTCATCCTGTCAGCTGCAATCCCTGCAGTAGTCCTAATGGTCGGAATA TCCTGTCAGGGTATGTTGTTCAGATCTGACATCGACATTTGATCACCACATCTATCAATATCTAGTTTTGACTGG AATATTGATGTATCGCCACTGGGATGCATTCAAACATCTCAAGCACGATGCCCGACGAATTCATGTCATGATTTA TCTCAGAATGGTGTCAAGCGCTTTAGTTATTGCCATAGGTATAATGTGCGGCTCCATGTTCCGCTTTAACTCCTG AAATTCTGTTAACCACATATTTAGACTTTCCGCTTTGGCATTCAATAGGCCTTGGTCTGATGATACCAGCTTGAT TTACCCTTTCAGTAAGTGGTGTACTTCCTCCTTGAACATGATTGATGGCTCGCGCCGCAGTGCTTATTGCAATTG CCGTTGCCTTCGGTGCTTCAAGGGTGGGTTTTTTGCTTGTGCTTAGAACGTAAACGGACTGATGAACTAATTTCG ACCAAGGATATCTTTCGGGCATGGTTATTCTGGCGTACACCGAAGCCGTGTGCTTCGATCATCTTCAACCATGGG ACTGTTGTTAGCAGCAGGATCAGTTTTCCTTCCCAGCAAGATGTGATCGTGATTATAGGACCCGATGTAGAAGAT GCGTCTCTTGCGAGCACCGCGACCAAGAGCCCTTCAACTAAGTCTGAGTGCGCTATATATATGCCTCCGGTTGTA TCACAGTAGTATATCGTTGCCCCATAGTTTTCGCAGCAGCTGGTACTACTGTGTAAACTTCGAGTCGGGTGGTCC CATAGTATTCGCATCTACGGATATCAATTATATCAGCTTCTAA |